genome.fa.s190.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  83  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12874075--12874115	20	2.0	20	100	0	82	46	9	14	29	1.77
12875487--12875529	22	2.0	22	90	4	70	27	11	25	34	1.91
12876530--12876600	4	19.0	4	77	13	64	29	1	0	69	0.98
12876533--12876625	30	3.1	30	84	9	118	31	3	0	65	1.08
12876580--12876626	24	1.9	25	95	4	87	34	6	0	59	1.23
12876518--12876624	8	14.6	7	74	18	69	28	2	0	67	1.11
12877500--12877680	59	3.1	56	81	6	184	41	4	13	40	1.66
12877520--12877681	59	2.8	58	85	6	204	41	5	15	37	1.71
12879166--12879196	2	16.0	2	93	6	55	51	0	0	48	1.00
12883969--12884023	23	2.4	24	78	9	69	52	0	1	45	1.11
12886543--12886576	17	2.0	17	88	11	52	35	17	35	11	1.87
12898377--12898606	125	1.8	125	81	7	288	36	8	10	44	1.69
12898560--12898678	61	2.0	61	83	3	150	44	9	14	31	1.76
12899039--12899083	24	2.0	22	86	8	63	60	2	2	35	1.22
12900605--12900754	7	20.7	7	67	14	63	49	34	0	16	1.46
12900620--12900920	30	10.4	28	78	10	227	50	31	0	16	1.50
12900701--12900754	15	3.7	15	78	9	58	50	35	0	14	1.44
12900629--12900913	14	19.6	14	68	17	136	51	31	0	16	1.50
12900953--12900992	15	2.7	14	85	11	53	52	22	0	25	1.47
12903544--12903589	11	4.2	11	81	10	58	21	2	13	63	1.40
12904053--12904121	4	17.2	4	71	16	54	26	5	1	66	1.22
12904053--12904121	32	2.2	32	82	10	79	26	5	1	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12904210--12904580	55	6.7	55	87	4	466	47	6	9	35	1.63
12904218--12904647	55	7.7	55	84	6	431	47	7	10	34	1.65
12904487--12904701	62	3.6	61	78	8	185	47	6	10	35	1.62
12909914--12910429	259	2.0	258	90	4	814	33	7	5	53	1.52
12913640--12914067	43	9.9	43	75	6	301	44	15	14	25	1.84
12913649--12914068	87	4.9	85	79	4	371	44	15	13	25	1.84
12913657--12914066	172	2.4	172	78	6	398	45	15	13	25	1.83
12919372--12919840	59	7.7	59	83	8	520	33	13	7	45	1.72
12919372--12919839	189	2.6	181	85	8	607	33	13	7	45	1.72
12919372--12919845	248	1.9	242	85	8	656	33	12	8	45	1.72
12919917--12919990	27	2.8	25	83	10	76	78	2	5	13	1.03
12919924--12919998	35	2.1	35	85	0	96	81	2	5	10	0.95
12920316--12920360	20	2.3	20	92	3	74	28	22	22	26	1.99
12920492--12920545	25	2.2	24	83	6	63	40	18	5	35	1.74
12920962--12921061	37	2.8	35	78	15	105	65	9	0	26	1.22
12927044--12927140	45	2.2	45	84	0	122	27	5	9	57	1.51
12936973--12937008	2	18.0	2	88	0	54	50	0	47	2	1.15
12941904--12941943	20	2.0	21	85	5	55	55	2	0	42	1.13
12942199--12942240	18	2.4	18	84	4	59	69	0	0	30	0.89
12967589--12967632	20	2.1	21	83	4	54	38	4	6	50	1.50
12972169--12972224	3	19.0	3	92	3	51	66	10	0	23	1.23
12972568--12972621	24	2.3	23	84	9	65	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12980043--12980096	20	2.8	20	72	13	58	48	0	0	51	1.00
12980043--12980105	18	3.3	18	73	10	54	47	0	0	52	1.00
12980063--12980125	31	2.0	31	85	11	85	47	0	0	52	1.00
12980052--12980119	18	3.5	19	71	13	59	45	0	0	54	0.99
12980138--12980180	22	2.1	21	87	12	63	32	0	0	67	0.91
12980137--12980185	19	2.6	19	77	22	50	36	0	0	63	0.95
12989822--12989849	2	14.0	2	100	0	56	50	0	0	50	1.00
12990371--12990411	10	4.6	9	80	19	50	68	0	0	31	0.90
12991130--12991161	16	2.0	16	93	0	55	15	0	21	62	1.32
12993259--12993288	16	1.9	15	93	6	51	0	23	0	76	0.78
12997882--12997952	35	2.0	35	91	0	115	36	12	26	23	1.91
13002110--13002134	3	8.3	3	100	0	50	32	0	0	68	0.90
13011983--13012054	36	2.0	36	91	0	117	38	2	15	43	1.61
13015747--13015778	2	16.0	2	100	0	64	50	0	0	50	1.00
13018382--13018422	2	21.0	2	95	5	75	51	0	0	48	1.00
13019112--13019281	90	1.9	90	87	4	254	32	8	8	50	1.63
