genome.fa.s190.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  82  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12717879--12717935	30	1.9	30	85	0	78	45	0	1	52	1.11
12717908--12717959	22	2.5	22	93	6	90	50	0	0	50	1.00
12722520--12722561	22	1.9	22	85	0	57	52	16	16	14	1.75
12727038--12727070	2	16.5	2	93	0	57	48	3	0	48	1.17
12737558--12737599	13	3.2	13	77	12	50	50	0	0	50	1.00
12738172--12738228	30	1.9	30	85	7	80	29	1	10	57	1.42
12738188--12738255	30	2.3	30	84	2	84	30	1	13	54	1.48
12745396--12745429	12	3.1	11	88	12	52	91	0	8	0	0.43
12746459--12746497	2	19.5	2	100	0	78	48	0	0	51	1.00
12746941--12746968	3	9.3	3	100	0	56	67	0	32	0	0.91
12747557--12747593	2	18.5	2	88	0	56	45	0	5	48	1.25
12748164--12748264	2	50.5	2	100	0	202	0	0	49	50	1.00
12748395--12748427	14	2.3	15	89	5	50	69	0	0	30	0.88
12752863--12752924	13	5.3	12	70	20	51	56	0	0	43	0.99
12763331--12763362	2	16.0	2	100	0	64	50	0	0	50	1.00
12765430--12765472	21	2.0	22	86	4	61	65	0	0	34	0.93
12773264--12773307	13	3.2	14	84	12	56	36	0	0	63	0.95
12773389--12773433	21	2.1	22	83	4	56	44	22	20	13	1.85
12773697--12773769	21	3.3	23	70	12	64	50	0	1	47	1.09
12773749--12773817	31	2.4	29	78	17	74	50	1	0	47	1.09
12773755--12773811	15	3.5	17	73	24	59	49	1	0	49	1.11
12773794--12773840	23	2.0	23	95	0	85	42	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12773842--12773904	7	9.9	7	71	22	50	52	0	0	47	1.00
12773789--12773899	32	3.6	31	77	13	97	48	0	0	50	1.06
12773794--12773910	13	10.0	12	68	24	63	47	0	0	52	1.06
12774073--12774103	2	15.5	2	100	0	62	51	0	0	48	1.00
12776160--12776188	2	14.5	2	100	0	58	0	48	0	51	1.00
12786422--12786452	16	1.9	16	93	0	53	16	6	22	54	1.64
12787388--12787417	14	2.1	15	93	6	53	33	16	3	46	1.64
12787542--12787661	59	2.0	59	90	0	186	30	15	23	30	1.96
12788856--12788888	5	6.4	5	96	3	57	81	0	0	18	0.68
12794109--12794141	11	2.9	11	95	4	57	54	0	0	45	0.99
12794086--12794141	10	5.1	12	81	12	59	53	0	0	46	1.00
12794110--12794173	11	4.9	14	78	14	50	48	1	1	48	1.20
12794182--12794232	16	3.3	16	79	15	63	64	0	0	35	0.94
12794242--12794310	35	1.9	36	88	5	104	46	2	0	50	1.16
12805228--12805259	2	15.5	2	93	6	55	46	0	3	50	1.17
12805850--12805902	21	2.4	24	79	20	71	56	0	0	43	0.99
12807266--12807307	20	2.1	20	90	0	66	35	0	0	64	0.94
12810661--12810970	55	5.6	56	73	10	190	55	10	3	30	1.52
12810854--12811061	20	10.6	20	76	16	168	55	12	3	28	1.53
12810867--12811006	41	3.4	41	89	1	201	55	12	2	28	1.51
12811013--12811058	23	2.0	23	87	4	67	58	10	4	26	1.50
12811048--12811073	12	2.2	12	100	0	52	50	7	7	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12810940--12811088	55	2.7	55	85	4	185	57	12	3	26	1.50
12811099--12811144	14	2.9	16	81	18	53	60	10	6	21	1.52
12810830--12811133	154	2.0	154	79	5	330	55	11	3	28	1.53
12812013--12812272	42	6.1	42	80	8	251	40	16	12	29	1.86
12812025--12812263	83	2.8	80	83	6	271	39	16	12	30	1.87
12813942--12814721	390	2.0	390	100	0	1560	36	10	13	40	1.79
12818264--12818431	56	2.9	57	83	9	243	33	13	7	45	1.71
12818456--12818567	12	9.3	11	70	23	50	73	3	3	19	1.13
12818452--12818519	6	11.3	6	71	22	54	79	1	4	14	0.96
12818542--12818568	4	6.8	4	100	0	54	74	0	0	25	0.83
12819019--12819056	19	2.0	19	89	0	58	34	23	13	28	1.92
12819400--12819444	22	2.1	22	87	4	65	68	0	6	24	1.13
12819408--12819462	22	2.5	22	87	0	74	65	1	5	27	1.25
12819472--12819599	28	4.5	29	66	19	74	68	3	3	25	1.18
12819467--12819522	22	2.6	21	83	11	69	76	1	1	19	0.96
12819481--12819613	26	4.7	27	68	20	76	68	3	4	24	1.22
