genome.fa.s190.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  78  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11645219--11645265	18	2.5	19	80	13	53	44	4	2	48	1.34
11658606--11658659	22	2.5	22	81	6	65	40	12	16	29	1.86
11660269--11660326	26	2.3	26	93	3	100	25	8	32	32	1.86
11665442--11666232	393	2.0	394	95	0	1431	35	13	16	35	1.87
11668918--11668960	20	2.2	20	91	0	68	39	4	4	51	1.44
11669086--11669110	2	12.5	2	100	0	50	52	0	0	48	1.00
11674524--11674595	36	2.0	36	97	0	135	41	12	16	29	1.85
11680337--11680404	29	2.3	30	77	7	77	45	0	4	50	1.22
11680384--11680428	11	4.0	11	83	13	56	31	0	2	66	1.04
11680539--11680839	159	1.9	159	92	0	512	39	10	9	40	1.73
11681289--11681366	34	2.4	34	80	6	90	52	1	0	46	1.08
11682438--11682481	17	2.6	16	82	13	52	52	2	4	40	1.34
11682445--11682485	17	2.3	18	83	12	57	56	0	4	39	1.21
11682455--11682593	30	4.7	29	79	10	120	53	1	5	39	1.34
11682455--11682570	60	1.9	59	86	5	162	51	1	6	40	1.37
11682541--11682625	29	2.9	29	77	8	75	62	1	2	34	1.16
11683168--11683209	2	21.5	2	85	4	50	52	0	0	47	1.00
11686019--11686609	160	3.7	157	80	6	553	43	15	9	32	1.78
11690057--11690103	21	2.2	21	96	0	85	42	19	10	27	1.84
11690057--11690120	21	3.0	21	90	0	83	39	20	12	28	1.89
11692523--11693257	63	11.7	62	68	12	299	39	12	10	38	1.76
11692599--11692881	62	4.5	64	71	12	201	40	13	8	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11692648--11693523	125	7.0	122	73	13	462	38	12	10	38	1.77
11692523--11692954	189	2.3	188	78	8	434	39	12	10	37	1.77
11692765--11693040	123	2.2	125	80	8	303	38	13	11	35	1.82
11692672--11693291	249	2.5	248	79	9	641	38	12	10	38	1.78
11704191--11704282	48	1.9	48	82	8	116	43	9	20	26	1.83
11710014--11710063	24	2.0	24	84	7	64	44	0	12	44	1.41
11710758--11710841	36	2.3	36	87	4	116	38	0	0	61	0.96
11710781--11710843	19	3.4	19	78	8	85	34	0	0	65	0.93
11710796--11710850	12	4.6	12	73	8	58	36	0	0	63	0.95
11710796--11710853	11	4.9	11	75	21	55	36	0	0	63	0.94
11710771--11710853	36	2.3	36	95	2	148	37	0	0	62	0.95
11713213--11713264	15	3.4	15	75	21	54	63	3	0	32	1.12
11714692--11714789	6	15.8	6	83	6	88	18	65	2	14	1.37
11714827--11714864	18	2.1	19	85	5	51	5	52	15	26	1.64
11722004--11722036	13	2.6	13	90	4	50	42	0	0	57	0.98
11731318--11731374	26	2.2	26	84	6	71	36	7	0	56	1.27
11731752--11731785	14	2.4	14	85	0	50	38	8	0	52	1.33
11732073--11732150	34	2.3	34	84	4	95	41	10	7	41	1.68
11732904--11732933	14	2.1	15	93	6	53	36	6	6	50	1.55
11733111--11733164	27	2.0	27	100	0	108	44	0	40	14	1.46
11733706--11733755	25	2.0	26	88	4	75	50	6	0	44	1.26
11733845--11733898	17	3.4	16	77	22	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11733854--11733899	18	2.8	17	84	15	53	52	0	0	47	1.00
11733877--11733923	17	2.9	16	81	9	51	53	2	0	44	1.12
11733894--11733928	17	2.1	17	89	10	54	48	2	0	48	1.16
11740724--11740754	14	2.1	15	94	5	55	38	0	0	61	0.96
11743195--11743228	17	1.9	18	88	5	52	61	0	2	35	1.11
11743285--11743319	16	2.1	17	89	5	54	31	2	0	65	1.07
11743282--11743322	17	2.4	18	84	12	59	34	2	0	63	1.08
11746841--11746882	8	5.2	8	82	0	57	59	0	0	40	0.97
11746844--11746896	26	2.0	26	85	0	70	60	1	0	37	1.08
11746821--11746882	16	4.1	16	75	8	58	56	0	0	43	0.99
11749774--11749928	48	3.2	47	75	4	148	45	5	3	44	1.46
11752479--11752514	18	1.9	19	88	5	56	41	5	8	44	1.58
11760834--11760864	7	4.6	7	96	4	55	90	0	9	0	0.46
11768788--11768813	2	13.0	2	100	0	52	50	0	0	50	1.00
11768971--11769024	27	2.0	27	96	0	99	33	3	24	38	1.73
11773551--11773599	16	3.2	16	77	5	57	46	0	0	53	1.00
