genome.fa.s190.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  62  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8413573--8413599	7	3.9	7	100	0	54	44	0	0	55	0.99
8414704--8414736	16	2.1	16	94	5	59	66	0	3	30	1.06
8414905--8414937	12	2.7	13	90	9	52	78	0	3	18	0.87
8419676--8419703	2	14.0	2	100	0	56	50	0	0	50	1.00
8421668--8422133	233	2.0	232	98	0	905	31	11	10	46	1.73
8423165--8423189	13	1.9	13	100	0	50	48	16	20	16	1.82
8423692--8423754	32	2.0	32	96	0	117	36	15	12	34	1.86
8426906--8426951	24	1.9	24	90	0	74	13	39	17	30	1.87
8430667--8430745	34	2.3	34	84	0	95	43	6	5	45	1.51
8431714--8431757	22	2.0	22	86	4	63	38	2	29	29	1.69
8434843--8434867	13	1.9	13	100	0	50	64	0	8	28	1.22
8440864--8440906	23	2.0	21	86	9	59	53	4	0	41	1.21
8441317--8441398	26	3.2	27	75	13	68	47	2	1	48	1.22
8441365--8441455	36	2.6	35	83	13	116	49	2	1	47	1.21
8451538--8451594	30	1.9	30	88	0	87	43	1	1	52	1.21
8453125--8453170	22	2.0	23	87	4	67	50	0	0	50	1.00
8461255--8461524	138	2.0	138	89	0	414	42	11	25	20	1.85
8463642--8463696	28	1.9	28	81	3	65	50	1	1	45	1.22
8463683--8463747	21	3.0	21	82	10	78	49	0	0	50	1.00
8463698--8463747	21	2.3	22	93	6	84	50	0	0	50	1.00
8463678--8463747	23	3.1	21	84	11	86	50	0	0	50	1.00
8469919--8469961	12	3.4	12	84	12	59	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8471358--8471438	25	3.4	24	74	16	71	59	0	6	34	1.23
8472007--8472031	2	12.5	2	100	0	50	52	0	0	48	1.00
8472535--8472587	22	2.4	22	77	0	61	45	1	0	52	1.11
8472624--8472664	21	1.9	22	90	5	66	46	14	0	39	1.45
8472724--8472748	2	12.5	2	100	0	50	48	0	0	52	1.00
8475252--8475309	29	2.0	29	93	0	98	27	5	12	55	1.58
8480992--8481106	54	2.2	53	84	6	144	40	6	15	38	1.72
8481311--8481376	25	2.6	25	83	9	71	42	3	12	42	1.57
8481320--8481376	25	2.2	26	84	9	73	43	3	12	40	1.59
8482291--8482347	25	2.2	26	87	9	82	38	5	10	45	1.61
8483018--8483067	15	3.3	15	86	8	57	80	2	8	10	0.99
8483037--8483074	20	1.9	20	88	0	58	78	2	13	5	1.02
8487372--8487421	25	2.0	25	96	0	91	30	8	14	48	1.72
8487475--8487501	14	1.9	14	100	0	54	33	0	0	66	0.92
8487515--8487574	28	2.1	28	81	6	68	53	5	6	35	1.49
8502478--8502527	19	2.7	18	78	6	55	40	26	12	22	1.88
8502795--8502838	22	2.0	22	82	8	54	45	0	0	54	0.99
8507946--8508001	28	2.0	28	89	0	85	35	0	1	62	1.06
8510035--8510140	53	2.0	52	94	1	185	27	11	14	47	1.78
8514512--8514598	31	2.9	31	80	6	92	24	13	10	51	1.72
8515366--8515452	30	3.0	29	76	8	86	50	8	13	27	1.70
8515622--8515648	13	2.1	13	100	0	54	37	0	22	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8516835--8516893	3	19.7	3	89	6	93	28	1	0	69	0.98
8518408--8518455	9	5.1	9	80	5	51	14	14	20	50	1.78
8518408--8518455	19	2.6	18	77	9	51	14	14	20	50	1.78
8518399--8518459	29	2.1	28	90	3	95	18	11	18	52	1.74
8518404--8518468	29	2.2	29	86	0	85	20	10	16	52	1.73
8518563--8518587	12	2.1	12	100	0	50	16	16	24	44	1.86
8522882--8522987	39	2.7	39	89	2	151	24	2	34	37	1.70
8527943--8527973	15	2.0	16	93	6	55	29	25	6	38	1.81
8541064--8541120	21	2.8	21	89	2	80	42	10	14	33	1.79
8541064--8541136	21	3.5	21	77	5	69	41	12	13	32	1.82
8546675--8546810	72	1.9	73	84	4	186	37	8	12	41	1.74
8548149--8548202	22	2.3	23	90	9	83	48	0	0	51	1.00
8553866--8553916	24	2.1	24	89	7	77	54	9	17	17	1.69
8554056--8554099	22	2.0	22	95	0	79	43	13	11	31	1.80
8558079--8558122	22	2.0	22	95	0	79	43	13	11	31	1.80
