genome.fa.s190.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  40  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4834775--4834874	31	3.2	31	80	8	114	42	8	23	27	1.81
4834796--4834884	31	2.9	31	82	0	115	43	8	22	24	1.82
4835867--4835904	10	3.7	10	83	16	51	18	13	0	68	1.21
4835945--4835971	10	2.7	10	100	0	54	14	7	0	77	0.97
4835936--4835993	21	2.8	21	78	2	64	8	3	5	82	0.92
4836189--4836330	31	4.5	31	76	3	115	23	19	15	41	1.89
4836249--4836340	31	2.9	31	77	3	94	27	20	14	38	1.91
4836612--4836672	10	6.5	10	70	21	51	3	18	0	78	0.88
4836605--4836672	34	1.9	36	88	5	104	4	20	0	75	0.98
4836642--4836688	22	2.2	21	81	7	51	6	21	2	70	1.20
4838151--4838213	20	3.1	20	80	11	74	1	15	1	80	0.86
4839090--4839141	27	1.9	27	84	0	68	17	9	1	71	1.22
4839795--4839819	9	2.8	9	100	0	50	8	0	0	92	0.40
4840519--4840589	37	1.9	37	91	0	115	39	9	15	35	1.81
4840527--4840620	37	2.5	37	82	1	107	38	8	15	37	1.79
4841822--4841860	21	1.9	20	84	5	51	61	10	10	17	1.55
4842741--4842793	21	2.5	21	84	0	70	22	3	26	47	1.68
4843317--4843358	16	2.5	17	84	7	59	14	4	4	76	1.12
4843756--4843822	24	2.8	24	88	0	98	16	32	19	31	1.94
4845379--4845415	16	2.3	16	100	0	74	32	13	10	43	1.79
4845386--4845423	16	2.4	16	90	0	58	50	10	7	31	1.66
4845319--4845472	74	2.1	76	93	2	267	38	10	12	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4845395--4845632	58	4.1	56	84	8	273	41	7	14	36	1.75
4845395--4845632	118	2.0	116	85	9	315	41	7	14	36	1.75
4845541--4845631	27	3.2	27	67	24	71	40	6	15	37	1.73
4849593--4849677	17	4.2	20	69	21	54	72	2	17	7	1.17
4851444--4851525	41	2.0	42	85	7	114	23	12	19	45	1.84
4851499--4851554	28	2.0	28	96	0	103	21	8	35	33	1.85
4851538--4851870	45	7.5	44	87	3	357	21	13	21	43	1.87
4851538--4851870	89	3.7	87	84	5	409	21	13	21	43	1.87
4852108--4852149	16	2.5	17	84	7	59	14	2	7	76	1.10
4852546--4852613	24	2.8	24	86	0	91	17	35	17	29	1.93
4852705--4852754	24	2.1	24	84	0	64	20	26	12	42	1.86
4854099--4854347	58	4.3	58	85	3	322	41	9	13	35	1.77
4854099--4854347	117	2.1	117	87	1	347	41	9	13	35	1.77
4856494--4856578	29	2.9	29	77	3	98	35	8	9	47	1.66
4856496--4856599	30	3.5	30	77	5	104	35	8	7	48	1.63
4856495--4856599	31	3.5	30	75	10	108	35	8	8	47	1.65
4856617--4856708	29	3.1	29	74	4	76	52	10	8	28	1.66
4861478--4861524	20	2.4	20	86	10	62	80	2	12	4	0.94
4861478--4861524	9	4.9	9	82	12	58	80	2	12	4	0.94
4863718--4863771	22	2.4	21	82	11	63	14	0	7	77	0.97
4866767--4866801	4	8.8	4	93	0	52	48	20	0	31	1.50
4868377--4868409	15	2.1	16	88	5	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4869025--4869057	17	2.0	17	88	5	50	33	0	12	54	1.37
4869443--4869481	20	2.0	20	95	5	71	56	10	5	28	1.54
4877056--4877085	2	15.0	2	100	0	60	50	0	0	50	1.00
4878217--4878303	42	2.1	42	100	0	174	39	21	18	20	1.93
4883691--4883747	12	4.8	11	85	12	69	1	45	15	36	1.57
4883682--4883739	18	3.2	18	95	0	98	1	44	17	36	1.59
4883682--4883739	6	9.7	6	90	0	89	1	44	17	36	1.59
4885866--4885913	23	2.0	24	88	4	71	50	6	14	29	1.67
4894446--4894478	16	1.9	18	88	11	52	54	6	15	24	1.63
4900755--4900819	4	16.2	4	83	0	85	26	21	0	52	1.47
4900755--4900819	20	3.2	20	91	0	112	26	21	0	52	1.47
4907725--4907755	16	1.9	16	93	0	53	51	6	3	38	1.44
4910441--4910488	25	2.0	24	91	4	78	8	0	14	77	0.99
4914786--4914987	99	2.0	99	98	0	386	44	13	8	33	1.75
4914941--4915812	321	2.7	319	77	6	715	42	15	9	32	1.80
4914882--4915831	159	5.9	159	75	7	620	42	15	9	32	1.80
