genome.fa.s190.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  67  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9411886--9412379	121	4.1	119	79	5	490	18	24	13	42	1.87
9411886--9412378	241	2.0	240	80	6	541	18	24	13	42	1.87
9412704--9412858	3	53.3	3	81	11	153	33	2	5	58	1.34
9413203--9413245	21	2.1	21	82	4	52	20	0	37	41	1.53
9413635--9413733	5	19.6	5	70	19	64	21	4	2	72	1.11
9413628--9413666	19	2.1	18	85	4	51	15	5	2	76	1.06
9413626--9413698	18	4.2	18	68	25	50	21	4	1	72	1.09
9413626--9413733	35	3.1	34	76	17	82	21	4	1	72	1.13
9414757--9414804	3	16.0	3	91	0	51	64	8	2	25	1.32
9426019--9426320	153	2.0	153	82	2	365	33	13	17	35	1.89
9430757--9430782	2	13.0	2	100	0	52	50	0	0	50	1.00
9433777--9433847	25	2.8	25	71	14	63	74	4	16	4	1.13
9437926--9437961	7	5.0	7	89	3	54	2	13	0	83	0.76
9437955--9437979	13	1.9	13	100	0	50	0	44	0	56	0.99
9439552--9439646	35	2.7	34	74	4	91	53	9	14	22	1.69
9439723--9439759	19	1.9	19	94	0	65	29	13	32	24	1.93
9439742--9439826	35	2.4	35	90	0	134	42	9	24	23	1.84
9439833--9439892	18	3.4	18	72	17	54	46	6	21	25	1.75
9439881--9439995	35	3.3	35	66	16	85	50	9	19	20	1.75
9441141--9441212	9	8.0	9	76	10	58	4	13	2	79	1.00
9441142--9441212	26	2.6	28	84	8	92	4	12	2	80	0.97
9444678--9444703	11	2.4	11	100	0	52	73	0	19	7	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9448243--9448275	10	3.3	10	100	0	66	18	39	0	42	1.50
9448361--9448431	36	2.0	36	88	0	106	18	8	23	49	1.75
9451839--9451888	15	3.4	16	78	13	54	46	32	4	18	1.67
9454155--9454218	3	21.0	3	83	3	83	62	1	3	32	1.20
9455284--9455330	3	16.3	3	86	8	71	31	2	0	65	1.04
9460778--9460819	12	3.4	12	87	9	50	83	2	9	4	0.88
9460778--9460810	11	2.8	12	86	9	50	84	0	12	3	0.72
9460778--9460819	13	3.3	13	86	3	50	83	2	9	4	0.88
9462242--9462302	21	2.8	22	82	5	79	29	22	22	24	1.99
9462467--9462536	32	2.2	33	84	7	90	40	11	12	35	1.80
9462484--9463119	33	19.6	32	70	10	314	38	17	13	30	1.89
9462583--9463022	130	3.4	126	78	8	352	37	18	14	29	1.91
9462490--9463119	65	9.7	63	72	11	246	38	17	13	30	1.89
9462490--9463007	64	8.0	64	73	11	258	37	17	14	29	1.90
9462554--9463137	130	4.5	131	74	12	345	37	18	13	29	1.89
9463094--9463169	31	2.4	31	77	2	80	38	22	11	27	1.89
9463522--9463564	7	5.9	7	84	15	52	81	2	0	16	0.79
9464641--9464670	3	10.3	3	92	7	53	70	0	30	0	0.88
9465704--9465733	3	10.0	3	100	0	60	66	0	0	33	0.92
9466245--9466294	25	2.0	26	88	4	75	50	10	2	38	1.48
9468817--9468869	13	4.1	13	85	0	70	54	18	7	18	1.67
9485281--9485338	22	2.6	22	91	2	98	13	25	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9487377--9487421	23	2.0	23	100	0	90	35	13	31	20	1.91
9488977--9489020	22	2.0	22	95	0	79	31	11	13	43	1.80
9491166--9491198	11	3.0	11	95	0	57	39	45	6	9	1.61
9501032--9501082	13	4.2	12	75	12	50	72	0	0	27	0.85
9501041--9501072	16	2.0	16	93	0	55	78	0	0	21	0.76
9501095--9501338	78	3.2	76	65	17	180	42	6	3	47	1.44
9501058--9501371	152	2.1	152	93	0	538	45	6	3	44	1.48
9502337--9502390	20	2.7	21	83	11	60	31	7	7	53	1.56
9508093--9508144	8	5.9	9	80	14	56	75	0	0	25	0.81
9508073--9508144	18	3.7	18	82	12	81	72	0	2	25	0.98
9508094--9508153	27	2.3	26	88	2	84	75	0	1	23	0.90
9508093--9508154	18	3.8	16	81	12	56	72	0	1	25	0.94
9508375--9508427	20	2.6	21	84	3	63	30	13	16	39	1.87
9508388--9508427	21	2.0	20	90	5	62	30	15	15	40	1.87
9513296--9513336	7	5.7	7	83	16	57	82	0	14	2	0.76
9514232--9514271	18	2.2	18	86	0	53	42	25	2	30	1.68
