genome.fa.s190.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  53  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6760082--6760144	3	21.0	3	96	0	117	31	0	1	66	1.01
6760843--6760964	52	2.4	51	80	10	126	36	7	16	39	1.77
6765125--6765168	3	14.7	3	100	0	88	68	0	0	31	0.90
6766856--6766898	19	2.3	18	84	11	59	76	2	2	18	1.00
6766952--6767621	336	2.0	335	91	2	1085	49	4	9	36	1.56
6779047--6779120	38	2.0	38	84	7	98	72	6	6	13	1.25
6780234--6780289	15	3.7	15	87	0	76	66	16	1	16	1.35
6780695--6780735	2	20.5	2	100	0	82	51	0	0	48	1.00
6783430--6783735	60	5.0	63	83	7	371	33	10	7	48	1.65
6784408--6784450	22	2.0	22	86	9	61	9	16	16	58	1.63
6785413--6785499	44	2.0	44	82	4	106	37	19	12	29	1.89
6785552--6785694	59	2.4	59	80	2	153	31	22	11	34	1.89
6785712--6785833	21	5.6	21	77	7	109	38	14	6	40	1.72
6785713--6785927	67	3.2	65	75	14	197	37	15	9	38	1.79
6785734--6785941	46	4.6	46	83	4	239	37	15	9	37	1.81
6785713--6785925	21	9.5	23	72	14	81	36	15	9	38	1.80
6785734--6785923	21	8.5	21	74	14	123	35	16	9	38	1.81
6787232--6787322	10	8.0	11	69	24	55	3	18	1	76	0.98
6787232--6787322	20	4.6	19	76	13	85	3	18	1	76	0.98
6787225--6787283	26	2.2	27	82	11	68	3	22	1	72	1.08
6787232--6787288	19	3.2	17	76	11	60	1	19	1	77	0.95
6787281--6787350	15	4.3	15	69	22	52	7	20	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6787318--6787362	22	2.1	21	83	4	54	11	22	0	66	1.22
6787704--6787737	16	2.1	17	88	5	52	2	14	0	82	0.79
6790075--6790260	93	2.0	95	89	2	286	46	10	18	24	1.81
6791274--6791481	59	3.5	58	81	5	238	35	11	4	49	1.60
6791269--6791492	118	1.9	117	84	0	295	34	10	5	49	1.60
6792491--6792551	12	5.4	11	79	13	70	77	4	1	16	1.03
6792490--6792550	6	11.0	5	78	16	59	75	4	1	18	1.06
6795031--6795063	16	2.1	16	88	11	50	63	0	3	33	1.10
6795585--6795646	21	3.0	20	75	15	72	41	6	1	50	1.38
6795919--6796047	67	1.9	67	82	3	161	32	11	6	49	1.64
6796062--6796149	20	4.4	21	76	12	78	34	2	6	56	1.38
6796262--6796301	18	2.1	20	86	9	57	27	7	0	65	1.20
6795571--6796475	501	1.8	502	79	5	1051	32	9	5	52	1.57
6797402--6797441	21	2.0	20	85	5	53	50	2	0	47	1.14
6798261--6798301	21	1.9	23	85	14	61	31	2	2	63	1.20
6798632--6798696	28	2.3	26	80	17	69	52	3	0	44	1.16
6801045--6801087	19	2.2	19	87	4	59	55	9	2	32	1.44
6801897--6801943	3	15.7	3	95	0	85	31	2	0	65	1.04
6803060--6803446	208	1.9	204	81	8	473	44	6	13	35	1.70
6810702--6810755	3	18.0	3	100	0	108	66	0	0	33	0.92
6816807--6816848	20	2.0	21	86	4	59	76	7	0	16	1.00
6817191--6817310	40	3.0	40	88	0	168	42	18	16	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6817246--6817366	56	2.2	56	87	0	179	42	20	17	19	1.90
6817320--6817400	40	2.0	41	85	7	112	48	24	9	17	1.77
6819232--6819297	21	3.2	21	93	4	116	53	0	0	46	1.00
6822540--6822575	18	2.0	18	94	0	63	41	5	13	38	1.68
6830082--6830123	21	2.0	21	86	9	59	76	7	0	16	1.00
6833008--6833121	8	13.6	8	74	17	90	71	0	16	10	1.17
6833011--6833094	23	3.4	24	77	11	71	75	1	14	9	1.11
6833010--6833117	17	6.3	18	77	12	77	73	0	16	9	1.14
6837094--6837347	43	5.9	43	76	5	217	26	13	16	43	1.85
6837094--6837347	87	2.9	85	80	6	217	26	13	16	43	1.85
6837101--6837378	129	2.2	128	80	7	287	26	12	16	44	1.83
6838766--6838881	59	2.0	58	89	5	180	50	6	7	35	1.56
6840952--6840990	14	2.8	14	84	0	51	79	2	2	15	0.95
6841476--6841522	20	2.3	20	85	0	67	48	23	6	21	1.72
6844822--6844863	18	2.6	16	85	11	50	76	4	2	16	1.07
6849808--6849931	59	2.1	58	88	5	178	39	12	4	43	1.63
