genome.fa.s190.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  30  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3382641--3382963	142	2.3	140	81	8	336	17	16	11	54	1.71
3383139--3384067	71	13.2	70	71	11	312	19	16	11	52	1.74
3383937--3384085	71	2.1	71	78	5	158	22	15	6	55	1.64
3384018--3384102	36	2.4	36	82	3	93	22	17	8	51	1.71
3384262--3384401	35	4.0	34	76	9	129	19	14	12	53	1.72
3384429--3384464	15	2.4	15	90	0	54	25	19	8	47	1.77
3384458--3384675	69	3.2	67	73	8	181	21	16	9	52	1.72
3384872--3385055	71	2.6	71	82	5	196	19	14	13	53	1.73
3384492--3387510	35	85.4	35	69	11	614	19	17	12	51	1.76
3385492--3385757	71	3.8	69	76	8	225	18	16	13	51	1.76
3385507--3385757	69	3.6	70	77	6	179	19	17	12	50	1.77
3385507--3385779	139	2.0	140	79	6	304	19	17	12	50	1.77
3385696--3385895	71	2.8	72	77	7	194	17	17	13	52	1.75
3385936--3386133	104	1.9	106	82	2	256	17	14	15	52	1.75
3385947--3386164	104	2.1	104	79	4	233	18	13	14	53	1.73
3386671--3387129	141	3.3	140	75	6	372	19	17	12	50	1.77
3387090--3387291	71	2.9	70	80	0	224	20	14	11	52	1.72
3386715--3387434	141	5.1	142	72	12	344	19	17	11	51	1.76
3387375--3387511	36	3.9	35	75	7	114	20	21	7	51	1.71
3387247--3387488	71	3.4	71	78	2	227	21	19	6	52	1.69
3387810--3388784	35	27.8	35	71	9	378	19	17	11	51	1.76
3388261--3388450	71	2.7	72	83	8	239	20	13	10	55	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3388689--3388844	70	2.2	69	79	7	163	19	21	10	48	1.79
3388897--3389147	35	7.2	35	73	8	179	19	16	13	50	1.78
3388891--3389218	71	4.7	70	74	9	265	18	16	14	51	1.77
3388976--3389071	34	2.8	35	80	10	117	20	23	12	42	1.86
3388906--3389164	139	1.9	140	81	5	319	19	17	13	50	1.78
3389088--3389362	71	3.9	70	73	4	212	17	20	12	49	1.78
3388911--3389518	35	17.3	35	68	10	139	18	17	13	50	1.78
3389541--3389697	71	2.2	70	79	4	165	17	15	10	56	1.67
3389601--3389695	35	2.7	35	79	6	111	20	15	7	56	1.63
3389681--3389749	36	1.9	36	85	2	95	23	14	8	53	1.68
3389843--3390317	71	6.7	70	74	6	228	17	17	11	53	1.73
3387665--3388784	35	31.9	35	71	9	356	19	17	11	50	1.76
3389808--3390351	35	15.4	35	71	8	199	18	18	11	52	1.74
3390294--3390384	35	2.6	34	81	5	92	24	14	7	53	1.66
3390388--3390660	35	7.8	34	71	11	167	18	16	12	51	1.76
3390603--3390799	71	2.8	70	82	2	232	16	14	13	55	1.70
3390495--3391008	35	14.7	35	72	11	202	17	15	13	53	1.72
3391037--3392815	35	50.4	35	68	13	140	18	16	12	52	1.74
3391211--3391394	72	2.6	70	77	11	196	15	16	14	52	1.75
3391770--3392729	459	2.1	459	89	1	1494	18	16	11	52	1.74
3392454--3392797	141	2.4	141	78	7	322	17	18	11	52	1.75
3392889--3393039	35	4.3	35	76	5	126	19	15	8	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3393051--3393162	35	3.2	34	79	3	116	17	13	13	55	1.69
3393135--3452629	35	1678.8	35	69	12	7632	19	16	11	52	1.75
3393065--3393744	35	19.3	36	70	9	159	18	16	12	52	1.73
3394332--3394488	71	2.2	72	80	8	171	24	12	10	52	1.71
3394332--3394466	36	3.8	35	74	12	114	23	11	11	52	1.71
3394334--3394487	36	4.4	33	73	16	105	23	12	11	52	1.71
3394552--3394625	36	2.1	35	84	2	94	14	14	13	56	1.67
3394566--3394800	104	2.2	104	80	5	260	18	19	10	51	1.74
3394874--3395322	142	3.2	141	78	7	355	18	16	12	52	1.75
3395408--3395600	102	1.9	101	80	3	226	18	12	12	55	1.69
3395942--3396531	246	2.4	247	80	4	604	19	16	12	51	1.76
3396503--3396696	71	2.7	72	82	7	200	20	19	7	52	1.71
3396575--3396745	71	2.4	71	78	4	184	22	17	6	53	1.67
3397301--3397447	71	2.1	71	80	10	167	21	18	10	49	1.77
3397457--3397518	19	3.5	19	65	17	60	24	11	11	53	1.69
3398051--3398318	139	1.9	140	80	3	317	20	16	11	51	1.75
