genome.fa.s190.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  39  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4668563--4668624	25	2.4	26	83	2	81	46	0	4	48	1.23
4669026--4669109	29	2.7	31	78	10	100	50	2	3	44	1.32
4669195--4669231	20	1.9	18	89	10	56	48	2	0	48	1.15
4670383--4670412	14	2.1	14	93	0	51	66	16	0	16	1.25
4670469--4670785	106	3.0	104	77	8	302	45	17	11	24	1.83
4670987--4671033	3	15.7	3	100	0	94	65	0	0	34	0.93
4671504--4671612	15	7.1	15	72	14	89	45	0	0	53	1.06
4671504--4671583	19	3.9	22	70	15	55	46	0	0	53	1.00
4671494--4671621	61	2.0	66	88	7	194	48	0	0	50	1.06
4671523--4671622	42	2.4	42	82	9	118	49	0	1	50	1.07
4671497--4671620	10	12.3	11	67	24	51	47	0	0	51	1.06
4671476--4671626	61	2.6	58	81	12	182	47	0	1	50	1.09
4675455--4675497	8	5.4	8	78	10	52	51	25	2	20	1.60
4675445--4675530	16	5.4	16	76	8	77	46	29	3	20	1.67
4676551--4676576	13	2.0	13	100	0	52	46	7	0	46	1.31
4688123--4688235	35	3.2	35	85	0	136	21	19	10	48	1.78
4688140--4688254	35	3.3	35	85	2	106	20	19	9	51	1.74
4688914--4688987	7	10.7	7	83	11	64	78	13	0	8	0.96
4688928--4688987	14	4.3	14	87	8	86	76	13	0	10	1.01
4688927--4688992	21	3.2	21	89	8	100	77	12	0	10	1.00
4691792--4691840	23	2.1	23	88	7	73	57	26	0	16	1.40
4691831--4691890	16	3.8	16	77	0	66	45	25	6	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4696323--4696450	62	2.1	62	96	0	238	23	10	21	44	1.83
4700956--4701007	21	2.4	21	87	9	70	7	19	3	69	1.29
4700970--4701017	22	2.2	22	82	10	55	12	22	6	58	1.57
4709112--4709197	20	4.4	20	75	13	72	70	2	2	24	1.10
4716074--4716116	22	1.9	22	90	4	68	51	4	6	37	1.50
4716274--4716364	19	5.1	19	71	18	70	46	1	0	52	1.07
4716291--4716372	16	4.9	16	76	14	67	47	0	0	52	1.00
4716336--4716408	25	2.9	25	82	8	85	47	1	2	47	1.24
4716976--4717009	17	2.0	17	88	0	50	73	2	2	20	1.09
4717525--4717571	23	2.0	23	84	8	60	29	4	4	61	1.34
4717623--4717669	21	2.4	19	74	22	51	31	0	10	57	1.33
4718352--4718377	2	13.0	2	100	0	52	50	0	0	50	1.00
4722038--4722068	2	15.5	2	100	0	62	51	0	0	48	1.00
4724962--4725038	26	3.0	25	75	11	75	68	3	3	23	1.23
4724978--4725023	18	2.6	18	82	3	58	73	2	0	23	0.94
4729765--4729815	6	8.0	6	79	12	57	0	19	0	80	0.71
4729765--4729815	9	5.7	9	83	6	50	0	19	0	80	0.71
4732300--4732338	8	4.9	8	81	12	53	64	10	12	12	1.51
4732300--4732338	17	2.4	16	87	8	53	64	10	12	12	1.51
4733431--4733644	22	9.3	23	75	7	123	37	11	20	30	1.87
4733445--4733608	45	3.6	45	79	9	147	39	10	20	29	1.87
4733445--4733760	45	7.0	44	72	14	137	37	10	18	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4733483--4733769	23	12.6	23	71	18	140	38	9	18	34	1.82
4733479--4733666	68	2.8	65	76	15	179	37	10	19	32	1.85
4733960--4734247	115	2.5	113	82	4	337	35	13	14	36	1.85
4735633--4735692	17	3.7	18	77	14	60	6	15	0	78	0.95
4735638--4735689	27	1.9	27	81	14	63	7	15	0	76	0.99
4741355--4741391	17	2.2	16	90	4	56	75	2	16	5	1.10
4742520--4742568	25	1.9	26	84	12	66	28	12	12	46	1.77
4743257--4743438	33	5.5	33	73	7	136	22	16	12	48	1.80
4743351--4743464	33	3.5	33	79	4	113	24	14	9	51	1.71
4743711--4743756	21	2.2	21	88	7	67	32	2	13	52	1.52
4745307--4745342	4	8.8	4	90	3	54	75	0	0	25	0.81
4745312--4745347	12	3.0	12	87	0	54	72	0	0	27	0.85
4745389--4745445	29	2.0	30	86	6	82	36	14	3	45	1.61
4750266--4750309	19	2.3	19	84	7	54	38	15	4	40	1.68
4750423--4750555	43	3.1	41	84	8	178	60	12	5	21	1.51
