genome.fa.s190.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  56  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7056575--7056667	22	4.3	21	75	4	78	36	7	7	48	1.60
7056501--7056655	44	3.5	44	72	1	132	40	8	5	46	1.56
7056581--7056701	22	5.6	20	72	12	62	32	9	8	50	1.64
7056805--7056887	22	3.8	21	75	3	67	40	10	3	44	1.57
7056875--7056914	19	2.1	19	90	0	62	30	5	7	57	1.48
7056894--7057031	22	6.3	22	68	5	91	32	7	7	51	1.60
7056901--7057012	44	2.5	44	80	0	116	31	8	8	51	1.62
7056990--7057064	36	2.1	36	87	0	105	34	9	5	50	1.57
7057032--7057135	21	4.6	22	76	12	86	36	10	6	46	1.65
7057124--7057199	22	3.2	24	74	14	68	38	10	0	51	1.37
7057505--7057883	22	17.4	22	67	11	100	36	9	3	50	1.52
7057994--7058066	35	2.1	35	89	0	110	47	1	6	43	1.38
7060805--7061084	151	1.9	151	82	6	354	48	3	5	42	1.43
7060805--7061104	150	2.0	151	81	5	349	46	4	5	43	1.47
7061109--7061167	23	2.6	23	97	0	109	45	0	5	49	1.24
7061928--7061956	3	9.7	3	100	0	58	68	0	0	31	0.89
7068600--7068658	24	2.5	24	78	10	68	72	0	0	27	0.84
7068596--7068670	22	3.4	21	76	16	64	72	1	1	25	1.01
7078551--7078602	19	2.7	19	81	0	59	42	19	11	26	1.85
7078651--7078701	26	1.9	26	88	4	75	76	11	0	11	1.02
7079102--7079139	15	2.6	14	88	8	58	89	5	5	0	0.59
7079101--7079139	12	3.5	11	86	13	53	87	5	7	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7079102--7079145	15	3.2	13	84	12	52	86	6	4	2	0.77
7079138--7079239	3	34.7	3	88	3	154	63	0	1	33	1.12
7079331--7079397	26	2.6	25	86	6	98	25	20	26	26	1.99
7079573--7079783	89	2.4	90	81	3	239	45	13	20	19	1.84
7080012--7080202	84	2.2	87	81	6	210	45	16	21	16	1.86
7080082--7080656	208	2.8	208	83	2	649	46	15	19	18	1.84
7080813--7080899	41	2.1	41	89	0	129	32	24	12	31	1.92
7081424--7081532	55	2.0	55	87	5	159	14	21	13	50	1.77
7084083--7084360	120	2.3	119	88	6	404	38	13	6	41	1.69
7084081--7084360	58	4.7	58	83	9	334	38	13	6	41	1.70
7084377--7084533	13	11.7	13	66	25	62	72	2	2	22	1.09
7084377--7084439	5	12.8	5	76	21	62	82	0	1	15	0.74
7084377--7084440	6	10.7	6	76	14	53	82	0	1	15	0.74
7084387--7084440	20	2.7	19	83	11	72	83	0	1	14	0.73
7084455--7084524	12	6.0	12	76	20	60	67	1	1	30	1.08
7084372--7084538	21	7.4	22	71	21	89	73	2	2	21	1.09
7085296--7085360	21	3.1	21	73	18	64	66	3	6	24	1.29
7085343--7085376	16	2.1	16	88	0	50	67	2	5	23	1.26
7085367--7085526	4	40.5	4	70	16	84	71	0	2	25	1.03
7085360--7085526	15	11.5	15	76	17	106	71	0	2	25	1.03
7085356--7085518	7	23.1	7	75	21	87	70	0	2	26	1.04
7085467--7085526	21	2.9	21	76	19	63	83	0	0	16	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7085713--7085921	45	4.8	45	75	11	168	39	19	14	26	1.90
7085717--7085942	87	2.7	87	78	6	223	40	19	14	26	1.90
7085851--7085970	40	2.9	41	85	8	147	40	16	14	29	1.88
7085757--7085972	42	5.2	40	76	10	148	38	18	13	28	1.90
7097417--7097751	59	5.7	58	86	6	451	37	14	7	40	1.74
7097834--7097872	3	12.3	3	84	10	51	64	0	2	33	1.08
7097834--7097895	9	6.3	10	79	17	60	67	0	1	30	1.00
7097834--7097896	6	9.0	7	76	20	53	68	0	1	30	0.99
7097834--7097882	13	3.7	13	82	12	55	65	0	2	32	1.04
7098744--7098877	40	3.5	37	77	15	114	67	1	3	26	1.16
7098829--7098981	8	18.8	8	72	21	72	62	1	3	32	1.22
7098829--7098975	4	37.2	4	66	17	51	62	1	3	32	1.20
7098822--7098975	33	4.6	33	74	17	131	62	1	3	32	1.19
7098812--7098975	15	10.9	15	69	20	76	62	1	3	32	1.20
7104025--7104063	21	1.9	20	89	5	60	48	5	17	28	1.68
7108538--7108588	26	2.0	26	92	0	84	25	23	27	23	2.00
