genome.fa.s190.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  79  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11896316--11896361	5	9.4	5	90	6	51	69	0	0	30	0.89
11896313--11896358	13	3.3	14	81	9	58	69	0	0	30	0.89
11898167--11898244	35	2.2	35	82	8	88	41	1	2	55	1.22
11899612--11899646	16	2.2	16	100	0	70	51	0	0	48	1.00
11906091--11906247	52	3.0	52	84	5	210	26	21	8	43	1.80
11906259--11906350	47	2.0	47	93	0	157	46	23	4	25	1.70
11906272--11906350	11	6.9	11	79	13	79	48	25	2	24	1.64
11907194--11907338	52	2.8	51	82	6	157	27	21	8	42	1.81
11909699--11909727	2	14.5	2	100	0	58	0	48	0	51	1.00
11920911--11920949	2	19.5	2	94	0	69	48	0	0	51	1.00
11923461--11923543	38	2.2	38	83	10	107	49	16	9	24	1.76
11924331--11924420	46	1.9	47	93	2	155	43	16	16	23	1.87
11932139--11932351	108	2.0	106	91	5	349	44	18	14	23	1.86
11933430--11933459	15	2.0	15	93	0	51	40	16	30	13	1.87
11935859--11935904	6	7.7	6	83	11	51	32	0	0	67	0.91
11935850--11935899	16	3.2	16	83	11	77	32	0	0	68	0.90
11935853--11935924	7	10.3	7	70	15	51	36	0	0	63	0.94
11935864--11935931	22	3.1	22	87	4	84	42	0	0	57	0.98
11935866--11935941	21	3.5	22	87	1	93	42	0	0	57	0.98
11937677--11937709	16	2.1	16	100	0	66	24	0	12	63	1.28
11939337--11939380	21	2.1	21	83	8	54	40	2	0	56	1.11
11939463--11939507	16	2.8	15	75	18	54	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11943306--11943362	27	2.1	27	86	0	78	59	1	0	38	1.08
11947650--11947736	39	2.2	39	85	0	111	14	18	34	32	1.92
11958026--11958072	7	6.4	7	81	13	51	36	0	0	63	0.94
11960348--11960384	2	18.5	2	100	0	74	48	0	0	51	1.00
11961356--11961398	2	22.5	2	86	9	63	51	0	0	48	1.00
11974565--11974617	2	26.5	2	100	0	106	50	0	49	0	1.00
11986898--11986934	2	18.5	2	100	0	74	48	0	0	51	1.00
11989552--11989581	9	3.4	9	90	9	53	20	0	0	80	0.72
11989548--11989581	17	2.1	17	94	5	61	23	0	0	76	0.79
11989548--11989581	8	4.2	8	89	10	52	23	0	0	76	0.79
11990475--11990516	14	3.1	14	80	16	52	61	4	0	33	1.17
11999252--11999277	2	13.0	2	100	0	52	50	0	0	50	1.00
12000896--12000943	25	1.9	25	83	8	62	18	6	6	68	1.32
12003625--12003649	2	12.5	2	100	0	50	52	0	0	48	1.00
12006980--12007064	29	2.9	30	70	10	77	47	0	2	50	1.14
12007036--12007076	17	2.3	18	88	12	59	46	0	0	53	1.00
12007040--12007083	19	2.3	19	81	18	56	45	0	0	54	0.99
12008599--12008637	12	3.4	11	86	10	51	25	0	0	74	0.82
12008680--12008704	3	8.3	3	100	0	50	32	0	0	68	0.90
12012927--12013011	21	4.2	20	72	18	68	60	1	0	38	1.05
12012927--12013011	18	4.6	18	70	20	59	60	1	0	38	1.05
12013128--12013183	11	5.0	11	82	8	51	66	1	0	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12013620--12013658	14	2.6	16	88	8	55	48	0	2	48	1.15
12013670--12013694	13	1.9	13	100	0	50	56	0	0	44	0.99
12014964--12015041	39	2.0	39	97	0	147	34	0	6	58	1.23
12014991--12015055	30	2.1	33	85	8	91	32	0	9	58	1.30
12015475--12015719	83	2.9	84	80	6	244	38	15	10	35	1.81
12017947--12018054	53	2.0	55	90	3	175	33	21	18	26	1.96
12026424--12026451	2	14.0	2	100	0	56	50	0	0	50	1.00
12028330--12028411	34	2.4	33	77	4	83	36	8	9	45	1.68
12028787--12028881	30	2.9	34	87	7	128	38	6	13	41	1.70
12030596--12030642	20	2.3	20	82	7	60	17	10	12	59	1.60
12031126--12031171	24	1.9	24	82	8	58	47	2	8	41	1.46
12031630--12031796	52	3.2	51	78	12	187	53	8	13	24	1.66
12037982--12038009	12	2.3	12	100	0	56	42	14	17	25	1.87
12043379--12043550	83	2.1	83	87	4	249	23	12	23	40	1.88
12043379--12043586	41	5.1	42	84	6	254	23	12	23	40	1.88
12044086--12044124	20	2.0	20	89	0	60	17	25	10	46	1.80
