genome.fa.s190.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  8  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922654--922706	26	2.0	26	92	0	88	28	28	18	24	1.98
922680--923186	163	3.2	158	73	11	384	19	28	30	21	1.98
923160--923212	26	2.0	26	85	7	72	26	20	22	30	1.98
923675--924053	159	2.4	159	80	3	413	18	27	30	23	1.98
924814--925277	159	2.9	157	79	5	484	20	28	29	21	1.98
925706--925783	26	3.0	26	88	0	111	25	30	17	25	1.97
925758--926575	158	5.2	159	75	4	652	19	26	29	23	1.99
925905--926462	159	3.5	159	75	5	405	20	25	29	23	1.99
925853--926575	315	2.3	317	82	1	840	19	27	29	24	1.98
927032--927084	26	2.0	26	85	7	72	24	20	20	33	1.97
928264--928319	26	2.2	26	87	6	78	28	21	17	32	1.96
928296--928661	171	2.1	170	84	4	477	20	25	30	23	1.98
930040--930092	26	2.0	26	92	7	90	26	24	20	28	1.99
930225--930548	170	1.9	171	83	3	429	21	25	30	21	1.99
930577--930629	26	2.0	26	92	0	88	28	28	18	24	1.98
930600--931106	159	3.2	158	78	5	475	20	26	28	24	1.99
931801--931853	26	2.0	26	85	7	72	30	24	15	30	1.95
932729--932779	26	2.0	26	88	0	75	27	27	17	27	1.98
932794--933083	159	1.8	158	80	3	350	19	27	31	21	1.97
934063--934115	26	2.0	26	92	7	90	26	24	20	28	1.99
935463--935515	26	2.0	26	88	0	79	28	26	18	26	1.98
935781--936146	158	2.3	158	83	4	436	19	24	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936120--936172	26	2.0	26	85	7	72	28	22	18	30	1.98
935962--936330	183	2.0	184	83	1	472	19	24	28	27	1.99
936487--936539	26	2.0	26	88	0	79	26	24	20	28	1.99
936975--937026	25	2.0	26	85	10	72	25	23	21	30	1.99
936087--937806	866	2.0	856	80	5	1894	21	25	28	24	1.99
939597--939649	26	2.0	26	92	7	90	26	24	20	28	1.99
939806--939858	26	2.0	26	96	0	97	26	28	20	24	1.99
940910--941530	159	3.9	158	79	3	629	17	28	30	23	1.97
940876--941529	317	2.1	317	83	4	802	18	27	30	23	1.98
941503--941555	26	2.0	26	89	7	81	28	24	18	28	1.98
942223--942273	26	2.0	26	92	0	84	23	23	25	27	2.00
942570--942620	26	2.0	26	88	7	77	29	23	17	29	1.97
942926--942977	26	2.0	26	92	0	86	30	23	19	26	1.98
943350--943402	26	2.0	26	89	7	81	26	22	20	30	1.98
944063--944382	171	1.9	171	84	2	437	24	26	26	23	2.00
944309--944808	158	3.2	157	78	3	547	18	28	31	21	1.97
944927--944979	26	2.0	26	92	0	88	26	26	20	26	1.99
945111--945180	26	2.7	26	91	4	115	25	22	20	31	1.98
945863--945912	26	1.9	26	92	8	84	28	26	20	26	1.99
945973--946982	354	2.8	349	79	6	981	20	26	28	25	1.99
947264--947316	26	2.0	26	89	7	81	24	24	22	28	2.00
947987--948036	26	1.9	26	87	0	73	22	28	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948013--948503	159	3.1	157	74	9	458	19	26	30	23	1.98
948489--948565	26	3.0	25	84	3	100	28	19	19	32	1.96
949721--949773	26	2.0	26	92	7	90	26	24	20	28	1.99
950428--950478	25	2.0	25	88	0	75	33	25	13	27	1.94
950525--950951	156	2.7	158	78	6	454	18	27	29	23	1.98
950925--950977	26	2.0	26	92	7	90	26	24	20	28	1.99
951672--952096	159	2.7	155	76	7	433	21	27	28	22	1.99
952870--952925	26	2.2	26	93	0	94	30	26	17	25	1.97
953577--953655	26	3.0	26	92	0	122	27	27	20	24	1.99
954101--954151	26	2.0	26	88	7	77	29	21	17	31	1.96
954501--954553	26	2.0	26	89	7	81	24	18	18	37	1.94
956123--956618	158	3.1	158	76	8	400	20	27	29	22	1.99
956592--956643	26	2.0	25	92	3	86	28	23	19	28	1.98
956801--956853	26	2.0	26	92	0	88	28	28	18	24	1.98
957144--957196	26	2.0	26	85	7	72	28	22	20	28	1.99
956534--958139	552	2.9	550	80	4	1753	21	26	26	24	2.00
