genome.fa.s190.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  58  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7407306--7407348	21	2.0	21	90	0	68	53	9	4	32	1.53
7410096--7410167	19	3.7	20	85	14	105	48	0	0	51	1.00
7410117--7410174	22	2.5	23	73	18	66	53	0	0	46	1.00
7410160--7410222	16	3.6	16	75	25	56	65	3	0	31	1.09
7410155--7410206	24	2.3	22	86	6	68	65	3	0	30	1.10
7410967--7411010	22	2.0	23	86	4	63	36	0	2	61	1.09
7414354--7414489	3	47.7	3	75	20	114	29	2	2	66	1.16
7415252--7415345	5	19.8	5	71	16	58	18	2	3	76	1.02
7415257--7415351	17	5.5	17	73	14	68	17	2	3	76	1.01
7415251--7415360	22	4.9	21	75	20	98	17	1	3	77	1.00
7416839--7416868	14	2.2	13	94	5	51	50	0	0	50	1.00
7423896--7424041	72	2.0	73	90	2	231	35	5	6	52	1.52
7426011--7426049	17	2.3	17	100	0	78	25	10	12	51	1.71
7428705--7429295	59	9.7	57	75	13	502	44	7	13	34	1.71
7428957--7428994	20	1.9	20	94	0	67	42	0	28	28	1.56
7428976--7429297	116	2.8	113	90	6	470	43	7	13	35	1.72
7433708--7433784	23	3.0	27	69	20	65	74	0	18	7	1.06
7433716--7433759	23	1.9	23	90	0	70	77	0	15	6	0.97
7433712--7433768	20	3.0	19	78	16	64	78	0	15	5	0.91
7435216--7435560	41	8.1	41	86	8	458	23	15	23	37	1.93
7435216--7435560	42	8.1	42	86	7	455	23	15	23	37	1.93
7435421--7435520	49	2.0	50	94	1	175	27	15	27	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7435566--7435609	9	4.9	9	83	10	63	86	9	4	0	0.70
7438089--7438721	59	10.7	58	82	7	733	44	6	12	36	1.69
7446690--7446765	8	9.2	8	76	15	57	11	17	1	69	1.25
7446690--7446765	16	4.6	16	75	14	66	11	17	1	69	1.25
7446748--7446796	22	2.2	21	82	10	62	14	16	2	67	1.33
7446753--7446796	22	2.0	22	90	4	70	13	13	2	70	1.26
7449564--7449593	16	1.9	15	93	6	51	50	6	16	26	1.70
7456228--7456279	27	1.9	27	92	0	86	25	26	9	38	1.86
7460558--7460606	16	3.0	15	85	11	53	26	4	2	67	1.19
7461293--7461420	43	3.0	44	79	3	118	45	17	10	26	1.81
7462007--7462240	25	10.0	25	73	17	182	33	14	9	43	1.77
7462015--7462261	46	5.4	46	84	5	320	34	13	8	42	1.76
7462040--7462256	21	9.6	21	72	16	148	34	13	8	43	1.75
7473146--7473175	13	2.3	13	94	0	51	13	3	6	76	1.11
7475387--7475701	169	1.9	169	91	0	513	29	17	23	29	1.97
7476638--7476741	52	2.0	52	84	3	138	25	23	9	41	1.84
7476766--7476807	11	3.8	11	90	0	66	50	30	0	19	1.48
7476753--7476808	22	2.6	22	88	2	78	48	28	1	21	1.60
7477042--7477098	25	2.3	25	84	6	71	19	33	7	40	1.78
7477089--7477160	25	2.9	25	79	2	83	19	30	9	40	1.84
7477728--7477858	52	2.5	52	88	3	183	27	19	8	45	1.79
7477870--7477914	22	2.1	22	87	4	65	46	26	2	24	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7477884--7477915	11	2.9	11	95	0	55	46	28	0	25	1.53
7479366--7479429	32	2.0	32	90	0	101	59	10	4	25	1.50
7480227--7480301	37	2.0	38	84	2	98	53	21	12	13	1.71
7484014--7484052	15	2.6	15	84	11	53	43	0	2	53	1.14
7492825--7492877	27	2.0	27	88	0	79	69	7	3	18	1.28
7494848--7495042	103	1.9	104	82	4	250	32	7	12	47	1.69
7494891--7495111	107	2.1	103	80	6	248	31	6	13	48	1.68
7513253--7513343	47	1.9	47	88	4	139	43	16	4	35	1.68
7513255--7513330	23	3.3	23	67	22	59	43	15	5	35	1.70
7522257--7522320	33	1.9	33	90	0	101	57	10	6	25	1.56
7522670--7522703	17	2.0	17	88	0	50	47	29	2	20	1.65
7523247--7523276	2	15.0	2	100	0	60	50	0	0	50	1.00
7526890--7526928	15	2.6	15	84	11	53	43	0	2	53	1.14
7536805--7536854	22	2.3	21	80	12	57	58	6	4	32	1.41
7537658--7537897	103	2.3	106	82	5	274	29	9	15	46	1.76
7537678--7537925	103	2.4	103	80	7	261	29	9	14	46	1.76
