genome.fa.s190.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  54  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6884182--6884449	137	1.9	138	90	2	423	36	13	10	39	1.79
6884086--6884449	92	3.9	91	86	7	441	37	13	10	38	1.80
6884187--6884697	254	2.0	253	78	13	398	38	14	9	37	1.79
6884083--6884697	46	13.4	46	78	11	385	38	14	9	37	1.79
6884632--6884699	21	3.0	23	83	14	95	39	16	7	36	1.76
6884640--6884758	61	2.0	61	98	0	229	38	16	7	36	1.77
6886008--6886064	20	2.8	19	82	15	62	8	14	0	77	0.99
6886010--6886058	12	3.8	13	79	12	57	8	12	0	79	0.93
6886008--6886064	19	2.8	20	78	17	64	8	14	0	77	0.99
6886028--6886070	19	2.2	20	84	12	54	11	13	0	74	1.07
6886038--6886092	28	1.9	28	85	10	76	9	18	0	72	1.10
6886025--6886099	27	2.7	29	78	10	86	8	16	0	76	1.02
6886456--6886510	9	5.9	10	81	10	55	0	12	3	83	0.77
6889024--6889324	148	2.0	150	93	1	516	33	12	19	34	1.90
6890349--6890381	14	2.3	15	94	5	59	30	0	6	63	1.18
6890461--6890511	6	9.3	6	83	12	58	66	0	1	31	1.03
6890460--6890511	22	2.4	22	81	9	63	67	0	1	30	1.02
6893403--6893475	38	1.9	38	83	8	96	72	8	5	13	1.25
6895026--6895055	2	15.0	2	100	0	60	50	0	0	50	1.00
6897790--6898022	119	2.0	119	89	3	362	32	11	7	48	1.67
6897789--6898042	61	4.2	61	83	6	327	31	10	7	50	1.64
6899722--6899808	44	2.0	44	82	4	106	37	19	12	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6899861--6900003	59	2.4	58	80	4	153	31	21	11	35	1.89
6899861--6899993	58	2.3	58	81	3	151	29	22	11	36	1.89
6900022--6900236	67	3.2	65	77	14	206	37	14	8	38	1.78
6900060--6900250	46	4.2	46	83	5	217	37	14	9	37	1.80
6900022--6900250	21	10.1	23	72	14	140	37	14	8	38	1.78
6900021--6900250	92	2.5	92	79	5	238	38	14	8	38	1.77
6901509--6901580	24	3.0	24	85	4	92	1	18	1	79	0.88
6901476--6901565	31	2.8	34	77	17	93	4	20	1	74	1.05
6901509--6901606	12	7.4	13	69	22	53	2	19	1	77	0.93
6901525--6901611	16	5.7	15	78	17	76	1	17	1	80	0.84
6901514--6901616	38	2.6	39	82	13	140	0	19	0	78	0.86
6901514--6901682	61	2.8	62	78	12	172	4	20	0	75	1.01
6901537--6901676	31	4.6	30	76	11	124	4	20	0	74	1.03
6901651--6901694	21	2.2	20	83	4	52	11	22	0	65	1.24
6902035--6902069	17	2.1	17	88	0	52	2	14	0	82	0.77
6904405--6904590	93	2.0	95	90	2	295	46	11	18	23	1.82
6905587--6905808	58	3.8	59	82	3	216	34	10	5	49	1.61
6905585--6905808	117	1.9	117	82	1	279	34	10	5	49	1.60
6906626--6906782	52	3.0	52	84	7	194	26	26	8	39	1.84
6906807--6906848	11	3.8	11	90	0	66	50	30	0	19	1.48
6906807--6906849	22	2.0	22	95	0	77	48	30	0	20	1.50
6907099--6907190	25	3.8	24	77	7	87	19	33	9	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6907086--6907190	49	2.1	50	85	5	142	20	34	9	36	1.85
6907722--6907877	52	3.0	52	86	4	201	26	25	8	39	1.84
6907902--6907943	11	3.8	11	90	0	66	50	30	0	19	1.48
6907902--6907944	22	2.0	22	95	0	77	48	30	0	20	1.50
6910051--6910077	1	27.0	1	100	0	54	0	0	100	0	0.00
6911199--6911231	16	2.1	16	88	11	50	63	0	3	33	1.10
6911752--6911813	21	3.0	20	75	15	72	41	6	1	50	1.38
6912224--6912300	21	3.8	21	77	13	72	35	2	5	57	1.35
6911906--6912416	281	1.8	278	79	8	597	31	9	6	52	1.58
6913305--6913343	19	2.1	19	90	0	60	69	0	0	30	0.89
6913527--6913566	3	13.0	3	84	5	53	60	0	0	40	0.97
6913803--6913846	22	2.0	22	86	0	61	31	2	0	65	1.05
6914418--6914460	20	2.0	22	91	8	72	32	2	2	62	1.20
6914784--6914857	29	2.7	27	80	12	78	48	1	0	50	1.09
6918713--6918752	16	2.5	17	84	15	59	72	0	2	25	0.97