3400836--3400887	17	3.1	17	71	20	54	25	7	11	55	1.61
3400813--3401076	69	3.8	67	74	9	217	21	14	11	53	1.71
3400849--3401076	104	2.2	104	82	6	273	21	14	10	53	1.70
3400807--3401090	139	2.0	138	80	2	309	21	15	11	52	1.74
3402144--3402197	17	3.1	18	71	15	58	20	9	12	57	1.63
3402386--3402702	176	1.8	176	81	4	406	17	15	13	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3403036--3403174	71	2.0	70	84	4	181	21	19	9	49	1.76
3403480--3403615	71	1.9	71	89	5	213	20	19	7	52	1.70
3404523--3404611	34	2.6	34	81	10	101	20	21	4	53	1.62
3404662--3404797	72	1.9	71	85	5	186	20	14	11	53	1.71
3404657--3405022	71	5.2	70	76	6	209	19	15	12	51	1.75
3404854--3405064	72	3.0	70	83	6	230	18	16	12	53	1.72
3406024--3406155	69	1.9	70	87	1	194	17	14	12	56	1.68
3406025--3406213	104	1.8	105	85	5	267	16	15	12	55	1.69
3406025--3406323	141	2.1	137	80	10	329	18	16	11	54	1.70
3407705--3407786	40	2.0	40	90	0	128	21	18	8	51	1.73
3407564--3407889	179	1.8	181	84	1	449	19	14	11	53	1.72
3408179--3408365	71	2.6	70	79	7	198	20	16	8	54	1.68
3408460--3408591	71	1.9	71	84	6	178	18	11	14	56	1.67
3408758--3409148	139	2.8	140	77	7	373	18	17	12	52	1.75
3409617--3409762	69	2.1	70	79	6	172	20	15	13	51	1.76
3409913--3410169	141	1.8	141	80	3	311	19	17	10	52	1.72
3409912--3410204	141	2.1	142	77	7	301	19	17	10	52	1.74
3410742--3410901	71	2.3	69	76	2	167	15	16	17	51	1.77
3410704--3411099	104	3.8	106	76	7	360	17	14	14	53	1.73
3411083--3411124	22	2.0	21	85	4	57	16	19	4	59	1.54
3410120--3412194	981	2.1	973	82	4	2539	20	16	12	50	1.76
3411841--3412055	69	3.1	70	76	9	199	21	13	12	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3414120--3414524	211	1.9	210	84	2	535	18	16	13	51	1.76
3414285--3414592	141	2.2	140	81	6	347	18	15	13	52	1.74
3414214--3414593	176	2.2	176	78	5	403	18	15	13	52	1.74
3414131--3414722	246	2.4	246	79	5	599	19	15	11	52	1.73
3414516--3414857	141	2.4	140	74	6	332	19	15	10	53	1.71
3414884--3415231	141	2.5	140	79	4	351	21	17	9	51	1.73
3415400--3416015	104	5.9	105	76	9	400	20	14	11	54	1.70
3417637--3417809	69	2.5	70	75	1	186	21	17	10	50	1.76
3418021--3418077	20	3.1	20	71	23	70	21	21	10	47	1.80
3418783--3419335	243	2.3	243	91	3	862	20	15	11	52	1.73
3420603--3420788	103	1.8	103	80	0	228	19	16	9	54	1.68
3421483--3421888	176	2.3	176	78	5	401	18	19	12	50	1.77
3424207--3452559	141	200.2	139	68	11	860	19	16	11	51	1.75
3424598--3424930	176	1.9	176	87	3	492	18	18	10	52	1.73
3425035--3425090	17	3.2	18	76	14	64	23	12	12	51	1.73
3424991--3425184	102	1.9	103	81	3	239	21	13	11	54	1.70
3425542--3425698	82	1.9	82	82	0	197	21	13	10	54	1.68
3425811--3425846	18	2.0	18	100	0	72	22	22	16	38	1.93
3425779--3425880	53	1.9	53	89	0	159	22	19	12	45	1.84
3425752--3425916	88	1.9	88	85	2	233	20	17	12	49	1.79
3425728--3425955	123	1.9	123	83	1	305	20	17	12	50	1.78
3426850--3426994	34	4.2	35	75	9	109	21	16	11	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3427432--3427810	176	2.2	174	79	7	383	20	15	10	53	1.72
3428714--3429084	176	2.1	176	79	5	383	18	16	10	54	1.70
3429216--3429453	102	2.3	106	83	5	290	21	18	9	50	1.75
3429606--3429664	19	3.3	18	72	13	59	23	10	11	54	1.67
3430867--3431358	174	2.8	174	88	4	679	17	17	12	53	1.73
3430909--3431443	71	7.7	69	72	12	249	16	17	13	52	1.74
3431927--3432026	34	2.9	34	80	4	85	21	14	13	52	1.74
3433113--3433310	104	1.9	104	81	6	240	23	13	11	52	1.72
3434413--3434525	31	3.5	31	71	20	81	16	10	14	58	1.63
3434866--3434945	34	2.3	35	84	2	99	15	18	13	52	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93