genome.fa.s190.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  27  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3247369--3247832	35	13.3	35	71	13	170	51	10	16	21	1.74
3247441--3247765	104	3.1	105	75	9	263	51	10	15	21	1.74
3247739--3247832	36	2.7	35	81	3	107	51	11	18	19	1.76
3247812--3247854	22	2.0	22	90	0	68	48	11	16	23	1.78
3247833--3248889	35	29.8	36	71	13	305	50	11	17	20	1.76
3247775--3247889	57	2.0	58	83	5	144	51	11	14	22	1.74
3247625--3248065	233	1.9	232	80	6	516	50	10	17	21	1.76
3248477--3248765	104	2.8	105	76	11	286	49	14	16	18	1.79
3249261--3250099	35	23.9	34	70	9	289	52	13	15	19	1.74
3250131--3250472	35	9.7	35	74	12	132	53	11	16	17	1.72
3250449--3250541	34	2.7	34	83	3	105	53	11	15	19	1.72
3250290--3250486	105	1.9	104	81	7	238	54	10	15	19	1.69
3250449--3250632	35	5.3	34	75	6	129	52	11	17	19	1.74
3250431--3250681	104	2.4	105	79	4	256	50	11	17	19	1.76
3250518--3250739	35	6.3	35	76	5	160	52	12	17	18	1.75
3251193--3251723	105	5.0	105	75	7	387	51	10	16	21	1.74
3251350--3251521	72	2.4	69	81	3	209	52	10	16	20	1.73
3250943--3253614	35	75.8	35	69	11	283	51	11	16	20	1.75
3251268--3251715	211	2.1	210	79	5	458	51	9	16	22	1.73
3252534--3253464	106	8.8	104	72	10	380	52	12	16	18	1.75
3253437--3253510	32	2.2	34	85	7	98	54	9	14	21	1.69
3253835--3254092	35	7.3	35	72	6	150	53	13	16	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3253918--3254104	71	2.7	70	81	10	213	56	13	14	15	1.67
3254114--3254253	35	3.9	35	77	9	131	49	10	18	22	1.77
3254103--3254262	34	4.5	35	75	12	128	48	10	18	23	1.79
3254436--3254862	35	12.3	35	71	10	198	53	11	14	20	1.71
3254511--3254951	102	4.2	105	75	9	289	53	11	15	19	1.73
3254805--3254886	36	2.3	35	85	10	105	50	19	18	12	1.78
3254871--3255021	35	4.3	35	76	7	137	49	13	16	20	1.79
3255026--3255990	35	27.2	35	70	12	232	50	12	17	19	1.77
3255370--3255679	71	4.4	69	74	8	234	52	10	16	20	1.73
3255385--3255564	69	2.6	69	78	10	170	52	8	17	22	1.71
3255578--3255670	34	2.6	36	79	8	109	53	13	12	19	1.72
3255491--3255992	104	4.8	103	74	10	303	51	12	16	19	1.75
3257119--3257199	41	2.0	41	85	4	110	53	4	13	28	1.61
3257292--3257423	71	1.9	70	83	1	174	50	14	19	15	1.79
3257399--3257491	36	2.7	34	76	15	86	55	11	18	13	1.68
3256149--3257588	35	40.9	35	70	10	319	52	12	16	19	1.74
3257577--3257613	19	1.9	19	94	0	65	45	8	16	29	1.76
3257865--3258071	35	5.9	36	75	7	178	52	12	17	18	1.75
3257869--3258071	105	1.9	104	81	3	237	52	12	16	18	1.74
3258079--3258189	34	3.2	35	83	3	127	49	8	19	22	1.74
3258107--3258207	34	2.9	35	84	7	109	48	10	16	23	1.78
3258511--3258636	33	3.9	31	76	15	105	53	11	18	17	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3258451--3258699	135	1.8	135	81	8	310	53	11	18	17	1.73
3258451--3258788	35	9.8	33	73	15	176	52	11	18	17	1.73
3258511--3258636	63	2.0	63	84	4	164	53	11	18	17	1.72
3258451--3258753	135	2.2	135	79	10	305	53	11	18	16	1.73
3258951--3259071	35	3.4	35	78	6	102	51	11	18	19	1.76
3259214--3261316	35	59.4	35	71	7	595	51	12	16	19	1.75
3259264--3259540	141	2.0	142	82	6	348	51	10	18	19	1.74
3259299--3259752	141	3.2	139	77	8	425	53	11	15	19	1.72
3260113--3260244	71	1.9	71	87	3	194	56	12	12	18	1.68
3260402--3260859	141	3.2	141	78	5	383	51	12	16	18	1.75
3260556--3260856	106	2.8	101	75	11	248	52	13	15	18	1.74
3260485--3261153	141	4.7	139	73	9	444	52	12	16	18	1.75
3260899--3261094	71	2.8	70	74	11	166	51	14	16	17	1.76
3261038--3261290	71	3.6	69	75	8	181	52	12	15	19	1.73
3261238--3261397	83	1.9	82	83	1	203	55	10	13	21	1.66
3261436--3261704	106	2.5	106	80	3	274	54	12	15	16	1.71