7538383--7538429	2	23.5	2	91	0	76	51	0	2	46	1.13
7547863--7547890	2	14.0	2	100	0	56	50	0	0	50	1.00
7548485--7548765	103	2.7	103	77	5	296	30	6	13	49	1.66
7548574--7548794	107	2.1	103	80	6	248	31	6	13	48	1.68
7560239--7560269	2	15.5	2	93	0	53	45	0	3	51	1.17
7561724--7562006	58	4.9	57	88	6	389	35	12	8	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7564461--7564512	17	3.1	16	83	8	59	78	1	1	17	0.93
7564461--7564508	23	2.1	23	88	11	73	79	2	2	16	0.93
7564904--7564937	16	2.1	17	88	5	52	52	0	0	47	1.00
7567834--7567878	14	3.2	14	80	0	54	35	2	0	62	1.08
7567831--7567878	20	2.4	20	85	0	60	37	2	0	60	1.09
7567891--7567946	27	2.1	27	83	9	71	25	3	7	64	1.35
7570595--7570638	21	2.2	20	83	4	52	11	2	34	52	1.50
7570620--7570654	14	2.5	14	90	0	52	25	5	25	42	1.77
7571412--7571468	26	2.1	27	87	9	82	36	15	0	47	1.46
7573066--7573136	25	2.7	28	75	18	80	23	4	1	70	1.13
7573552--7573639	6	14.5	6	74	17	58	17	6	0	76	1.00
7573552--7573639	5	16.8	5	77	20	83	17	6	0	76	1.00
7573553--7573644	22	4.2	22	79	18	95	17	7	0	75	1.03
7573657--7573926	59	4.7	57	81	10	300	42	7	13	35	1.73
7577835--7577887	22	2.4	21	84	6	70	79	0	11	9	0.94
7579762--7580239	41	11.5	41	81	8	358	26	16	18	38	1.92
7579762--7580240	124	3.8	121	78	12	397	26	16	18	38	1.92
7579762--7580260	42	12.0	41	78	11	350	26	16	18	37	1.92
7579762--7580260	83	6.0	83	79	11	389	26	16	18	37	1.92
7580246--7580274	14	2.1	14	100	0	58	20	20	31	27	1.98
7580204--7580316	56	2.0	56	96	0	208	24	17	22	35	1.95
7580121--7580402	139	2.0	141	88	6	421	25	16	21	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7580260--7580450	42	4.4	42	84	7	231	23	16	23	37	1.94
7580163--7580358	98	2.0	97	92	1	329	25	17	21	35	1.95
7580260--7580450	86	2.2	86	85	6	244	23	16	23	37	1.94
7580694--7580768	32	2.3	32	84	11	91	25	4	0	70	1.04
7580732--7580835	17	6.0	17	71	14	61	24	5	0	69	1.16
7580698--7580850	47	3.2	47	79	12	134	24	5	0	69	1.14
7580718--7580795	18	4.6	17	77	13	65	21	3	0	74	0.98
7580723--7580841	45	2.8	40	74	24	118	24	5	0	69	1.13
7580716--7580795	7	11.7	7	79	14	60	22	3	0	73	0.99
7581220--7581308	6	14.5	6	75	15	67	16	6	0	76	0.99
7581220--7581308	17	5.2	17	74	16	78	16	6	0	76	0.99
7581220--7581308	5	16.8	5	76	20	76	16	6	0	76	0.99
7581305--7581480	57	3.1	55	75	14	160	45	5	10	38	1.62
7582241--7582292	26	2.1	24	89	7	77	48	0	36	15	1.45
7582268--7582902	321	2.0	321	98	0	1234	40	5	23	30	1.78
7587229--7587704	238	2.0	236	91	1	774	30	23	9	36	1.87
7594264--7594334	23	3.0	23	76	19	76	45	0	1	53	1.09
7595153--7595182	15	1.9	16	93	6	53	40	0	0	60	0.97
7595309--7595357	18	2.8	18	79	20	59	48	4	0	46	1.20
7595140--7596364	181	6.8	181	76	8	943	44	5	5	44	1.51
7595458--7595492	17	2.1	17	94	0	61	54	8	2	34	1.46
7595121--7596364	361	3.5	353	77	8	1109	45	5	5	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7595140--7596364	179	6.8	178	76	9	886	44	5	5	44	1.51
7598787--7598839	21	2.5	21	93	0	88	35	15	3	45	1.64
7602608--7602685	41	1.9	41	83	0	102	32	17	20	29	1.96
7622946--7622999	26	2.1	26	100	0	108	31	27	14	25	1.95
7623309--7623404	33	2.9	33	100	0	192	60	9	5	25	1.48
7630639--7630720	43	1.9	42	82	2	101	28	9	9	52	1.66
7630972--7631065	43	2.2	42	81	9	102	34	8	10	46	1.69
7638168--7638215	12	4.0	12	94	0	78	35	31	8	25	1.85
7638938--7640256	186	7.0	186	79	7	1174	41	10	12	35	1.77
7638938--7640199	562	2.3	559	83	5	1521	41	9	12	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93