7111244--7111273	14	2.2	13	94	5	51	30	10	0	60	1.30
7111124--7111421	164	1.8	165	86	2	431	35	10	7	46	1.65
7112407--7112452	24	2.0	24	87	8	69	65	6	4	23	1.35
7115276--7115375	34	2.9	34	75	0	92	41	13	10	36	1.77
7116167--7116204	20	1.9	20	88	0	58	44	0	0	55	0.99
7116618--7116667	26	2.0	25	88	4	73	62	8	6	24	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7121386--7121434	20	2.5	20	96	0	89	20	44	12	22	1.84
7125300--7125356	28	2.0	28	86	6	80	22	14	17	45	1.84
7125343--7125488	74	2.0	75	83	6	190	34	10	10	43	1.75
7126786--7126820	2	17.5	2	93	0	61	45	0	0	54	0.99
7128036--7128061	10	2.6	10	100	0	52	57	0	0	42	0.98
7130153--7130230	30	2.6	30	83	0	93	50	6	8	34	1.60
7130576--7130626	25	2.0	25	96	0	93	45	13	11	29	1.79
7130648--7130690	22	1.9	23	90	4	70	55	2	4	37	1.33
7131299--7131344	19	2.4	19	85	7	58	56	0	2	41	1.11
7131298--7131344	18	2.3	20	75	20	53	57	0	2	40	1.11
7136083--7136189	54	2.0	52	89	3	160	48	14	16	19	1.81
7140982--7141323	172	2.0	172	82	0	423	36	9	14	38	1.80
7141839--7141863	13	1.9	13	100	0	50	8	4	0	88	0.64
7151216--7151249	18	1.9	17	88	5	50	52	11	0	35	1.38
7151580--7151638	28	2.1	28	96	0	109	62	5	3	28	1.32
7151588--7151646	28	2.1	28	84	3	75	59	8	3	28	1.43
7153359--7153394	12	2.9	12	87	4	54	22	0	8	69	1.15
7154034--7154168	55	2.5	55	86	3	175	30	4	9	55	1.52
7154181--7154232	24	2.2	24	89	0	77	26	3	9	59	1.46
7154226--7154273	18	2.7	18	76	20	55	29	4	8	58	1.46
7154234--7154276	19	2.3	18	88	8	59	27	4	9	58	1.49
7154416--7154468	17	2.8	20	75	16	58	39	5	7	47	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7155000--7155084	31	2.7	32	70	17	79	38	2	4	54	1.34
7156948--7156973	11	2.4	11	100	0	52	76	7	0	15	0.99
7161527--7161582	22	2.6	21	82	5	58	12	5	5	76	1.12
7161555--7161596	20	2.2	20	84	16	54	11	9	7	71	1.31
7161924--7161959	18	1.9	18	88	5	54	52	0	0	47	1.00
7162465--7162509	17	2.6	17	75	0	54	71	4	4	20	1.21
7174795--7174826	2	16.0	2	100	0	64	50	0	0	50	1.00
7174689--7174967	135	2.0	136	94	4	488	37	12	8	40	1.74
7174936--7174989	2	27.0	2	100	0	108	50	0	0	50	1.00
7175784--7175920	61	2.2	62	81	3	170	37	18	14	29	1.91
7175858--7176090	124	1.9	124	80	8	278	34	13	16	35	1.88
7176003--7176290	63	4.7	59	73	7	213	30	16	12	39	1.86
7176064--7176286	120	1.9	120	83	5	292	30	16	13	39	1.87
7176003--7176263	62	4.3	60	71	12	176	30	14	13	41	1.85
7183850--7183898	18	2.7	18	84	12	57	22	0	2	75	0.90
7183850--7183898	17	2.7	18	84	12	57	22	0	2	75	0.90
7184734--7184759	8	3.2	8	100	0	52	23	0	0	76	0.78
7184896--7185140	42	5.8	42	90	0	348	44	19	12	23	1.85
7184896--7185175	126	2.2	126	85	4	377	43	18	13	24	1.86
7185118--7185381	41	6.5	40	88	3	341	36	23	15	24	1.93
7185118--7185381	81	3.2	82	89	3	365	36	23	15	24	1.93
7185143--7185381	122	1.9	124	92	3	403	36	22	15	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7185974--7186015	22	2.0	21	90	4	66	28	21	14	35	1.92
7193263--7193288	11	2.4	11	100	0	52	26	0	0	73	0.84
7193751--7193799	18	2.7	18	84	12	57	22	0	2	75	0.90
7193751--7193799	17	2.7	18	84	12	57	22	0	2	75	0.90
7195224--7195267	21	2.1	21	91	0	70	43	29	6	20	1.78
7195245--7195640	62	6.3	62	69	13	197	38	14	15	32	1.87
7196762--7196830	34	2.0	34	100	0	138	36	11	2	49	1.54
7200983--7201027	23	2.0	23	86	0	63	51	8	0	40	1.33
7203878--7204021	62	2.3	63	82	4	177	33	14	14	37	1.87
7204377--7204496	62	1.9	62	85	6	163	40	12	15	31	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93