genome.fa.s190.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  45  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5590721--5590760	2	20.0	2	94	0	71	47	0	0	52	1.00
5590945--5591009	18	3.4	19	77	12	62	60	7	1	30	1.34
5590928--5591014	37	2.4	35	76	16	88	64	5	1	28	1.24
5590956--5591017	18	3.4	18	82	8	72	61	3	1	33	1.22
5591183--5591225	20	2.1	20	86	4	59	62	2	2	32	1.20
5591222--5591286	26	2.6	25	73	24	64	69	7	3	20	1.27
5591321--5591349	11	2.6	11	100	0	58	41	6	0	51	1.28
5591480--5591594	9	12.9	9	72	10	67	28	2	2	66	1.19
5591479--5591594	26	4.3	26	75	8	83	29	2	2	65	1.19
5591551--5591622	18	4.2	17	77	13	67	40	0	1	58	1.07
5591551--5591622	35	2.1	34	82	7	83	40	0	1	58	1.07
5593584--5593618	16	2.1	17	89	5	54	2	0	14	82	0.77
5594006--5594099	41	2.3	40	80	10	102	34	9	13	42	1.77
5594006--5594218	40	5.2	40	69	15	114	35	10	14	40	1.80
5594033--5594369	40	8.1	40	69	12	117	38	10	13	37	1.79
5594114--5594348	130	1.8	130	87	1	355	39	10	12	37	1.78
5594343--5594411	29	2.3	31	85	7	88	40	15	8	34	1.79
5594927--5594971	20	2.2	20	88	7	65	51	4	4	40	1.42
5594927--5594973	21	2.4	19	82	7	58	51	4	4	40	1.41
5594937--5595011	19	3.8	19	69	19	55	54	1	4	40	1.27
5595063--5595107	18	2.6	17	86	10	56	68	6	0	24	1.13
5595051--5595111	17	3.4	18	78	15	65	62	4	0	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5595321--5595350	11	2.6	11	94	5	51	83	0	0	16	0.65
5595525--5595562	17	2.2	18	85	4	51	15	0	7	76	1.01
5595525--5595591	18	3.6	18	76	9	64	22	1	7	68	1.23
5595607--5595675	9	7.7	9	78	12	61	24	0	2	72	0.98
5595626--5595703	37	2.1	37	81	9	88	28	1	2	67	1.11
5595633--5595732	29	3.5	28	81	9	87	29	1	4	66	1.17
5595633--5595693	19	3.2	19	77	9	52	27	1	1	68	1.08
5596010--5596048	16	2.5	16	87	4	53	20	2	2	74	1.06
5597211--5597245	18	1.9	18	88	11	54	17	0	11	71	1.14
5597249--5597285	17	2.1	19	85	10	51	0	2	24	72	0.97
5597805--5597936	41	3.2	40	78	9	124	37	10	12	39	1.77
5597867--5598247	41	9.2	40	70	13	182	38	9	12	39	1.77
5597826--5598247	40	10.1	41	72	10	232	38	10	13	38	1.78
5597926--5598106	90	2.0	90	84	2	238	38	9	12	40	1.75
5598020--5598188	81	2.1	80	86	2	230	40	12	11	35	1.80
5598020--5598217	81	2.4	81	84	3	229	40	12	12	35	1.80
5597831--5598225	212	1.9	212	87	3	589	39	10	12	37	1.77
5599594--5599641	20	2.4	19	82	6	60	54	2	0	43	1.12
5599605--5599649	20	2.3	19	81	7	54	57	2	0	40	1.11
5599672--5599728	16	3.1	19	78	14	66	59	7	0	33	1.24
5599690--5599751	17	3.7	16	78	8	61	61	4	0	33	1.17
5599679--5599738	18	3.4	18	79	11	70	60	3	0	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5599679--5599752	35	2.1	36	85	9	100	60	4	0	35	1.15
5599698--5599752	18	3.2	16	82	12	65	61	3	0	34	1.13
5600223--5600279	17	3.4	16	80	7	60	31	1	1	64	1.13
5600261--5600300	19	2.0	20	85	4	55	47	2	0	50	1.14
5600254--5600311	27	2.1	28	83	6	73	46	1	0	51	1.11
5600610--5600679	29	2.3	31	82	4	90	42	2	7	47	1.45
5601296--5601331	16	2.2	16	90	0	54	22	0	2	75	0.94
5602557--5602600	24	1.9	24	81	9	56	6	4	18	70	1.27
5603887--5603918	16	1.9	17	93	6	57	25	0	6	68	1.12
5603936--5603971	15	2.5	15	86	4	56	2	2	22	72	1.11
5604481--5605006	40	13.0	40	73	10	306	37	9	14	38	1.79
5604481--5604981	121	4.1	121	81	6	500	37	9	13	38	1.78
5604481--5605004	81	6.5	80	72	9	316	37	9	14	38	1.79
5608586--5609204	125	5.0	125	82	2	665	45	11	10	32	1.74
5608586--5609187	250	2.4	249	86	1	810	45	11	10	32	1.74
5609340--5609381	20	2.2	20	87	8	61	33	14	4	47	1.65
