genome.fa.s190.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  46  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5784946--5785003	28	2.1	28	84	12	75	43	0	3	53	1.17
5786140--5786290	78	1.9	77	84	4	196	43	11	3	41	1.58
5790930--5791000	28	2.5	28	78	17	76	64	2	1	30	1.16
5795249--5795290	16	2.6	16	79	20	52	45	4	0	50	1.23
5795259--5795297	13	2.7	15	81	18	55	41	2	0	56	1.13
5795521--5795579	18	3.4	17	72	23	50	54	0	1	44	1.10
5795532--5795581	18	2.8	17	79	8	55	54	0	2	44	1.11
5796994--5797052	29	2.0	29	96	0	109	25	6	28	38	1.81
5801322--5801956	326	1.9	326	89	1	979	29	16	17	37	1.91
5803136--5803520	59	6.7	58	76	13	262	35	11	6	46	1.67
5803450--5803521	27	2.7	25	74	17	72	33	8	2	55	1.44
5803614--5803659	4	11.2	4	82	17	51	69	2	2	26	1.11
5806190--5806710	72	7.3	70	74	11	285	43	5	12	37	1.67
5806739--5806813	37	2.0	37	87	10	109	45	8	0	46	1.32
5807402--5807509	24	4.7	24	75	13	93	51	8	2	37	1.46
5807414--5807488	20	3.5	20	75	19	64	53	8	4	34	1.49
5807402--5807488	44	2.0	44	81	4	104	51	9	3	35	1.51
5807414--5807498	20	4.0	21	71	14	50	51	8	3	36	1.49
5808767--5808805	18	2.1	19	95	4	71	41	5	0	53	1.23
5808819--5808951	72	1.9	72	83	1	178	42	4	9	42	1.58
5809044--5809187	72	2.0	71	82	5	173	45	6	7	39	1.60
5809880--5809984	24	4.4	23	81	9	97	55	6	4	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5809900--5809967	24	2.8	24	88	0	100	55	8	1	33	1.40
5813056--5813085	10	3.1	10	95	4	53	63	0	0	36	0.95
5815278--5815341	24	2.7	25	80	11	80	29	0	0	70	0.88
5817872--5817918	22	2.1	23	88	4	69	51	8	0	40	1.33
5817866--5817919	22	2.3	23	78	12	56	55	7	0	37	1.28
5818948--5818977	15	2.0	15	93	0	51	70	0	6	23	1.11
5828329--5828386	27	2.2	27	81	9	66	8	20	12	58	1.59
5829577--5829633	28	2.0	29	89	3	89	33	0	5	61	1.18
5829567--5829670	33	3.3	33	77	9	83	25	2	8	62	1.38
5830238--5830285	22	2.2	22	100	0	96	39	14	12	33	1.84
5831810--5831867	24	2.4	23	81	13	64	20	1	6	70	1.19
5835309--5835364	12	4.7	12	76	6	51	57	0	0	42	0.99
5835299--5835364	19	3.6	18	74	12	62	57	0	0	42	0.98
5835352--5835407	24	2.3	25	90	3	87	44	3	3	48	1.37
5835769--5835803	14	2.3	15	85	14	54	51	5	0	42	1.25
5846379--5846423	23	2.0	23	86	4	65	51	0	0	48	1.00
5853689--5853726	2	19.5	2	83	5	51	52	0	2	44	1.14
5856138--5856181	3	14.7	3	100	0	88	31	0	0	68	0.90
5858313--5858388	13	6.0	13	71	15	61	43	1	0	55	1.08
5858311--5858382	37	1.9	38	83	13	96	43	1	0	55	1.08
5858372--5858408	17	2.1	19	90	10	60	56	0	0	43	0.99
5858375--5858417	22	2.0	22	85	0	59	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5859585--5859637	21	2.6	19	77	13	54	43	0	5	50	1.25
5864393--5864442	21	2.4	20	81	15	57	24	6	18	52	1.67
5868901--5868948	19	2.5	19	93	6	80	45	12	0	41	1.42
5874717--5874784	12	5.6	12	73	16	59	41	32	7	19	1.79
5874705--5874782	25	3.2	24	83	5	93	39	33	7	19	1.80
5875440--5876354	186	4.9	185	81	4	949	39	11	15	33	1.83
5875442--5876356	376	2.4	370	82	4	1084	39	11	15	33	1.83
5876309--5876398	45	2.0	43	91	4	144	46	5	11	36	1.63
5875940--5876764	415	2.0	417	83	5	1058	42	11	13	32	1.81
5876358--5876772	185	2.2	185	83	2	521	41	11	13	32	1.81
5886493--5886533	21	2.0	21	85	9	57	34	0	0	65	0.93
5886625--5886655	9	3.4	9	100	0	62	32	0	0	67	0.91
5886701--5886769	21	3.1	21	74	14	59	31	2	0	65	1.08
5887678--5887725	20	2.5	19	86	3	60	66	6	2	25	1.26
5887888--5887971	45	1.9	46	80	9	104	46	2	1	50	1.22
5888453--5888491	16	2.4	16	87	8	53	48	0	2	48	1.15