13020050--13020099	21	2.3	21	86	10	66	50	2	0	48	1.12
13022004--13022114	54	2.1	54	94	0	195	36	20	13	28	1.91
13025377--13025411	2	17.5	2	100	0	70	51	0	0	48	1.00
13029517--13029780	132	2.0	132	100	0	528	41	14	17	26	1.88
13031777--13031808	3	10.7	3	100	0	64	65	0	0	34	0.93
13032236--13032277	16	2.6	16	84	0	57	38	0	23	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13033686--13033880	64	3.1	62	77	7	169	41	11	13	33	1.80
13033859--13033902	22	2.0	22	86	4	61	52	9	4	34	1.54
13034321--13034577	59	4.4	59	65	19	167	36	13	19	30	1.90
13034294--13034649	176	2.0	176	97	0	676	37	13	18	30	1.89
13034939--13035025	28	3.0	29	91	5	140	36	11	12	39	1.80
13036002--13036036	17	2.0	18	88	5	54	20	2	5	71	1.19
13039618--13039691	36	2.0	37	97	2	141	66	2	14	16	1.37
13040996--13041020	8	3.1	8	100	0	50	84	0	0	16	0.63
13041047--13041128	35	2.4	34	82	8	94	46	1	2	50	1.22
13041072--13041125	18	3.1	18	70	15	51	46	0	3	50	1.19
13041253--13041278	7	3.7	7	100	0	52	61	0	0	38	0.96
13044922--13044967	20	2.3	20	96	0	83	84	8	4	2	0.83
13046191--13046494	33	9.3	33	81	4	298	31	19	14	34	1.92
13046224--13046455	64	3.6	65	83	5	202	31	19	14	34	1.91
13047151--13047197	24	2.0	24	91	0	76	31	21	17	29	1.96
13047172--13047372	87	2.3	87	82	1	242	25	21	15	37	1.93
13047346--13047396	24	2.1	24	85	0	66	23	21	19	35	1.96
13047406--13047491	37	2.3	37	83	0	109	16	23	17	43	1.88
13049107--13049150	16	2.6	17	92	3	72	56	20	0	22	1.42
13049148--13049234	16	5.3	16	74	2	66	49	28	2	19	1.60
13049253--13049363	28	3.8	29	73	10	102	49	29	0	19	1.55
13049261--13049363	14	7.1	14	70	13	66	50	30	0	18	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13049204--13049368	58	2.8	58	77	10	156	46	29	1	21	1.62
13049407--13049459	21	2.5	20	80	19	63	56	33	0	9	1.32
13051790--13051816	4	6.8	4	100	0	54	51	0	0	48	1.00
13052808--13052839	6	5.2	6	92	7	55	65	0	0	34	0.93
13052796--13052837	7	6.1	7	83	10	52	71	0	0	28	0.86
13052796--13052839	13	3.3	13	87	12	63	68	0	0	31	0.90
13055238--13055273	12	3.0	12	95	0	63	27	0	0	72	0.85
13074516--13074554	18	2.1	19	85	4	53	46	2	0	51	1.14
13077476--13077531	2	28.0	2	92	0	85	50	5	44	0	1.25
13087649--13087727	25	3.2	24	75	12	70	50	0	1	48	1.08
13088649--13088716	26	2.5	27	79	13	77	66	2	0	30	1.07
13092843--13093080	119	2.0	119	100	0	476	26	15	10	47	1.76
13096229--13096278	12	4.4	12	75	14	61	32	50	8	10	1.65
13096241--13096296	21	2.7	21	97	0	103	28	50	7	14	1.69
13099723--13099759	18	2.1	18	94	0	65	37	0	0	62	0.96
13103502--13103549	24	2.0	24	95	0	87	47	14	8	29	1.73
13121557--13121586	6	5.0	6	100	0	60	16	33	16	33	1.92
13121903--13121959	27	2.1	27	100	0	114	40	24	7	28	1.81
13123507--13123553	17	2.8	17	78	9	60	40	0	0	59	0.97
13123582--13123626	22	2.0	24	86	8	67	55	0	0	44	0.99
13125196--13125251	27	2.1	27	83	3	69	48	7	1	42	1.41
13125456--13125495	16	2.4	16	87	4	53	70	5	2	22	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13136359--13136463	39	2.7	39	95	1	185	49	1	12	36	1.51
13136397--13136463	22	3.3	22	66	33	67	50	2	10	35	1.52
13136296--13136575	150	1.9	150	81	8	345	47	4	10	37	1.57
13136412--13136682	109	2.5	110	80	7	318	47	4	8	39	1.56
13136666--13136733	20	3.4	20	97	0	127	48	0	4	47	1.22
13136666--13136744	40	2.0	39	90	4	124	51	0	3	44	1.19
13136748--13136822	37	2.0	39	86	5	109	48	5	1	45	1.33
13137673--13137703	12	2.6	12	89	0	53	58	0	0	41	0.98
13141122--13141181	27	2.3	26	88	2	84	30	1	0	68	0.99
13142835--13142869	2	17.5	2	100	0	70	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93