genome.fa.s190.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  70  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9975082--9975128	24	2.0	22	88	8	67	36	0	0	63	0.94
9975174--9975431	138	1.9	136	86	3	374	47	6	4	41	1.50
9975386--9975430	22	2.0	22	83	8	56	60	4	6	28	1.42
9980470--9980511	8	5.2	8	80	11	50	83	2	11	2	0.84
9982476--9982510	14	2.4	15	85	4	54	42	5	2	48	1.41
9985028--9985061	15	2.3	15	89	0	50	29	0	0	70	0.87
9985186--9985394	105	2.0	106	96	0	384	53	6	8	32	1.56
10001500--10001539	9	4.3	9	81	6	53	42	2	2	52	1.28
10004589--10004902	158	2.0	156	93	1	538	37	20	10	30	1.87
10006131--10006164	1	34.0	1	87	0	50	94	5	0	0	0.32
10011935--10011974	12	3.4	12	83	16	57	45	0	0	55	0.99
10012039--10012080	16	2.6	16	81	11	50	52	0	0	47	1.00
10012138--10012172	15	2.3	15	90	0	52	28	0	0	71	0.86
10013395--10013474	38	2.1	37	88	6	117	60	7	21	11	1.55
10029843--10029875	16	2.0	17	88	5	50	45	3	0	51	1.16
10035451--10035513	24	2.6	24	76	0	63	61	0	3	34	1.12
10035416--10035526	40	2.7	41	74	10	104	59	0	2	37	1.12
10035892--10035967	30	2.6	30	87	2	109	63	0	1	35	1.03
10036011--10036059	23	2.1	23	88	7	73	16	0	10	73	1.09
10036011--10036059	26	2.0	24	88	11	73	16	0	10	73	1.09
10036473--10036525	21	2.4	23	84	9	67	54	3	0	41	1.18
10036828--10036856	13	2.1	14	93	6	51	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10037640--10037722	34	2.4	34	82	4	105	46	9	2	40	1.49
10037956--10037988	15	2.1	17	88	11	52	51	9	0	39	1.34
10038135--10038185	9	5.7	9	81	6	50	56	0	0	43	0.99
10038907--10038995	41	2.2	40	80	9	103	53	0	0	46	1.00
10045442--10045466	13	1.9	13	100	0	50	36	0	0	64	0.94
10045676--10045715	16	2.4	17	87	8	55	42	0	10	47	1.37
10046014--10046051	19	2.0	19	100	0	76	47	26	5	21	1.71
10067163--10067208	14	3.3	13	80	14	56	78	4	0	17	0.91
10068069--10068196	3	44.7	3	68	12	63	60	7	2	28	1.37
10068061--10068200	27	5.5	25	73	13	90	62	7	2	27	1.33
10068070--10068155	35	2.5	35	81	9	97	60	8	1	30	1.33
10068061--10068196	21	6.7	21	70	16	72	62	7	2	27	1.34
10068616--10068773	55	2.9	54	71	5	140	44	18	16	20	1.87
10069601--10069691	48	1.9	46	84	4	119	21	19	9	48	1.78
10069634--10069751	58	2.1	57	80	7	132	15	15	11	58	1.63
10071951--10072000	21	2.5	21	93	6	86	52	0	0	48	1.00
10071988--10072032	16	2.7	16	82	6	54	62	0	0	37	0.96
10071968--10072060	30	3.2	30	76	10	79	61	0	0	38	0.96
10079932--10079974	22	2.0	22	85	0	59	48	2	0	48	1.14
10080358--10080406	26	2.0	25	84	8	64	59	2	0	38	1.09
10082203--10082331	64	2.0	64	95	0	231	43	10	5	41	1.61
10093114--10093155	18	2.2	20	87	12	61	50	0	2	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10093243--10093293	16	3.5	15	81	13	70	47	0	0	52	1.00
10093237--10093293	28	2.0	28	90	6	89	45	0	0	54	0.99
10093237--10093290	13	3.9	14	77	17	60	46	0	0	53	1.00
10093425--10093486	23	2.7	22	85	11	81	50	0	3	46	1.17
10094419--10094463	18	2.4	18	85	3	54	4	6	15	73	1.21
10098476--10098500	2	12.5	2	100	0	50	52	0	0	48	1.00
10104515--10104560	16	3.0	16	75	12	51	36	0	4	58	1.18
10104698--10104745	19	2.5	20	76	10	55	58	0	2	39	1.10
10105570--10105628	29	2.1	28	84	9	75	40	0	5	54	1.23
10105650--10105686	10	3.7	10	92	0	56	51	2	2	43	1.30
10105920--10105949	2	15.5	2	93	6	53	53	0	0	46	1.00
10115762--10115832	21	3.3	20	71	22	56	45	0	4	50	1.21
10115762--10115838	23	3.4	22	81	15	77	46	0	3	49	1.20
10118623--10118684	24	2.7	24	95	5	110	46	0	0	53	1.00
10118618--10118704	24	3.5	24	84	9	79	45	2	0	51	1.13
10118699--10118742	19	2.4	19	80	3	54	27	4	4	63	1.33