5610549--5610590	20	2.1	20	82	8	50	14	4	4	76	1.12
5613486--5613515	3	10.0	3	100	0	60	33	0	0	66	0.92
5614330--5614372	11	4.1	10	80	11	50	13	0	4	81	0.84
5614335--5614383	22	2.3	20	79	6	62	10	0	8	81	0.87
5615103--5615199	52	1.9	51	80	4	115	39	10	13	37	1.79
5615099--5615210	51	2.2	51	79	3	118	38	12	12	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5625968--5626144	39	4.5	39	84	1	210	26	13	20	38	1.90
5626334--5626384	3	17.0	3	100	0	102	33	0	0	66	0.92
5627233--5627289	24	2.5	22	76	17	55	15	0	12	71	1.13
5630494--5630536	18	2.3	19	88	4	61	53	6	6	32	1.55
5635793--5635859	13	5.0	14	73	12	52	44	0	1	53	1.09
5646017--5646044	1	28.0	1	100	0	56	100	0	0	0	0.00
5647615--5647734	62	1.9	62	93	3	206	47	4	10	38	1.56
5652242--5652306	31	2.1	31	88	0	94	32	16	7	43	1.77
5652880--5652935	25	2.3	24	84	6	76	42	7	0	50	1.30
5659777--5659811	2	17.5	2	100	0	70	51	0	0	48	1.00
5665677--5665710	16	2.1	17	88	5	52	47	2	2	47	1.32
5670632--5670687	2	28.0	2	85	0	76	50	7	0	42	1.30
5670635--5670687	16	3.3	16	94	0	88	50	7	0	41	1.30
5675279--5675321	5	8.8	5	82	12	54	76	2	2	18	1.00
5675704--5675752	21	2.3	21	86	6	64	69	8	2	20	1.24
5675682--5675749	21	3.3	20	72	9	57	66	14	2	16	1.38
5676154--5676219	3	22.0	3	90	0	105	66	1	1	30	1.10
5676540--5676944	120	3.4	119	78	4	377	44	13	21	20	1.85
5676909--5677394	89	5.5	89	79	1	402	43	13	22	19	1.86
5676962--5677394	178	2.4	177	80	3	476	42	14	23	20	1.88
5688159--5688188	10	3.0	10	100	0	60	10	0	20	70	1.16
5688158--5688204	20	2.3	20	81	0	58	12	0	21	65	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5691093--5691118	7	3.7	7	100	0	52	11	0	0	88	0.52
5694374--5694439	6	10.5	6	79	9	51	46	33	19	0	1.50
5694396--5694439	3	14.7	3	95	0	61	40	34	25	0	1.56
5694390--5694439	24	2.1	24	96	0	91	44	34	22	0	1.53
5694378--5694439	27	2.3	27	94	0	106	46	33	19	0	1.50
5697953--5697993	23	1.9	20	85	14	55	43	9	17	29	1.80
5705285--5705343	30	2.0	30	86	0	82	28	0	13	57	1.37
5709173--5709339	61	2.7	58	78	12	156	43	11	11	33	1.78
5709173--5709339	63	2.7	61	78	11	155	43	11	11	33	1.78
5709767--5709807	19	2.2	19	95	0	73	39	19	0	41	1.52
5710674--5712556	559	3.4	559	85	3	2452	34	16	8	40	1.79
5713520--5714184	343	1.9	348	88	2	1009	32	11	15	40	1.83
5716089--5716148	31	2.0	30	86	3	84	46	16	5	31	1.69
5719225--5719357	65	2.0	68	83	4	173	38	14	12	35	1.83
5719590--5719631	20	2.1	20	90	0	66	26	2	14	57	1.50
5724996--5725025	16	1.9	15	93	6	51	23	3	0	73	0.98
5724995--5725039	19	2.4	19	85	7	56	22	4	0	73	1.01
5724974--5725036	33	1.9	33	87	6	92	20	6	0	73	1.05
5725029--5725071	22	2.0	22	81	9	52	30	0	4	65	1.13
5728074--5728122	12	4.1	12	82	10	64	65	0	2	32	1.04
5733057--5733100	18	2.4	18	77	7	54	29	0	2	68	1.02
5733112--5733162	18	2.9	17	77	8	57	56	0	1	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5736473--5736570	50	2.0	50	89	0	151	25	10	15	48	1.76
5736618--5736656	19	2.1	19	100	0	78	25	10	5	58	1.51
5740326--5740704	186	2.0	186	98	0	740	45	16	8	29	1.78
5742996--5743049	22	2.5	22	84	0	63	33	7	14	44	1.73
5750764--5750809	24	1.9	24	86	8	67	39	30	10	19	1.86
5755467--5755543	40	1.9	40	94	0	136	27	23	11	37	1.89
5779826--5780120	146	2.0	146	86	3	414	42	12	10	34	1.77
5780028--5780212	92	2.0	93	96	2	345	43	8	7	40	1.62
5780853--5780927	33	2.2	33	88	6	107	37	1	8	53	1.39
5784650--5784691	21	2.0	21	100	0	84	38	4	28	28	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93