genome.fa.s190.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  32  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3486829--3486922	45	2.1	45	82	4	109	20	26	35	18	1.95
3487007--3487308	45	6.7	45	79	4	286	22	29	29	18	1.97
3487007--3487533	90	5.9	90	74	6	246	22	28	28	20	1.98
3487031--3487338	135	2.3	135	81	3	343	22	30	29	17	1.97
3487096--3487421	135	2.4	135	81	2	359	21	30	29	19	1.97
3487458--3487686	126	1.8	126	84	0	314	21	26	30	21	1.99
3496348--3496451	45	2.3	45	91	0	172	15	26	37	20	1.92
3496551--3496579	10	3.0	10	95	5	51	10	6	41	41	1.66
3496566--3496713	45	3.3	44	78	2	118	21	27	29	22	1.99
3497371--3498973	45	35.7	45	72	3	709	21	28	30	20	1.98
3498011--3498343	179	1.9	180	80	1	391	19	29	32	18	1.96
3497433--3498401	314	3.1	313	79	2	987	21	29	30	19	1.98
3509684--3509736	26	2.0	26	92	7	90	26	22	20	30	1.98
3512351--3512438	35	2.5	35	86	0	122	22	21	7	47	1.76
3512385--3512520	70	1.9	70	86	0	191	21	13	11	53	1.71
3512375--3512520	35	4.2	35	82	3	150	21	13	10	53	1.71
3516008--3516102	45	2.1	45	86	3	129	21	28	33	16	1.95
3516187--3516972	45	17.5	45	70	6	230	20	28	30	20	1.98
3525650--3525750	45	2.2	45	89	0	148	17	27	34	19	1.95
3525676--3525769	45	2.1	45	81	0	107	23	30	29	15	1.96
3525852--3525877	10	2.6	10	100	0	52	11	11	38	38	1.78
3525808--3525915	55	2.0	55	84	0	144	17	26	31	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3525863--3526030	45	3.7	45	83	0	183	20	31	29	18	1.96
3526958--3527484	269	2.0	270	79	1	574	22	27	29	20	1.98
3526608--3528329	90	19.2	90	70	4	576	21	27	29	20	1.98
3527444--3527611	84	2.0	84	83	4	214	19	27	33	19	1.96
3526613--3528329	45	38.3	45	70	5	353	21	27	29	20	1.98
3526613--3528332	135	12.8	135	70	6	588	21	27	29	20	1.98
3529178--3529427	136	1.8	136	80	0	302	20	28	26	24	1.99
3538857--3538907	26	2.0	26	96	0	93	29	25	13	31	1.94
3539048--3539100	26	2.0	26	92	7	90	26	22	20	30	1.98
3541696--3547232	35	156.3	35	68	13	985	20	15	11	52	1.73
3542367--3542515	71	2.1	70	81	7	185	20	15	9	54	1.69
3542386--3542654	71	3.8	70	73	8	163	19	14	11	54	1.69
3542447--3542638	106	1.8	107	79	5	228	18	14	10	55	1.68
3542628--3542717	47	1.9	47	88	0	135	21	12	8	57	1.61
3542558--3542772	117	1.8	118	82	6	276	20	10	9	59	1.58
3542718--3542777	18	3.3	18	71	17	52	23	5	11	60	1.51
3543267--3543439	71	2.5	68	79	6	186	19	13	13	52	1.74
3543548--3543613	31	2.1	33	94	5	118	18	7	12	62	1.52
3543891--3544071	81	2.2	81	99	0	353	24	12	8	54	1.65
3544001--3544219	71	3.1	69	78	12	205	21	15	10	52	1.73
3544214--3544507	106	2.8	107	76	8	280	18	16	13	51	1.76
3544580--3544754	71	2.5	70	81	7	194	21	13	9	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3544580--3544818	71	3.4	69	76	7	187	21	12	9	56	1.65
3545217--3545364	71	2.1	72	85	10	196	22	11	11	54	1.68
3545264--3545523	71	3.7	71	74	9	208	20	16	10	52	1.72
3545267--3547386	106	20.1	104	69	12	442	19	16	11	52	1.74
3545923--3545976	27	2.0	27	88	0	81	14	12	7	64	1.47
3546328--3546674	71	5.0	68	76	11	310	21	18	9	49	1.76
3546326--3546637	104	2.9	107	78	8	282	22	18	8	50	1.73
3546587--3546698	36	3.1	36	93	3	183	16	22	16	43	1.87
3547120--3547282	71	2.3	71	79	11	167	20	19	10	49	1.77
3546955--3547386	35	12.3	35	68	13	104	19	18	11	50	1.76
3547549--3547976	35	12.2	35	72	11	173	17	15	13	53	1.73
3547584--3547764	70	2.6	69	79	5	202	17	12	15	54	1.70
3547739--3548195	35	13.1	33	68	15	113	20	15	12	52	1.74
3547616--3548043	35	12.2	35	73	8	176	17	14	13	54	1.71
3548265--3548415	35	4.4	34	76	15	123	19	17	10	52	1.73
3548330--3548427	33	2.8	36	79	11	114	17	18	11	53	1.73