9515401--9515439	18	2.3	18	86	8	55	25	0	10	64	1.25
9516055--9516086	17	1.9	16	93	6	55	81	18	0	0	0.70
9516330--9516529	37	5.5	37	70	13	112	34	20	10	35	1.86
9516403--9516542	37	3.7	38	78	5	140	33	22	10	34	1.87
9516403--9516542	38	3.7	37	77	3	136	33	22	10	34	1.87
9518475--9518561	27	3.1	26	76	18	86	79	2	13	4	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9518457--9518519	21	3.0	20	73	17	56	77	1	14	6	1.03
9518481--9518560	14	5.9	13	73	15	65	77	2	15	5	1.04
9518474--9518571	24	4.2	22	73	19	74	77	2	16	4	1.01
9519787--9519829	17	2.4	18	88	7	70	34	4	18	41	1.71
9520081--9520174	37	2.5	37	86	6	120	29	17	10	42	1.82
9520405--9520930	42	12.7	42	76	6	356	30	17	12	39	1.86
9520405--9520912	83	6.1	82	76	5	369	29	17	12	39	1.87
9520404--9520830	125	3.4	125	79	6	334	29	17	12	40	1.87
9520968--9521052	18	4.9	17	77	11	75	82	10	4	2	0.91
9520964--9521052	20	4.7	19	74	18	71	82	11	4	2	0.91
9520991--9521067	18	4.2	18	79	15	68	80	10	7	1	0.96
9520969--9521063	32	3.0	31	78	15	79	80	11	6	2	0.99
9523003--9523053	23	2.3	22	83	12	61	23	21	7	47	1.77
9523002--9523052	11	4.6	11	77	15	52	23	21	7	47	1.77
9523931--9523983	14	3.8	14	69	0	52	45	28	3	22	1.70
9523973--9524022	19	2.5	21	81	12	61	42	38	2	18	1.61
9525431--9525490	3	20.0	3	100	0	120	33	0	0	66	0.92
9532892--9532978	34	2.6	34	77	0	102	20	18	11	49	1.78
9532986--9533074	34	2.7	33	77	6	90	35	15	5	42	1.71
9532999--9533077	34	2.4	33	87	4	113	35	16	5	43	1.70
9533135--9533320	34	5.6	34	76	5	134	19	16	13	50	1.78
9533470--9533549	35	2.3	35	85	4	110	30	13	10	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9533135--9533606	33	14.2	33	71	10	178	23	15	13	47	1.80
9533503--9533652	66	2.3	66	82	4	169	21	14	14	50	1.78
9533707--9533772	33	2.0	33	90	0	105	31	21	12	34	1.90
9533900--9533978	34	2.3	34	84	4	97	16	16	11	55	1.68
9536501--9536531	15	2.0	16	93	6	55	77	0	0	22	0.77
9542770--9542901	67	2.0	67	93	0	228	38	19	9	32	1.83
9543820--9543915	47	2.0	47	87	0	138	40	13	11	34	1.81
9545298--9545368	25	2.9	24	85	8	97	61	12	5	19	1.50
9545418--9545503	24	3.5	24	77	12	75	51	13	5	29	1.65
9546884--9546934	26	2.0	26	84	7	68	72	1	1	23	1.05
9546884--9547008	40	3.4	36	79	15	107	72	2	1	24	1.06
9546883--9547013	8	17.0	7	72	13	66	71	2	1	24	1.06
9546898--9547013	16	7.5	15	72	16	78	72	2	0	24	1.03
9546961--9547017	28	2.1	27	83	9	71	73	0	3	22	0.98
9549056--9549162	45	2.4	45	82	3	126	50	19	9	20	1.75
9549201--9549235	17	2.1	17	88	0	52	31	8	31	28	1.87
9549522--9549665	64	2.2	64	80	4	166	41	8	12	37	1.73
9549745--9549993	90	2.8	88	91	2	383	48	8	7	35	1.62
9549891--9550067	63	2.8	63	80	10	166	48	8	7	35	1.63
9549914--9550170	63	4.1	63	82	5	272	44	8	9	36	1.68
9558170--9558225	8	6.8	8	77	18	53	71	0	3	25	1.02
9560765--9560802	17	2.2	18	95	4	69	47	5	42	5	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9561808--9561879	19	3.8	19	77	0	81	40	37	5	16	1.72
9561924--9562120	7	29.9	7	72	11	105	45	34	1	18	1.59
9561925--9562126	20	10.2	20	69	12	100	46	33	1	19	1.59
9561924--9562126	13	14.9	14	70	17	99	45	33	1	19	1.59
9563195--9563246	23	2.3	23	80	6	63	67	3	5	23	1.29
9563871--9563914	17	2.6	16	79	13	52	81	6	6	4	0.97
9575456--9575523	15	4.6	15	75	15	70	77	0	20	1	0.84
9575487--9575523	18	2.1	19	85	10	51	81	0	18	0	0.70
9575999--9576050	18	2.8	18	76	21	54	80	1	11	5	0.96
9576808--9577580	411	1.9	415	84	3	1063	38	12	13	36	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93