5888454--5888563	20	5.7	20	67	18	54	46	0	3	49	1.25
5888325--5888707	210	1.8	208	86	8	564	45	2	4	46	1.37
5888663--5888701	17	2.4	16	91	8	62	51	0	2	46	1.14
5888770--5888834	33	2.0	33	81	6	78	43	0	3	53	1.16
5888856--5888917	25	2.5	25	87	7	90	50	3	1	45	1.27
5889214--5889261	6	7.8	6	83	4	51	33	4	8	54	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5890182--5890240	27	2.3	26	85	11	77	55	0	11	32	1.36
5891482--5891651	89	1.9	89	80	4	200	17	2	32	47	1.61
5891528--5891863	29	11.4	29	69	16	117	19	0	30	48	1.55
5891547--5891865	58	5.4	57	75	10	189	19	0	31	48	1.53
5891625--5891863	87	2.7	86	77	8	239	19	0	31	48	1.53
5891856--5891894	15	2.7	15	81	18	55	20	5	35	38	1.75
5891752--5891969	14	15.2	14	67	12	77	20	1	28	49	1.57
5891852--5891969	28	4.1	28	76	15	107	20	1	27	50	1.57
5892096--5892138	12	3.6	11	84	12	50	25	2	0	72	0.97
5893500--5893537	17	2.1	19	90	9	62	42	0	0	57	0.98
5893621--5893700	28	2.9	28	83	7	101	31	17	26	25	1.97
5894042--5894290	37	6.7	37	73	5	108	48	16	19	15	1.81
5894100--5894378	150	1.9	150	81	3	339	47	15	20	16	1.83
5894376--5894440	22	3.0	22	80	6	78	32	18	21	27	1.97
5894507--5894559	22	2.4	22	81	12	72	35	15	18	30	1.92
5894321--5894747	132	3.2	131	80	3	417	39	15	20	24	1.92
5894639--5894704	22	3.0	22	82	10	73	33	18	21	27	1.96
5894677--5894923	109	2.3	108	77	9	266	39	16	19	25	1.91
5895986--5896180	33	5.9	33	77	6	164	33	14	20	30	1.93
5895985--5896190	66	3.1	66	80	6	222	34	15	19	30	1.93
5896238--5896322	28	3.0	28	82	3	91	34	15	27	23	1.95
5896500--5896565	23	3.0	22	69	10	62	21	18	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5897338--5897559	115	1.9	115	93	3	385	37	13	13	35	1.84
5900541--5900628	4	22.0	4	73	4	61	44	6	25	23	1.78
5900555--5900628	20	3.7	20	75	7	69	43	6	27	22	1.78
5902851--5903148	29	10.2	29	73	10	153	17	1	34	46	1.58
5902916--5903027	30	3.8	30	82	3	120	16	0	33	49	1.53
5902939--5903093	59	2.6	59	80	8	149	19	0	34	45	1.55
5903157--5903197	15	2.9	14	82	7	55	17	0	31	51	1.46
5903161--5903197	14	2.6	14	86	4	56	18	0	35	45	1.50
5903386--5903470	3	28.3	3	97	0	161	32	1	0	65	1.00
5904978--5905040	28	2.2	28	83	5	74	34	17	23	23	1.96
5907201--5907246	22	2.1	22	87	0	65	58	2	2	36	1.22
5907727--5907831	42	2.5	42	81	12	124	49	0	3	46	1.19
5907959--5908039	37	2.2	37	84	8	103	49	2	1	46	1.23
5908196--5908255	26	2.4	25	84	13	86	46	5	1	46	1.34
5908319--5908370	26	2.0	27	84	3	70	48	11	0	40	1.40
5909542--5909605	27	2.4	26	77	10	67	56	0	9	34	1.32
5922652--5922716	26	2.5	25	81	13	87	46	1	4	47	1.32
5923656--5923717	22	2.9	22	79	11	67	40	3	1	54	1.26
5924793--5924872	28	2.9	29	80	9	96	26	27	17	28	1.98
5924968--5925009	6	6.6	7	86	13	56	61	0	0	38	0.96
5924969--5925008	18	2.2	19	95	4	73	60	0	0	40	0.97
5926379--5926433	3	18.3	3	100	0	110	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5926559--5926662	14	7.3	15	69	16	60	52	25	2	18	1.59
5926638--5926764	57	2.2	58	81	5	152	47	29	1	22	1.60
5926671--5926938	29	9.2	28	70	12	130	45	32	1	20	1.61
5926706--5926926	29	7.5	30	71	9	143	46	32	1	19	1.61
5926737--5926972	88	2.7	88	78	5	210	45	34	2	18	1.61
5926777--5926926	58	2.5	60	79	4	162	47	32	2	18	1.60
5926937--5926993	22	2.6	22	81	13	57	43	38	5	12	1.65
5930245--5930317	4	18.2	4	73	5	58	23	24	5	46	1.73
5930245--5930298	20	2.7	20	83	11	83	22	25	5	46	1.73
5933105--5933149	20	2.1	22	88	8	67	77	2	13	6	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93