genome.fa.s190.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  4  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512659--518513	871	6.7	869	84	5	7070	26	24	23	26	2.00
517593--517646	26	2.1	26	89	0	81	29	22	20	27	1.98
518488--518539	25	2.0	26	85	10	72	23	21	23	32	1.98
521230--521282	26	2.0	26	96	0	97	26	22	24	26	2.00
522084--522134	26	2.0	26	88	0	75	31	19	19	29	1.97
529526--529578	26	2.0	26	88	0	79	26	22	22	28	1.99
530423--532813	890	2.7	889	86	2	3321	25	23	23	27	2.00
532183--532238	26	2.2	26	90	0	85	28	19	21	30	1.98
532846--532898	26	2.0	26	92	0	88	28	22	22	26	1.99
532813--537039	886	4.7	892	86	3	5706	25	23	23	26	2.00
537213--537291	26	3.0	26	90	0	131	27	18	24	29	1.98
538124--538176	26	2.0	26	92	0	88	26	22	22	28	1.99
538993--539045	26	2.0	26	88	0	79	28	20	22	28	1.99
543872--543924	26	2.0	26	92	0	88	26	22	22	28	1.99
541755--556066	897	16.1	896	86	3	18200	25	23	24	26	2.00
547882--547940	27	2.2	27	81	6	66	57	10	5	27	1.52
550095--550147	26	2.0	26	88	0	79	26	20	22	30	1.98
551876--551928	26	2.0	26	88	0	79	28	22	22	26	1.99
552774--552826	26	2.0	26	92	0	88	26	26	20	26	1.99
553649--553701	26	2.0	26	88	0	79	26	24	22	26	2.00
554539--554591	26	2.0	26	92	0	88	28	22	22	26	1.99
562073--562125	26	2.0	26	88	0	79	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563689--564158	248	1.9	249	84	5	628	22	25	27	24	2.00
565195--566032	417	2.0	418	89	1	1286	33	19	18	27	1.96
567296--567328	11	3.0	11	95	0	57	18	33	36	12	1.88
565609--567962	888	2.6	886	87	2	3301	26	24	23	25	2.00
567912--570447	894	2.8	888	87	2	3529	26	24	23	26	2.00
570618--570670	26	2.0	26	81	0	61	32	28	13	26	1.93
572140--572192	26	2.0	26	96	0	97	26	24	22	26	2.00
571007--574823	886	4.3	893	90	2	5596	24	24	24	25	2.00
573015--573067	26	2.0	26	89	7	81	26	24	22	26	2.00
573900--573952	26	2.0	26	89	7	81	26	24	22	26	2.00
575043--575083	14	2.9	15	82	10	59	78	9	0	12	0.98
575043--575085	13	3.1	14	83	10	61	76	9	0	13	1.01
575044--575105	11	4.9	13	77	15	60	79	8	1	11	1.01
575051--575106	23	2.4	23	84	3	76	80	7	1	10	0.97
575049--575106	13	4.4	13	77	2	53	81	6	1	10	0.95
575992--576033	18	2.3	18	80	8	50	21	2	0	76	0.90
576440--576506	17	4.0	17	77	9	66	49	29	1	19	1.57
582754--582795	22	1.9	22	100	0	84	14	38	23	23	1.92
588034--588086	26	2.0	26	92	0	88	26	22	22	28	1.99
589966--590018	26	2.0	26	85	0	70	28	24	18	28	1.98
592452--592504	26	2.0	26	89	7	81	30	24	18	26	1.98
590685--598226	894	8.5	894	85	3	9574	25	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594237--594288	25	2.0	26	92	3	88	26	23	23	26	2.00
598559--598611	26	2.0	26	85	7	72	30	22	18	28	1.98
606420--606472	26	2.0	26	96	0	97	28	26	18	26	1.98
608967--609019	26	2.0	26	85	7	72	30	22	18	28	1.98
607860--609414	780	2.0	779	86	3	2186	23	24	25	26	2.00
610229--611244	523	2.0	518	87	4	1481	27	21	24	26	1.99
613110--624155	900	12.5	860	84	5	12029	26	23	23	26	2.00
617116--617168	26	2.0	26	81	0	61	28	22	22	26	1.99
618867--618918	25	2.0	26	92	3	88	26	23	23	26	2.00
620665--620720	26	2.2	26	86	0	76	30	19	21	28	1.98
621562--621614	26	2.0	26	85	0	70	28	18	22	30	1.98
622462--622514	26	2.0	26	92	0	88	28	22	22	26	1.99
623351--623403	26	2.0	26	92	0	88	28	22	22	26	1.99
624258--624330	26	2.8	25	89	4	110	30	15	23	31	1.95
630804--630856	26	2.0	26	89	7	81	26	22	24	26	2.00
631683--631735	26	2.0	26	92	0	88	26	20	26	26	1.99