6920473--6920533	18	3.2	20	93	4	76	34	0	1	63	1.04
6920483--6920533	3	17.0	3	100	0	102	33	0	0	66	0.92
6921425--6921462	17	2.3	17	86	4	51	18	7	0	73	1.06
6921467--6921498	3	10.7	3	100	0	64	68	0	0	31	0.90
6924181--6924401	43	5.1	43	82	3	248	26	12	16	44	1.84
6924177--6924433	87	3.0	85	75	8	234	26	13	16	43	1.85
6924738--6924771	17	2.0	17	88	11	52	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6925142--6925318	96	1.9	95	80	5	214	30	12	29	27	1.93
6925700--6925913	60	3.7	56	78	12	177	50	6	9	32	1.61
6927894--6927995	35	2.9	36	81	11	97	25	4	9	59	1.49
6927913--6927995	37	2.3	35	83	8	96	21	6	9	62	1.47
6928037--6928076	18	2.2	19	86	4	55	82	0	2	15	0.77
6929459--6929615	52	3.0	52	81	0	179	27	22	8	42	1.82
6929639--6929681	11	3.9	11	87	0	68	51	30	0	18	1.47
6929636--6929682	22	2.1	22	96	0	85	46	29	0	23	1.52
6929923--6929977	25	2.2	25	83	6	76	23	32	3	40	1.72
6929957--6930048	25	3.7	25	72	1	69	19	34	8	36	1.83
6930581--6930737	52	3.0	52	76	5	174	28	22	7	41	1.81
6930761--6930814	11	4.9	11	88	0	81	51	27	0	20	1.47
6931713--6931870	52	3.0	52	80	7	176	26	23	6	43	1.79
6936899--6936973	39	1.9	39	94	0	132	53	6	4	36	1.46
6939411--6939439	3	9.7	3	100	0	58	31	0	0	68	0.89
6939840--6939900	22	2.7	21	82	12	68	40	3	0	55	1.16
6939904--6939954	22	2.2	24	82	10	61	37	7	0	54	1.29
6943812--6943864	20	2.7	19	80	8	61	24	3	0	71	1.02
6943812--6943872	21	3.0	20	73	15	54	24	3	1	70	1.11
6946343--6946802	58	7.9	58	78	4	358	45	7	11	35	1.68
6946343--6946746	59	6.9	58	80	3	373	45	7	11	35	1.68
6946343--6946806	174	2.7	173	83	5	542	45	7	11	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6947352--6947417	10	6.7	10	72	10	55	56	1	1	40	1.18
6947352--6947509	9	17.3	9	66	10	63	55	3	2	37	1.31
6947520--6947569	17	2.9	17	79	5	57	60	4	4	32	1.34
6947599--6947679	20	4.3	19	69	17	62	56	7	3	32	1.44
6947693--6947726	16	2.1	17	88	5	52	64	2	2	29	1.22
6947906--6947947	20	2.2	20	86	4	59	35	2	2	59	1.23
6947957--6948004	21	2.3	21	85	3	62	20	2	10	66	1.32
6948098--6948162	12	5.1	12	78	14	58	24	3	1	70	1.10
6948181--6948218	20	1.9	20	94	0	67	60	0	5	34	1.19
6948638--6948679	17	2.5	17	84	7	59	76	4	0	19	0.96
6950098--6950180	32	2.7	30	74	17	80	48	0	2	49	1.14
6950724--6950791	21	3.2	21	69	22	70	50	1	5	42	1.35
6950717--6950818	42	2.4	41	85	6	116	50	0	4	44	1.30
6951114--6951171	23	2.6	23	81	10	75	79	3	10	6	1.04
6952446--6952488	10	4.4	10	82	5	52	65	2	2	30	1.18
6952444--6952489	19	2.4	19	85	0	65	60	2	2	34	1.21
6958780--6958851	3	24.3	3	91	2	119	30	0	2	66	1.06
6958955--6959008	24	2.2	23	81	18	65	25	5	3	64	1.32
6959059--6959084	3	8.7	3	100	0	52	30	0	0	69	0.89
6959983--6960024	14	3.1	15	80	19	56	7	42	21	28	1.79
6959983--6960019	13	2.7	14	80	20	51	8	43	24	24	1.81
6960077--6960106	11	2.7	11	100	0	60	13	0	6	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6960136--6960433	152	2.0	152	96	0	551	29	15	17	37	1.90
6964136--6964172	10	3.7	10	88	0	56	83	0	13	2	0.74
6964111--6964180	19	3.7	20	77	9	83	75	0	17	7	1.01
6965425--6966145	41	17.5	41	91	3	1137	22	17	25	34	1.95
6965425--6966145	83	8.7	82	93	2	1137	22	17	25	34	1.95
6965425--6966145	289	2.5	285	92	3	1194	22	17	25	34	1.95
6966152--6966256	1	105.0	1	77	0	84	86	4	0	8	0.69
6966151--6966256	31	3.4	30	87	6	149	85	5	0	8	0.73
6966154--6966256	39	2.6	40	78	9	120	86	4	0	8	0.70
6966426--6966479	24	2.2	23	81	18	65	25	5	3	64	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93