12044457--12044494	13	3.0	13	80	3	51	18	0	5	76	0.97
12046071--12046110	19	2.2	17	91	8	62	25	5	0	70	1.08
12048047--12048089	9	4.6	9	94	5	68	60	2	0	37	1.10
12048046--12048150	10	10.4	10	78	11	99	59	6	0	33	1.30
12048105--12048172	30	2.2	32	87	10	97	63	5	1	29	1.27
12048105--12048173	31	2.2	32	85	12	90	63	5	1	28	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12048214--12048259	21	2.2	20	84	3	56	67	8	0	23	1.18
12048251--12048314	28	2.3	28	79	12	78	57	4	1	35	1.29
12048838--12048920	29	2.8	29	72	1	76	38	1	6	54	1.33
12048793--12048997	20	10.6	19	69	12	114	38	1	3	56	1.27
12048845--12048997	78	2.0	78	83	5	193	37	1	3	56	1.29
12050015--12050045	2	15.5	2	100	0	62	51	0	0	48	1.00
12051824--12051885	32	1.9	32	96	0	115	32	6	19	41	1.77
12054609--12054667	29	1.9	30	90	10	93	42	15	20	22	1.89
12055705--12055753	23	2.2	22	85	10	64	30	4	16	48	1.64
12062646--12062728	29	2.9	28	71	7	69	61	8	4	25	1.45
12062778--12062837	27	2.3	25	78	13	66	61	1	1	35	1.16
12063160--12063194	18	1.9	18	94	0	61	48	0	8	42	1.33
12066867--12066921	3	18.3	3	88	0	74	36	3	29	30	1.75
12071078--12071403	165	2.0	165	98	0	634	30	14	17	37	1.90
12078069--12078107	15	2.5	15	83	4	51	43	2	0	53	1.14
12079478--12079520	21	2.0	21	100	0	86	41	0	4	53	1.21
12079514--12079563	13	3.7	13	82	10	55	70	2	2	26	1.09
12079529--12079560	15	2.1	15	94	5	55	71	0	0	28	0.86
12079583--12079623	21	2.1	19	86	9	55	65	0	0	34	0.93
12092304--12092340	18	2.1	18	94	0	65	18	16	0	64	1.29
12098280--12098328	21	2.3	20	80	13	53	57	4	6	32	1.42
12106343--12106402	29	2.1	29	84	9	79	40	8	3	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12106443--12106537	29	3.2	29	79	5	102	53	2	4	40	1.32
12108402--12108453	16	3.2	16	74	15	54	40	1	0	57	1.10
12108801--12108840	16	2.4	17	83	8	55	40	0	0	60	0.97
12108893--12108935	22	2.0	22	95	0	77	41	0	11	46	1.40
12112592--12112618	2	13.5	2	100	0	54	48	0	0	51	1.00
12116031--12116066	18	2.0	18	94	0	63	22	16	8	52	1.70
12121632--12121656	13	1.9	13	100	0	50	64	8	20	8	1.46
12123334--12123402	32	2.1	33	94	2	122	63	8	2	24	1.37
12123662--12123702	16	2.5	17	84	15	59	41	0	0	58	0.98
12125751--12125862	38	3.0	38	94	3	194	49	15	3	32	1.61
12133633--12133679	13	3.5	13	80	5	58	70	0	0	29	0.88
12134427--12134472	18	2.4	19	78	7	58	60	0	0	39	0.97
12134286--12134546	137	1.9	137	86	3	373	47	11	7	33	1.68
12134805--12134874	27	2.6	27	79	18	92	55	1	0	42	1.08
12140091--12140225	67	2.0	67	95	2	245	26	14	25	34	1.94
12141241--12141279	21	1.9	20	89	5	60	10	12	0	76	1.01
12144339--12144588	125	2.0	125	87	4	362	42	8	15	33	1.77
12149356--12149457	34	3.0	33	83	9	136	48	3	2	45	1.36
12150005--12150045	21	2.0	21	90	0	64	29	0	0	70	0.87
12151835--12151876	22	1.9	22	85	9	59	40	0	2	57	1.12
12151990--12152056	23	2.9	22	82	6	62	59	2	0	37	1.13
12152324--12152359	2	18.0	2	100	0	72	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12158071--12158130	30	2.1	30	87	6	88	36	0	0	63	0.95
12158069--12158131	29	2.3	27	78	21	69	34	0	0	65	0.93
12158177--12158242	30	2.2	30	83	5	80	51	3	3	42	1.32
12171996--12172067	25	3.0	23	78	8	72	37	2	1	58	1.21
12172010--12172067	24	2.4	25	80	13	77	41	0	0	58	0.98
12172815--12172847	15	2.3	15	89	5	50	18	3	6	72	1.18
12173093--12173125	17	2.0	17	88	5	50	63	9	3	24	1.38
12177048--12177085	3	12.7	3	100	0	76	65	0	0	34	0.93
12181179--12181249	29	2.4	30	81	11	83	56	7	0	36	1.27
12198190--12198235	2	23.0	2	95	0	83	47	0	52	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93