12819569--12819597	11	2.5	12	94	5	51	79	0	0	20	0.74
12819759--12819868	1	110.0	1	75	0	85	1	0	10	86	0.70
12819754--12819868	13	8.7	13	81	10	126	1	1	11	85	0.76
12819759--12819867	19	5.6	18	79	18	112	1	0	11	86	0.70
12819899--12820011	41	2.7	42	93	6	194	38	23	15	23	1.92
12819996--12820025	14	2.1	14	100	0	60	33	26	6	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12819954--12820067	56	2.0	56	98	0	219	36	23	14	25	1.92
12820010--12820270	42	6.2	42	93	1	418	37	22	16	22	1.93
12819875--12820270	139	3.0	135	84	10	535	36	23	16	23	1.94
12821449--12821485	18	2.1	18	94	0	65	8	10	0	81	0.89
12821449--12821511	21	3.3	19	78	10	65	7	14	1	76	1.08
12821445--12821511	19	3.6	18	74	21	57	7	16	1	74	1.11
12825258--12825286	14	2.1	14	93	6	51	72	6	0	20	1.07
12825323--12825612	60	4.7	59	83	11	352	33	12	7	46	1.70
12825430--12825627	67	3.1	65	82	8	262	32	10	7	50	1.63
12825323--12825627	127	2.5	125	85	8	403	32	11	7	47	1.68
12825502--12825628	60	2.1	60	88	4	193	32	9	7	50	1.64
12826279--12826327	25	1.9	25	91	4	80	40	16	4	38	1.67
12826603--12826647	22	2.1	22	83	4	56	66	0	8	24	1.20
12826612--12826665	22	2.5	21	82	8	63	62	1	7	27	1.32
12826672--12826720	13	3.7	13	79	15	55	79	2	2	16	0.92
12826672--12826723	26	2.0	26	88	7	79	78	1	1	17	0.93
12826670--12826720	20	2.5	21	84	15	72	78	1	1	17	0.94
12826672--12826723	7	7.7	7	77	14	56	78	1	1	17	0.93
12826774--12826803	6	4.8	6	95	4	51	80	0	0	20	0.72
12830672--12830697	12	2.2	12	100	0	52	50	15	7	26	1.71
12830647--12830738	36	2.5	36	87	5	123	51	14	5	29	1.64
12830745--12830791	18	2.6	18	83	6	60	51	12	4	31	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12831103--12831183	20	4.3	18	75	15	67	55	7	4	32	1.49
12831121--12831183	20	3.1	20	77	11	74	53	7	4	33	1.51
12831119--12831251	55	2.4	55	81	10	157	52	9	6	32	1.57
12832978--12833034	25	2.3	25	82	8	71	54	5	7	33	1.50
12833031--12833082	26	2.0	27	84	3	70	51	0	1	46	1.12
12836450--12836484	2	18.0	2	94	5	63	51	0	0	48	1.00
12838831--12838912	43	1.9	43	87	0	119	26	19	14	39	1.90
12842999--12843211	62	3.5	62	77	11	213	37	11	12	38	1.79
12844937--12844971	16	2.1	16	89	5	52	62	0	2	34	1.10
12849361--12849390	5	6.2	5	92	7	53	36	0	0	63	0.95
12849363--12849392	9	3.2	9	95	4	51	36	0	0	63	0.95
12851065--12851098	2	17.0	2	100	0	68	50	50	0	0	1.00
12853466--12853515	21	2.5	20	80	3	55	56	12	2	30	1.47
12853460--12853515	10	5.6	10	81	6	60	55	10	1	32	1.45
12858145--12858235	39	2.3	40	78	17	109	18	8	3	69	1.29
12860060--12860128	17	4.2	17	71	14	56	14	4	1	79	0.95
12860061--12860141	22	3.6	22	73	14	51	16	4	1	77	1.00
12860073--12860141	27	2.6	26	81	9	68	15	4	1	78	0.98
12860100--12860146	17	2.8	17	84	12	53	19	4	0	76	0.95
12860158--12860565	177	2.3	177	87	5	590	43	6	13	36	1.70
12860149--12860565	59	7.0	59	80	11	424	44	6	13	35	1.70
12862289--12862424	62	2.2	62	82	5	159	34	9	16	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12863758--12863791	17	2.0	17	88	0	50	47	0	2	50	1.16
12864233--12864267	16	2.1	16	89	5	52	62	0	2	34	1.10
12865006--12865076	34	2.1	33	86	2	97	15	15	30	38	1.89
12867845--12867871	4	6.8	4	100	0	54	74	0	0	25	0.83
12867886--12867948	29	2.3	26	75	17	63	49	1	1	47	1.20
12867910--12867954	18	2.5	20	75	17	53	51	2	0	46	1.13
12870421--12870450	2	15.0	2	100	0	60	50	0	0	50	1.00
12871902--12871944	22	2.0	21	82	13	52	11	11	2	74	1.17
12872831--12872855	2	12.5	2	100	0	50	52	0	0	48	1.00
12873013--12873063	22	2.3	22	83	16	70	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93