10120657--10120686	3	10.0	3	100	0	60	66	0	0	33	0.92
10120687--10120728	3	14.0	3	100	0	84	33	0	0	66	0.92
10124084--10124118	18	1.9	18	100	0	70	45	0	25	28	1.54
10124784--10124844	32	1.9	32	93	0	104	37	9	19	32	1.85
10124826--10125014	104	1.8	104	98	0	369	34	20	22	21	1.96
10125965--10127000	361	2.9	359	90	2	1630	38	18	16	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10135691--10135735	21	2.2	20	84	15	56	53	4	0	42	1.21
10135867--10135914	25	1.9	25	82	0	60	47	12	4	35	1.60
10137635--10137685	15	3.4	14	83	8	57	80	3	1	13	0.94
10138578--10138606	12	2.3	13	94	5	51	6	0	10	82	0.83
10138786--10138854	20	3.7	20	73	15	65	37	4	8	49	1.54
10138812--10138893	16	4.8	16	68	24	51	32	3	8	54	1.48
10138786--10138893	36	3.1	36	84	6	141	34	4	8	52	1.52
10138792--10138895	33	3.1	33	87	4	136	35	3	7	52	1.48
10138873--10138924	16	3.1	16	83	8	59	26	7	9	55	1.59
10138976--10139053	34	2.4	34	87	8	108	33	5	11	50	1.61
10138978--10139069	32	2.8	32	79	9	96	32	6	11	48	1.66
10140328--10140410	30	2.9	29	85	8	89	66	4	1	27	1.19
10140328--10140432	48	2.2	51	76	15	114	63	4	0	30	1.21
10140284--10140392	9	11.8	9	70	13	69	63	4	0	31	1.21
10140284--10140418	28	4.8	28	74	17	84	62	5	1	30	1.25
10140485--10140536	26	2.0	26	84	0	68	57	9	7	25	1.57
10140661--10140710	26	1.9	26	84	8	66	24	2	12	62	1.40
10140772--10140808	15	2.6	14	91	8	65	13	0	5	81	0.86
10140894--10140952	26	2.3	26	82	5	75	33	0	6	59	1.24
10141050--10141082	17	1.9	17	88	11	50	39	0	3	57	1.14
10143040--10143072	2	16.5	2	100	0	66	0	48	0	51	1.00
10144513--10144616	52	2.0	52	88	0	154	44	8	20	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10145404--10145504	52	1.9	52	84	4	132	48	8	17	24	1.76
10145790--10145818	14	2.1	14	100	0	58	13	0	20	65	1.26
10146114--10146210	48	2.0	48	95	0	176	32	2	22	42	1.65
10154015--10154045	8	3.9	8	95	0	53	16	0	0	83	0.64
10154034--10154067	17	2.1	16	88	5	50	32	2	0	64	1.08
10160890--10160960	37	1.9	37	91	0	115	16	19	15	47	1.82
10164179--10164213	12	2.9	12	95	0	61	20	0	17	62	1.32
10165029--10165069	20	2.0	20	90	0	64	24	14	29	31	1.95
10172415--10172463	15	3.2	15	74	5	53	75	6	0	18	1.00
10172710--10172755	20	2.3	20	88	3	67	50	2	8	39	1.46
10173288--10173349	16	3.6	16	74	21	54	66	0	14	19	1.26
10173263--10173344	16	5.1	15	71	25	53	68	0	13	18	1.21
10173288--10173371	6	14.5	6	71	19	54	67	1	11	19	1.28
10173316--10173371	23	2.5	22	88	5	76	69	1	10	17	1.26
10173350--10173390	18	2.2	19	86	4	57	70	2	2	24	1.11
10173369--10173423	22	2.6	22	78	21	64	65	1	0	32	1.03
10173372--10173424	10	4.7	12	73	20	51	64	1	0	33	1.05
10174852--10174924	29	2.6	29	72	12	71	47	1	2	47	1.24
10174951--10174977	3	9.0	3	100	0	54	33	0	0	66	0.92
10175462--10175518	2	28.5	2	85	0	78	3	47	3	45	1.37
10177848--10177898	25	2.0	25	88	7	77	50	7	19	21	1.72
10178041--10178084	22	2.0	22	100	0	88	40	9	13	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10181555--10181598	22	2.1	22	87	8	65	25	15	15	43	1.87
10182071--10182114	22	2.0	22	95	0	79	43	13	11	31	1.80
10183500--10184343	406	2.1	407	98	0	1638	32	14	18	33	1.91
10186411--10186444	18	1.9	18	94	5	61	38	23	14	23	1.92
10188543--10188568	2	13.0	2	100	0	52	50	0	0	50	1.00
10188703--10188770	21	3.2	20	75	19	66	47	2	4	45	1.38
10190207--10190243	17	2.2	17	90	0	56	59	2	0	37	1.12
10190174--10190235	29	2.1	31	81	6	74	46	4	0	48	1.23
10190227--10190313	18	4.9	17	71	19	54	64	2	3	29	1.22
10190253--10190308	26	2.1	27	83	9	71	66	3	3	26	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93