957699--957748	26	1.9	26	92	8	84	24	24	20	32	1.98
957905--957957	26	2.0	26	85	7	72	32	22	15	30	1.94
957673--958060	209	1.9	209	83	4	505	22	25	26	24	2.00
958287--958337	26	2.0	26	92	0	84	29	27	17	25	1.98
958818--958868	26	2.0	26	88	7	77	29	21	19	29	1.98
959365--959416	26	2.0	26	85	7	70	28	25	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959866--959917	26	2.0	26	92	7	88	26	25	19	28	1.98
960244--960296	26	2.0	26	96	0	97	26	24	20	28	1.99
960440--960492	26	2.0	26	82	13	65	32	24	16	26	1.97
967082--967154	36	2.0	36	86	5	103	28	16	35	19	1.93
967557--967608	26	2.0	25	92	3	86	26	21	21	30	1.98
967924--968312	159	2.4	158	77	6	426	21	27	29	21	1.99
969045--969097	26	2.0	26	88	0	79	28	26	20	24	1.99
968651--969413	343	2.2	343	85	1	1001	20	28	28	22	1.98
969545--969597	26	2.0	26	89	7	81	26	22	20	30	1.98
970268--970320	26	2.0	26	96	0	97	26	28	20	24	1.99
970718--970770	26	2.0	26	85	7	72	30	20	18	30	1.97
971085--971137	26	2.0	26	89	7	81	28	24	20	26	1.99
971166--971614	159	2.8	160	79	6	491	18	28	30	22	1.97
971586--971638	26	2.0	26	89	7	81	28	20	18	32	1.97
972320--972372	26	2.0	26	92	0	88	26	30	20	22	1.98
975775--975826	25	2.0	26	89	10	81	26	25	21	26	1.99
976558--976610	26	2.0	26	89	7	81	28	24	18	28	1.98
976464--977145	353	1.9	354	81	3	818	20	27	29	22	1.98
976950--977439	159	3.1	157	73	8	436	18	27	31	22	1.97
977032--978080	159	6.5	158	69	12	457	20	27	29	23	1.99
976584--978080	653	2.3	664	82	4	1825	20	27	29	22	1.99
978229--978911	159	4.3	158	76	8	505	20	26	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978229--978911	317	2.1	317	78	5	689	20	26	28	24	1.99
978884--978936	26	2.0	26	92	7	90	30	24	16	28	1.97
979434--979486	26	2.0	26	92	7	90	26	24	20	28	1.99
980152--980204	26	2.0	26	96	0	97	26	28	20	24	1.99
980178--980679	158	3.2	157	78	6	537	19	26	30	23	1.98
980653--980705	26	2.0	26	92	0	88	26	24	18	30	1.98
981890--981941	26	2.0	25	92	3	86	26	26	21	25	1.99
988070--988122	26	2.0	26	89	7	81	28	22	18	30	1.98
988794--988846	26	2.0	26	89	7	81	30	28	16	24	1.97
989137--989189	26	2.0	26	85	7	72	24	24	20	30	1.99
989543--989595	26	2.0	26	88	0	79	28	26	18	26	1.98
989709--990108	157	2.5	156	77	7	412	21	25	29	23	1.99
990227--990279	26	2.0	26	88	0	79	28	26	18	26	1.98
990253--990616	159	2.3	158	78	6	385	19	25	31	24	1.98
989299--990755	684	2.1	684	86	2	2037	20	26	28	24	1.99
990728--990780	26	2.0	26	89	7	81	28	24	18	28	1.98
991083--991135	26	2.0	26	88	0	79	26	24	18	30	1.98
991293--991345	26	2.0	26	85	0	70	32	28	15	24	1.95
992396--992860	159	2.9	158	80	2	529	18	25	31	24	1.97
992833--992885	26	2.0	26	89	7	81	26	22	20	30	1.98
993213--993265	26	2.0	26	85	0	70	30	26	16	26	1.97
993309--993741	159	2.7	159	78	6	432	17	27	31	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993239--993730	158	3.1	157	76	6	492	17	27	31	22	1.97
993714--993766	26	2.0	26	85	7	72	28	22	18	30	1.98
993556--993977	184	2.3	184	84	0	540	21	26	28	23	1.99
993900--993950	26	2.0	26	88	7	77	29	23	17	29	1.97
994107--994159	26	2.0	26	85	0	70	30	26	18	24	1.98
992365--994465	894	2.4	873	80	6	2282	19	26	29	23	1.98
995666--995718	26	2.0	26	92	0	88	30	24	18	26	1.98
995541--996276	342	2.1	346	82	5	878	20	26	29	22	1.99
996875--996926	26	2.0	26	88	0	77	34	25	15	25	1.95
995129--999086	854	4.7	836	75	9	2700	20	26	28	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93