4919412--4919485	37	2.0	37	94	0	130	32	18	5	43	1.73
4923491--4923560	30	2.3	30	83	9	81	37	17	14	31	1.89
4925622--4925741	7	18.4	7	71	16	64	48	34	0	16	1.52
4925582--4925645	33	2.0	32	82	11	78	48	26	1	23	1.60
4925622--4925715	12	7.8	12	71	23	56	48	36	1	13	1.50
4925635--4925741	32	3.3	32	74	12	94	47	34	0	16	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4925622--4925686	13	5.0	13	78	16	55	50	33	1	13	1.51
4925636--4925707	19	3.8	19	76	12	78	50	36	1	12	1.49
4925693--4925743	19	2.6	19	78	3	57	45	31	0	23	1.53
4932046--4932076	11	2.8	11	100	0	62	29	9	25	35	1.88
4944921--4944960	16	2.5	16	95	0	71	52	25	0	22	1.47
4951086--4951115	16	1.9	15	93	6	51	53	0	20	26	1.46
4951091--4951124	16	2.1	16	88	5	50	52	0	20	26	1.46
4952290--4952339	22	2.2	23	83	16	61	62	6	0	32	1.20
4956847--4956885	16	2.5	16	87	4	53	0	2	15	82	0.79
4958703--4958776	37	2.0	37	81	5	87	36	22	13	27	1.92
4958757--4958820	22	2.9	22	88	6	94	40	18	17	23	1.91
4958828--4958907	37	2.2	37	88	0	124	40	18	13	27	1.89
4959546--4959709	73	2.2	72	82	7	188	32	14	17	35	1.89
4960752--4960975	124	1.8	123	81	3	279	25	20	7	47	1.75
4966404--4966444	21	2.0	21	95	0	73	36	12	9	41	1.76
4969381--4969411	16	1.9	16	93	0	53	19	32	0	48	1.49
4971010--4971041	3	10.7	3	100	0	64	65	0	0	34	0.93
4972145--4972198	2	27.0	2	85	7	74	48	1	0	50	1.11
4979495--4979787	18	16.1	18	67	18	126	56	2	1	39	1.22
4979546--4979614	8	8.6	8	70	17	54	52	2	0	44	1.16
4979582--4979684	39	2.6	38	83	8	111	55	0	1	41	1.17
4979487--4979780	15	19.0	15	70	19	144	55	2	1	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4979531--4979787	22	11.7	22	71	16	153	56	2	1	40	1.22
4979545--4979787	23	11.0	23	67	17	97	56	2	1	39	1.21
4979803--4979897	19	5.5	17	76	15	81	46	2	0	51	1.12
4979816--4979923	26	3.5	32	76	20	90	50	0	0	49	1.07
4979816--4979892	36	2.2	33	82	11	93	48	1	0	50	1.09
4979801--4979876	18	4.2	17	69	15	55	42	2	0	55	1.14
4979861--4979935	26	2.9	25	88	5	105	52	0	0	48	1.00
4980033--4980062	14	2.2	14	94	5	53	40	3	0	56	1.16
4985545--4985595	27	1.9	27	88	4	77	5	27	5	60	1.43
4987379--4987407	2	14.5	2	100	0	58	48	0	0	51	1.00
4988283--4988419	3	47.3	3	82	7	158	32	5	1	61	1.27
4992951--4993119	53	3.1	55	83	7	200	56	8	20	14	1.64
4993792--4994022	122	1.9	121	88	4	349	17	22	15	44	1.86
4993944--4994099	65	2.4	67	84	4	210	16	21	16	45	1.85
4993842--4994212	188	2.0	187	80	5	428	17	22	14	45	1.85
4994535--4994633	3	33.3	3	72	17	64	32	6	3	58	1.38
4994558--4994632	31	2.4	31	82	8	91	33	6	4	56	1.44
4999175--4999206	8	3.9	8	92	8	55	9	0	0	90	0.45
4999175--4999207	9	3.8	9	96	4	59	9	0	0	90	0.44
5006510--5006543	16	2.0	16	88	11	50	0	5	14	79	0.91
5017245--5017273	3	9.7	3	100	0	58	68	0	0	31	0.89
5023008--5023081	31	2.3	33	86	4	98	36	1	18	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5023051--5023121	18	3.9	18	74	7	63	32	5	22	39	1.77
5027420--5027584	81	2.0	80	96	1	303	40	13	14	32	1.85
5029351--5029408	30	1.9	30	100	0	116	44	6	15	32	1.73
5030124--5030169	15	3.0	15	84	6	65	50	4	0	45	1.21
5030728--5030770	18	2.3	19	81	14	54	46	2	0	51	1.13
5030878--5030911	14	2.5	13	86	9	50	47	0	2	50	1.16
5031390--5031444	19	2.8	19	94	2	92	50	0	5	43	1.25
5031611--5031669	31	1.9	30	86	3	82	33	5	6	54	1.49
5033269--5033295	3	9.0	3	100	0	54	66	0	33	0	0.92
5040077--5040158	40	2.0	42	88	7	123	41	4	4	48	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93