6850855--6850886	6	5.3	6	92	0	55	81	0	3	15	0.82
6850849--6850886	18	2.1	18	95	0	67	81	0	5	13	0.85
6850855--6850907	18	2.9	18	86	8	63	73	0	3	22	0.99
6850881--6850918	17	2.3	17	90	4	60	65	2	5	26	1.27
6850950--6850997	24	2.0	23	84	11	62	52	0	8	39	1.32
6850990--6851052	12	5.3	12	69	17	51	69	0	4	25	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6850986--6851051	22	3.0	22	76	10	71	69	0	4	25	1.07
6851234--6852027	42	18.2	45	78	7	522	40	20	14	24	1.90
6851243--6852027	132	6.0	130	75	7	492	41	20	14	24	1.90
6851234--6852027	170	4.6	176	75	7	486	40	20	14	24	1.90
6851243--6851974	86	8.4	86	74	10	384	41	20	14	23	1.89
6851283--6852027	128	5.7	129	75	8	521	40	20	15	24	1.90
6853043--6853097	14	4.2	13	80	13	60	7	10	0	81	0.86
6853043--6853097	26	2.2	25	87	9	76	7	10	0	81	0.86
6853044--6853105	21	2.9	21	88	7	81	8	11	0	80	0.90
6853043--6853103	13	4.7	13	84	13	65	8	11	0	80	0.91
6855139--6855219	40	2.0	40	100	0	162	34	19	14	30	1.92
6863565--6863842	58	4.8	58	91	1	430	37	12	6	43	1.69
6863569--6863844	117	2.4	118	91	1	448	36	12	6	44	1.67
6863862--6863894	16	2.0	16	94	5	57	87	0	0	12	0.53
6863919--6863968	4	13.2	4	85	8	61	80	2	0	18	0.82
6864608--6864688	6	12.5	6	77	12	63	71	0	4	23	1.05
6864602--6864639	18	2.1	18	95	0	67	81	0	5	13	0.85
6864611--6864769	12	12.2	13	67	21	59	64	0	5	30	1.14
6864629--6864705	14	5.3	15	76	16	72	68	0	5	25	1.10
6864611--6864769	3	50.7	3	68	19	51	64	0	5	30	1.14
6864630--6864691	20	3.2	20	88	4	83	67	0	4	27	1.10
6864604--6864700	23	4.6	19	71	20	61	72	0	6	21	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6864739--6864806	10	6.6	10	71	18	50	72	0	4	23	1.03
6866128--6866167	4	9.8	4	84	15	55	25	0	2	72	0.97
6866141--6866178	9	4.3	9	87	12	53	23	0	0	76	0.79
6866133--6866177	13	3.5	13	88	11	58	24	0	2	73	0.95
6867127--6867541	61	6.8	57	78	12	330	46	6	11	36	1.65
6867127--6867358	58	3.9	58	85	6	290	45	5	11	37	1.63
6867282--6867424	71	2.0	72	86	9	204	46	6	10	37	1.64
6868602--6868645	4	10.2	4	86	13	61	25	2	2	70	1.10
6874516--6874856	169	2.0	168	98	0	664	31	17	9	41	1.81
6878228--6878274	17	2.8	17	86	0	67	78	0	12	8	0.95
6878227--6878286	24	2.5	24	80	2	66	78	0	11	10	0.97
6878236--6878283	18	2.8	17	84	6	60	81	0	8	10	0.88
6879270--6879635	91	4.1	92	79	7	349	25	10	16	47	1.79
6879264--6879663	45	9.0	45	84	5	377	25	11	17	45	1.82
6879864--6879902	4	10.0	4	84	15	55	25	0	2	71	0.98
6879864--6879902	20	2.0	19	95	5	69	25	0	2	71	0.98
6880483--6880528	24	1.9	24	100	0	92	26	17	28	28	1.98
6880839--6881103	58	4.4	62	82	4	188	48	4	9	36	1.57
6880834--6881283	61	7.3	59	76	12	284	47	5	11	36	1.62
6880877--6881107	58	3.9	58	85	4	284	45	5	10	38	1.61
6880881--6881107	117	1.9	120	85	6	320	45	5	10	38	1.61
6881081--6881113	15	2.3	15	89	5	50	63	9	0	27	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6881023--6881164	72	2.0	72	90	2	223	46	4	11	37	1.61
6881307--6881350	19	2.3	19	88	7	63	34	9	13	43	1.76
6881252--6881402	74	2.0	74	100	0	302	39	9	13	37	1.77
6882082--6882114	14	2.3	15	89	5	50	27	3	9	60	1.42
6883618--6883885	114	2.4	114	94	0	473	32	16	14	35	1.90
6883947--6884103	79	2.0	79	92	2	262	34	16	11	37	1.85
6884005--6884055	21	2.5	21	90	3	86	37	13	9	39	1.78
6884086--6884766	71	10.0	68	72	16	365	38	14	9	36	1.79
6884086--6884449	46	7.8	46	83	6	398	37	13	10	38	1.80
6884083--6884756	117	5.9	120	73	16	369	38	14	9	37	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93