4751168--4751206	19	2.0	20	85	5	53	20	2	20	56	1.54
4752343--4752386	23	1.9	23	86	9	63	43	2	2	52	1.26
4753240--4753283	20	2.2	20	84	8	54	77	0	0	22	0.77
4754092--4754248	77	2.0	77	87	0	224	39	16	17	26	1.91
4755975--4756015	20	2.0	20	95	0	73	36	9	2	51	1.48
4758276--4758355	24	3.3	24	78	13	74	15	8	0	76	1.02
4758589--4758635	9	5.2	9	79	5	51	12	17	0	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4758589--4758631	18	2.3	19	88	4	61	11	18	0	69	1.17
4758624--4758657	11	3.0	11	86	4	50	14	5	0	79	0.91
4758646--4758695	18	2.9	17	82	5	57	30	2	0	68	1.01
4758656--4758695	17	2.4	17	83	8	55	32	2	0	65	1.06
4759192--4759216	11	2.3	11	100	0	50	52	0	0	48	1.00
4764265--4764298	15	2.3	15	90	5	52	23	23	8	44	1.81
4766696--4766724	14	2.1	14	100	0	58	34	0	20	44	1.52
4781038--4781075	18	2.2	18	90	9	62	31	0	0	68	0.90
4782220--4782253	18	1.9	18	88	5	52	20	5	29	44	1.75
4782496--4782567	14	4.7	15	73	11	56	25	0	2	72	0.98
4782526--4782567	22	1.9	22	85	0	57	30	0	4	64	1.14
4792976--4793036	32	2.0	30	81	12	70	34	19	22	22	1.97
4794517--4794555	2	19.5	2	100	0	78	48	0	0	51	1.00
4797673--4797702	14	2.1	14	93	0	51	53	0	0	46	1.00
4797683--4797747	23	2.5	28	72	25	79	46	3	0	50	1.17
4797691--4797744	23	2.3	23	93	0	90	44	3	0	51	1.19
4797787--4797879	32	3.0	32	81	10	120	55	5	0	38	1.23
4797787--4797879	31	3.0	31	83	10	118	55	5	0	38	1.23
4798223--4798309	42	2.1	41	85	8	113	66	4	1	27	1.18
4798357--4798406	21	2.3	22	79	3	66	50	4	4	42	1.40
4798690--4798733	18	2.6	17	86	10	56	36	0	4	59	1.18
4798749--4798784	19	1.9	19	88	5	56	38	2	2	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4799779--4800133	131	2.7	131	92	0	586	26	3	12	57	1.51
4800312--4800419	53	2.0	53	92	0	180	45	10	12	31	1.76
4801170--4801234	24	2.8	23	77	9	69	36	1	3	58	1.23
4807414--4807465	27	2.0	26	88	3	77	73	5	0	21	1.04
4807414--4807470	26	2.2	25	84	9	71	73	5	0	21	1.02
4807457--4807500	18	2.5	18	85	10	56	75	0	9	15	1.05
4808347--4808465	3	41.7	3	70	21	69	58	5	1	34	1.30
4808351--4808464	5	22.2	5	73	13	81	57	5	1	35	1.31
4808348--4808464	8	14.1	8	70	15	78	58	5	1	35	1.31
4808362--4808465	39	2.5	41	77	13	97	57	5	1	34	1.33
4808348--4808464	14	8.7	13	71	20	66	58	5	1	35	1.31
4809795--4809861	6	10.8	6	75	15	57	44	2	0	52	1.16
4813728--4813752	13	1.9	13	100	0	50	56	0	0	44	0.99
4814411--4814447	14	2.7	14	91	4	58	62	2	5	29	1.31
4818215--4818240	7	3.7	7	100	0	52	11	0	0	88	0.52
4818708--4818742	6	6.0	6	90	6	54	17	0	11	71	1.14
4818708--4818742	17	2.0	18	88	5	54	17	0	11	71	1.14
4818988--4819026	20	1.9	21	89	5	62	20	2	17	58	1.50
4819492--4819534	15	2.8	16	82	10	54	25	0	9	65	1.22
4819583--4819637	25	2.2	26	87	9	78	50	3	5	40	1.43
4823093--4823158	34	2.0	34	81	3	80	42	7	7	42	1.61
4823175--4823257	33	2.5	33	79	13	89	38	12	12	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4825036--4825073	15	2.5	15	83	12	51	71	0	0	28	0.87
4825835--4825889	7	8.1	7	78	11	53	72	1	1	23	1.04
4830389--4830435	20	2.3	20	85	0	67	10	4	27	57	1.51
4830989--4831027	14	2.7	14	88	4	60	7	5	7	79	1.05
4830986--4831057	17	4.4	17	70	21	55	6	8	4	80	1.01
4831002--4831044	20	2.2	20	83	8	52	9	6	4	79	1.06
4830975--4831057	33	2.5	33	79	14	91	6	8	3	81	0.95
4831080--4831132	24	2.2	24	80	6	63	24	3	13	58	1.51
4831215--4831256	17	2.6	16	80	3	57	26	4	9	59	1.48
4832115--4832161	22	2.1	22	96	0	85	44	14	14	25	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93