11773572--11773604	11	3.3	10	91	8	50	57	0	0	42	0.98
11774434--11774491	24	2.4	24	77	11	64	50	5	0	44	1.24
11776095--11776144	21	2.4	21	89	0	73	36	8	2	54	1.42
11779712--11779765	24	2.2	24	81	15	67	18	0	5	75	0.98
11779965--11780014	17	3.0	17	76	5	57	16	12	0	72	1.13
11779965--11780032	33	2.1	33	85	0	91	22	11	0	66	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11784057--11784123	16	3.9	15	75	19	53	5	10	1	82	0.91
11784055--11784103	19	2.5	19	83	3	62	4	10	2	83	0.85
11784588--11784654	29	2.3	26	77	22	64	43	0	1	55	1.09
11784701--11784755	29	1.9	28	82	10	67	14	1	9	74	1.14
11786059--11786084	2	13.0	2	100	0	52	50	0	0	50	1.00
11787965--11788004	9	4.3	9	82	17	55	42	0	2	55	1.13
11789332--11789359	3	9.3	3	100	0	56	32	0	0	67	0.91
11789403--11789461	29	2.0	29	86	0	82	37	5	1	55	1.32
11790084--11790109	12	2.2	12	100	0	52	38	0	19	42	1.51
11792533--11792585	22	2.4	22	84	9	63	39	0	1	58	1.09
11796172--11796214	21	1.9	24	86	13	65	32	0	0	67	0.91
11799634--11799671	19	2.0	19	85	10	51	31	23	7	36	1.84
11805153--11805253	5	18.8	5	74	11	60	37	4	2	54	1.37
11805143--11805257	3	41.7	3	69	20	56	35	4	2	57	1.32
11806064--11806122	15	3.9	15	73	20	59	16	3	5	74	1.13
11806061--11806131	13	4.7	14	73	20	63	15	2	4	77	1.04
11806098--11806152	25	2.2	25	83	6	67	21	0	5	72	1.04
11806119--11806157	19	2.1	19	85	0	51	30	0	5	64	1.15
11806390--11806439	20	2.5	19	81	15	57	62	10	0	28	1.27
11807359--11807392	11	3.1	11	88	12	52	17	0	8	73	1.08
11810170--11810199	11	2.7	11	94	0	51	80	0	10	10	0.92
11810229--11810262	14	2.7	12	90	9	50	88	2	8	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11810229--11810262	15	2.3	15	89	0	50	88	2	8	0	0.62
11810534--11810609	14	5.3	14	69	10	55	78	7	9	3	1.06
11811650--11811907	119	2.2	119	80	2	304	21	24	13	41	1.88
11812307--11812402	5	17.6	5	73	12	57	39	4	4	52	1.40
11813560--11813603	21	2.1	20	84	16	54	59	9	0	31	1.29
11831657--11831682	1	26.0	1	100	0	52	100	0	0	0	0.00
11836688--11836717	11	2.8	11	95	5	53	16	20	10	53	1.71
11836745--11836783	14	2.8	14	96	0	69	35	7	7	48	1.61
11837482--11837533	10	5.0	11	77	11	56	19	1	0	78	0.84
11837481--11837533	21	2.6	21	78	3	63	18	1	0	79	0.83
11837485--11837532	18	2.7	18	86	0	69	16	2	0	81	0.79
11839143--11839437	58	5.0	59	76	12	236	48	6	10	33	1.65
11839143--11839396	63	4.2	60	78	8	241	49	5	11	33	1.62
11839148--11839396	58	4.2	60	79	7	247	50	5	11	32	1.61
11840456--11840489	16	2.1	16	88	0	50	32	17	5	44	1.73
11849675--11849703	3	9.7	3	100	0	58	34	0	0	65	0.93
11850630--11850667	2	19.5	2	89	5	60	44	0	2	52	1.14
11857335--11857407	2	36.5	2	88	0	65	50	12	0	36	1.40
11857351--11857407	22	2.6	22	97	0	105	50	15	0	33	1.44
11857510--11857562	26	2.0	26	100	0	106	35	15	3	45	1.64
11859658--11859712	28	2.0	27	89	10	85	65	5	0	29	1.15
11861264--11861296	17	1.9	17	88	11	50	54	12	15	18	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11861784--11861809	2	13.0	2	100	0	52	50	0	0	50	1.00
11862806--11862852	16	2.6	17	81	18	60	17	10	2	70	1.26
11864701--11864778	28	3.2	24	83	12	70	61	0	0	38	0.96
11864724--11864778	28	2.0	28	100	0	110	61	0	0	38	0.96
11865263--11865300	18	2.3	18	86	13	55	50	0	2	47	1.15
11865312--11865397	41	2.1	41	84	4	111	52	4	2	40	1.35
11865353--11865382	13	2.2	14	94	5	53	60	0	0	40	0.97
11873715--11873759	21	2.1	21	84	8	56	46	2	6	44	1.42
11889119--11889166	21	2.2	22	77	3	53	47	4	4	43	1.41
11895146--11895185	20	2.0	20	85	9	55	75	0	7	17	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93