8558082--8558134	22	2.4	22	84	6	54	49	9	11	30	1.70
8563114--8563150	2	19.5	2	89	10	60	48	0	51	0	1.00
8563875--8563907	16	2.1	16	94	0	57	72	0	0	27	0.85
8571754--8571798	23	2.0	23	82	8	56	77	17	0	4	0.92
8571752--8571804	10	5.1	10	75	6	52	81	15	0	3	0.83
8573039--8573119	26	3.1	26	87	3	101	23	27	25	23	2.00
8573152--8573205	3	17.7	3	78	17	58	29	1	0	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8573152--8573209	17	3.6	17	80	13	61	27	1	0	70	0.97
8573321--8573351	15	2.1	15	100	0	62	35	32	12	19	1.90
8574184--8574232	25	1.9	26	87	4	73	63	8	2	26	1.34
8574180--8574247	25	2.9	21	76	18	55	60	5	1	32	1.30
8575773--8575867	48	2.0	48	82	0	118	38	13	12	34	1.83
8580485--8580513	2	14.5	2	100	0	58	48	0	0	51	1.00
8582378--8582463	43	2.0	43	95	0	154	31	18	31	18	1.95
8584634--8584661	2	14.0	2	100	0	56	50	0	0	50	1.00
8604650--8604683	15	2.3	15	89	0	50	61	5	0	32	1.20
8612862--8612896	17	2.1	16	89	5	52	20	0	5	74	1.02
8614929--8614982	24	2.3	23	75	9	54	48	14	0	37	1.45
8615054--8615084	15	2.0	16	93	6	55	35	0	0	64	0.94
8620596--8620627	3	10.7	3	100	0	64	34	0	0	65	0.93
8624599--8624634	4	9.0	4	100	0	72	0	25	0	75	0.81
8627569--8627597	2	14.5	2	100	0	58	0	48	0	51	1.00
8630114--8630142	3	9.7	3	100	0	58	68	0	0	31	0.89
8632773--8632824	23	2.3	23	83	10	70	34	1	0	63	1.06
8633905--8633929	2	12.5	2	100	0	50	48	0	0	52	1.00
8642256--8642305	21	2.4	21	83	3	57	48	12	36	4	1.59
8647453--8647483	12	2.6	12	94	0	53	6	35	25	32	1.82
8648093--8648140	22	2.3	22	78	7	55	4	25	0	70	1.04
8648606--8648651	20	2.3	19	82	14	56	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8648620--8648660	22	2.0	20	85	9	55	46	2	0	51	1.14
8648777--8648822	23	2.0	23	91	0	74	36	28	4	30	1.76
8652898--8652987	44	2.0	44	93	0	153	45	17	15	21	1.85
8653312--8653352	18	2.3	18	86	0	55	78	14	2	4	1.03
8654038--8654085	22	2.0	24	84	11	64	22	2	4	70	1.15
8654357--8654394	16	2.3	16	90	4	58	65	2	5	26	1.27
8654614--8654668	24	2.2	25	75	9	60	54	0	3	41	1.18
8656371--8656403	16	2.1	16	88	11	50	63	0	6	30	1.18
8656393--8656425	16	2.1	16	88	5	50	84	3	6	6	0.84
8656391--8656433	22	1.9	23	90	4	70	79	2	9	9	1.03
8656408--8656432	13	1.9	13	100	0	50	80	4	8	8	1.03
8656382--8656440	23	2.6	22	81	5	73	72	1	8	16	1.17
8656394--8656447	21	2.5	22	79	8	58	75	1	7	14	1.09
8657668--8657801	68	1.9	70	86	3	191	41	5	8	44	1.58
8657738--8657902	55	3.1	54	80	6	160	46	3	7	43	1.49
8658555--8658592	3	12.7	3	100	0	76	68	31	0	0	0.90
8660760--8660789	2	15.0	2	100	0	60	50	0	0	50	1.00
8661621--8661649	10	3.0	10	95	5	51	27	20	10	41	1.85
8661775--8661802	3	9.3	3	100	0	56	67	0	0	32	0.91
8663283--8663322	21	1.9	21	84	0	53	47	5	20	27	1.70
8665602--8665638	14	2.6	15	83	8	51	75	0	0	24	0.80
8667052--8667121	30	2.3	30	80	0	86	37	7	4	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8667257--8667296	21	2.0	21	85	5	55	60	2	5	32	1.32
8669048--8669364	156	2.0	156	100	0	634	24	14	19	41	1.89
8670212--8670296	42	2.0	42	95	0	152	28	11	21	38	1.88
8673447--8673748	148	2.0	148	98	0	586	36	6	18	38	1.78
8677113--8677157	11	3.8	12	81	18	58	68	0	2	28	1.01
8679268--8679306	15	2.3	18	83	16	57	48	0	0	51	1.00
8679381--8679457	31	2.4	34	72	16	83	48	2	3	45	1.34
8684050--8684102	11	4.9	11	77	13	56	62	1	1	33	1.17
8684158--8684194	15	2.5	15	86	4	58	62	5	8	24	1.44
8684708--8684760	24	2.2	24	83	9	65	3	13	3	79	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93