3261441--3261710	141	1.9	140	80	6	314	55	12	15	16	1.69
3261891--3264532	105	25.0	103	68	15	316	51	11	17	19	1.75
3260333--3262372	35	58.6	35	69	11	384	51	12	16	19	1.75
3262399--3262635	35	6.8	35	70	8	142	50	10	18	20	1.76
3262533--3264500	105	18.7	105	72	9	995	51	11	17	19	1.75
3262737--3269265	35	183.7	35	68	12	685	52	11	16	19	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3264635--3264794	82	1.9	83	83	6	209	55	8	13	21	1.65
3265018--3265337	141	2.3	141	80	8	348	54	11	13	20	1.70
3264729--3265711	106	9.3	102	72	10	362	52	11	15	19	1.73
3266319--3267530	106	11.5	107	70	11	408	52	11	16	19	1.73
3267842--3268698	106	8.1	103	74	11	440	52	10	17	19	1.73
3267770--3268029	141	1.8	141	81	9	325	55	11	16	16	1.68
3267756--3268168	141	2.9	139	77	9	324	53	10	16	19	1.72
3268073--3268702	141	4.5	140	75	10	378	51	10	17	21	1.73
3268625--3268780	82	1.9	82	88	2	233	58	8	13	19	1.61
3272545--3272585	20	2.0	21	85	4	57	63	12	0	24	1.28
3276080--3278543	35	70.0	35	70	11	520	52	11	16	19	1.74
3276092--3282127	35	171.9	35	69	12	462	52	12	16	19	1.75
3276269--3276711	106	4.2	103	77	10	371	53	11	16	18	1.72
3277223--3277564	187	1.8	187	81	6	424	52	10	16	19	1.72
3277795--3277988	106	1.8	105	82	5	248	55	12	13	18	1.69
3277398--3277987	281	2.1	281	77	5	602	52	12	16	19	1.74
3278622--3291188	70	178.2	69	68	12	1160	51	11	16	19	1.75
3278964--3279193	106	2.2	104	81	5	264	55	12	12	19	1.68
3279129--3279175	19	2.7	18	77	12	53	63	8	8	19	1.48
3279377--3279575	34	5.8	33	76	9	145	52	15	16	15	1.75
3279270--3279613	137	2.5	137	76	12	324	52	15	15	15	1.75
3279361--3279613	68	3.7	68	82	13	258	52	15	15	16	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3278932--3282194	35	93.5	35	70	12	514	51	12	16	19	1.75
3281194--3281997	106	7.6	106	74	12	423	52	12	16	18	1.75
3281059--3282152	316	3.5	315	77	6	874	51	12	17	19	1.76
3281017--3328546	35	1341.7	36	67	14	3713	51	12	16	19	1.75
3282244--3282602	106	3.4	104	76	7	242	50	11	18	19	1.76
3282725--3282948	114	2.0	114	97	0	421	52	10	13	23	1.71
3283575--3283688	36	3.2	35	75	10	124	54	14	16	14	1.72
3285422--3285560	71	2.0	70	85	1	188	55	10	12	20	1.67
3285832--3285892	32	1.9	32	86	0	86	57	8	16	18	1.63
3285975--3286023	15	2.8	17	75	25	57	63	4	12	20	1.45
3285798--3286170	106	3.6	105	74	8	260	54	10	14	19	1.69
3285926--3286264	141	2.4	138	80	6	333	53	12	14	19	1.72
3286754--3287086	141	2.4	142	78	9	342	48	11	21	19	1.79
3286972--3287363	176	2.2	177	80	4	470	53	11	16	18	1.73
3287227--3287282	16	3.2	17	69	14	51	55	12	10	21	1.67
3287059--3287368	141	2.2	141	78	5	324	53	11	16	19	1.72
3287576--3287883	107	2.9	105	76	6	257	53	9	15	21	1.70
3288556--3288812	136	1.9	137	80	5	306	52	12	16	19	1.75
3289358--3289556	104	1.9	103	80	7	233	52	13	11	22	1.72
3290431--3290755	176	1.8	177	79	5	381	52	12	15	19	1.74
3291190--3291775	243	2.4	243	78	7	548	50	12	17	18	1.77
3291363--3291619	138	1.9	140	83	6	344	50	13	18	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3292683--3292717	17	2.1	17	100	0	70	71	5	11	11	1.30
3292946--3293077	71	1.9	70	82	4	167	49	12	18	20	1.79
3293126--3293404	106	2.6	105	78	2	254	52	12	16	18	1.74
3293240--3293701	211	2.2	210	79	5	504	51	12	16	18	1.75
3293675--3293723	25	2.0	25	87	0	71	36	20	22	20	1.95
3293728--3293881	71	2.2	70	82	1	182	52	8	16	22	1.70
3294286--3294799	106	4.9	103	75	9	337	52	12	16	19	1.74
3295601--3296933	106	12.6	105	70	9	342	52	11	16	19	1.74
3296664--3296887	71	3.2	70	81	6	224	53	11	16	19	1.72
3296758--3296946	103	1.8	104	87	3	283	52	12	13	20	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93