3548260--3548451	35	5.5	34	75	9	111	19	18	11	51	1.76
3548616--3548809	35	5.4	35	69	13	119	21	18	8	52	1.72
3548771--3548845	37	2.0	37	89	0	114	22	20	9	48	1.78
3549018--3549507	35	14.0	35	72	10	132	19	16	11	52	1.73
3548946--3549372	105	4.1	105	75	12	307	19	14	11	53	1.72
3549107--3549556	70	6.4	70	73	10	278	19	15	11	53	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3549107--3549556	35	12.9	34	74	9	246	19	15	11	53	1.72
3550689--3551765	35	30.5	35	69	13	280	20	15	11	52	1.73
3551046--3551180	71	1.9	70	86	7	193	19	16	8	55	1.67
3551043--3589954	35	1092.8	36	67	16	3395	19	16	11	52	1.74
3551305--3551394	47	1.9	47	88	0	135	21	12	8	57	1.61
3551395--3551454	18	3.3	18	71	17	52	23	5	11	60	1.51
3551471--3551766	69	4.2	68	71	13	192	19	16	12	51	1.76
3551530--3551782	139	1.8	138	84	3	346	18	16	12	52	1.75
3552224--3552289	31	2.1	33	91	5	109	19	7	10	62	1.51
3553238--3553484	71	3.5	70	80	4	237	20	13	10	55	1.67
3554005--3554173	71	2.4	72	83	5	202	19	17	10	52	1.74
3554400--3554454	18	3.1	18	70	17	51	20	9	12	58	1.61
3553895--3558834	141	35.0	141	69	12	480	20	15	11	52	1.74
3554590--3554643	27	2.0	27	88	0	81	14	12	7	64	1.47
3554631--3554767	72	1.9	70	80	5	159	18	13	12	55	1.69
3554994--3555324	71	4.7	68	76	11	303	21	18	9	51	1.74
3556368--3557053	71	9.7	70	73	10	266	19	15	11	53	1.72
3556333--3557016	106	6.5	104	73	10	349	19	14	11	53	1.71
3557175--3557332	82	1.9	82	85	0	217	24	16	5	53	1.63
3558200--3558430	104	2.2	105	76	11	242	18	16	12	52	1.74
3559039--3559302	139	1.9	140	82	3	336	21	12	12	53	1.72
3558994--3559453	104	4.4	100	74	10	295	20	14	12	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3560271--3560543	141	1.9	140	80	5	318	20	13	12	53	1.72
3560781--3561011	117	2.0	117	80	5	261	18	15	12	52	1.74
3562238--3562297	31	1.9	31	82	0	75	15	18	16	50	1.79
3562187--3562372	101	1.8	101	82	2	239	17	15	15	52	1.75
3554947--3590748	70	503.9	70	69	11	5506	19	16	12	52	1.75
3562416--3562784	141	2.6	141	79	8	383	18	14	13	53	1.73
3562615--3563013	139	2.8	139	77	7	362	18	16	11	53	1.71
3563475--3563686	69	3.1	65	75	15	203	19	16	10	52	1.73
3563844--3563901	17	3.4	16	73	21	55	18	12	10	58	1.61
3564289--3564488	71	2.8	69	76	7	188	16	19	15	49	1.80
3564991--3565315	142	2.3	141	79	6	336	18	14	13	53	1.72
3565594--3566067	106	4.5	103	76	7	287	19	16	12	52	1.74
3566120--3566481	103	3.5	102	78	10	290	18	14	12	53	1.72
3566081--3566375	103	2.8	104	77	10	291	18	14	13	52	1.74
3566290--3566375	32	2.6	32	80	9	93	17	16	12	53	1.73
3566394--3566528	71	1.9	71	80	8	159	19	15	11	54	1.71
3566755--3567029	104	2.6	104	76	6	268	23	15	10	50	1.75
3567127--3567183	30	1.9	30	89	3	89	17	17	14	50	1.77
3567262--3567502	103	2.3	102	78	6	243	17	12	14	55	1.69
3567896--3568032	67	2.0	67	87	2	195	21	14	11	51	1.74
3568464--3568719	141	1.8	140	82	4	318	19	14	12	53	1.73
3569007--3569166	82	2.0	82	82	2	196	20	13	9	56	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3569619--3569681	19	3.5	19	69	18	62	25	9	7	57	1.58
3569371--3569874	141	3.6	141	73	10	343	20	15	10	52	1.73
3570775--3571040	141	1.9	141	82	3	338	21	15	10	52	1.72
3571289--3571445	82	1.9	82	84	2	208	20	11	9	58	1.60
3571652--3571811	82	2.0	82	82	2	196	20	13	9	56	1.64
3571684--3571779	47	2.2	45	81	10	110	21	13	7	57	1.61
3571730--3572512	141	5.6	140	75	7	480	19	16	12	51	1.75
3572425--3572679	141	1.8	141	80	10	315	20	17	8	53	1.69
3573618--3573774	82	1.9	82	86	2	226	20	10	8	59	1.57
3573802--3574454	247	2.7	247	80	4	642	18	15	12	52	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93