633436--633488	26	2.0	26	88	0	79	28	20	22	28	1.99
634313--634365	26	2.0	26	88	0	79	28	16	26	28	1.97
633021--643044	898	11.4	883	85	5	11951	25	23	23	26	2.00
638767--638819	26	2.0	26	96	0	97	26	22	24	26	2.00
646278--646328	26	2.0	26	88	0	75	25	11	29	33	1.91
646997--647049	26	2.0	26	88	0	79	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647498--647930	159	2.7	159	75	5	419	23	28	28	20	1.99
648825--648877	26	2.0	26	85	7	72	26	20	24	28	1.99
649304--649356	26	2.0	26	92	7	90	28	20	24	26	1.99
649936--649975	11	3.6	11	83	12	55	12	27	35	25	1.92
650057--650109	26	2.0	26	85	7	72	30	15	24	30	1.95
650090--650529	159	2.8	156	72	7	375	25	29	26	19	1.98
650559--650611	26	2.0	26	92	0	88	24	15	28	32	1.95
650940--650992	26	2.0	26	85	7	72	28	18	24	28	1.98
657827--657879	26	2.0	26	88	0	79	30	18	24	26	1.98
657861--658348	159	3.1	158	74	9	380	23	29	27	18	1.98
658329--658381	26	2.0	26	92	0	88	24	18	28	28	1.98
658697--658749	26	2.0	26	89	7	81	28	15	24	32	1.95
658168--658834	368	1.8	355	82	7	840	23	27	27	21	1.99
659168--659226	26	2.3	26	88	5	86	23	16	28	30	1.97
659899--659948	26	1.9	26	84	8	66	32	18	24	26	1.97
659924--660394	159	3.0	158	74	5	421	24	30	26	19	1.98
660242--660807	184	3.0	183	76	8	535	24	28	25	21	1.99
660597--660649	26	2.0	26	89	7	81	30	20	22	26	1.98
660394--660755	196	1.8	196	82	1	456	25	27	25	21	1.99
661099--661151	26	2.0	26	92	0	88	22	20	30	26	1.98
659897--661889	698	2.9	681	82	3	2249	24	28	26	20	1.99
660940--661487	184	3.0	182	76	7	473	24	28	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661784--661836	26	2.0	26	88	0	79	26	18	26	28	1.98
662517--662569	26	2.0	26	89	7	81	28	18	24	28	1.98
663573--663625	26	2.0	26	89	7	81	26	18	26	28	1.98
664294--664346	26	2.0	26	92	7	90	28	20	24	26	1.99
664851--665353	159	3.2	158	77	4	521	24	31	25	18	1.98
665329--665379	26	2.0	26	92	0	84	27	19	27	25	1.99
665657--666178	158	3.3	158	72	6	333	23	29	26	20	1.99
666152--666204	26	2.0	26	92	7	90	26	20	26	26	1.99
666988--667037	26	1.9	26	88	8	75	36	20	18	26	1.95
667330--667387	27	2.2	26	81	9	73	27	15	24	32	1.95
667541--667593	26	2.0	26	85	7	72	32	20	20	26	1.98
667566--667808	128	1.9	128	85	1	335	26	28	26	18	1.98
667853--667905	26	2.0	26	92	0	88	22	20	30	26	1.98
668062--668114	26	2.0	26	89	7	81	28	18	24	28	1.98
667165--668164	521	1.9	522	83	3	1298	25	26	26	22	2.00
668087--668467	158	2.4	158	76	3	399	24	28	26	19	1.99
668707--668736	12	2.5	12	94	0	51	3	40	30	26	1.72
668939--669008	26	2.7	26	97	0	131	30	15	24	30	1.96
668982--669383	159	2.5	157	78	5	387	23	29	27	19	1.98
670179--670231	26	2.0	26	96	0	97	32	20	20	26	1.98
670398--670450	26	2.0	26	92	0	88	24	18	28	28	1.98
671080--671132	26	2.0	26	96	0	97	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671944--671996	26	2.0	26	88	0	79	28	20	24	26	1.99
672813--672865	26	2.0	26	88	0	79	24	24	26	24	2.00
672247--673245	354	2.8	357	80	6	1061	22	27	27	21	1.99
673168--673220	26	2.0	26	89	7	81	30	20	22	26	1.98
673500--673551	25	2.0	26	88	3	79	26	19	25	28	1.98
674205--674257	26	2.0	26	89	7	81	28	18	24	28	1.98
682178--682230	26	2.0	26	89	7	81	28	18	24	28	1.98
682359--682696	159	2.1	158	79	7	382	24	30	26	18	1.98
682678--682730	26	2.0	26	88	0	79	24	20	28	26	1.99
683045--683095	26	2.0	26	84	7	68	29	17	21	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93