genome.fa.s190.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  26  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3203240--3203371	71	1.9	70	80	1	156	50	13	18	17	1.77
3203468--3203546	34	2.3	35	89	6	117	54	12	16	16	1.71
3202553--3203656	35	31.4	35	72	8	282	51	12	16	18	1.76
3203657--3203769	35	3.2	35	76	0	100	53	9	15	21	1.69
3203681--3204439	35	21.2	35	70	10	180	50	11	17	20	1.76
3203845--3204077	119	2.0	120	79	5	258	50	9	18	21	1.75
3204089--3204413	70	4.6	70	76	9	234	52	10	15	21	1.72
3204094--3204402	105	2.9	102	83	4	314	51	11	16	21	1.74
3204085--3204413	35	9.3	35	76	3	212	52	10	15	21	1.73
3204264--3204475	106	2.0	107	82	6	261	51	13	16	18	1.75
3204547--3204655	35	3.1	35	76	6	114	47	10	17	24	1.78
3204650--3204727	35	2.2	35	86	0	102	47	12	20	19	1.82
3204669--3204749	35	2.3	35	86	0	108	51	12	17	18	1.75
3204720--3204876	82	2.0	81	86	6	221	54	7	13	24	1.65
3204785--3204875	47	1.9	47	84	4	121	52	7	15	24	1.68
3204927--3205012	35	2.5	35	84	0	109	50	15	20	13	1.78
3205032--3205159	35	3.6	35	81	3	150	54	9	15	20	1.68
3205022--3205159	70	2.0	71	85	4	190	54	8	15	21	1.68
3205186--3205263	35	2.2	35	88	0	111	47	12	20	19	1.82
3205240--3206118	35	24.6	35	67	10	215	52	11	15	20	1.74
3205308--3205466	82	2.0	81	82	1	192	55	8	13	21	1.65
3205800--3206024	71	3.2	70	73	6	195	52	11	15	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3205846--3205939	36	2.7	35	86	3	134	52	11	17	19	1.74
3205871--3206115	105	2.3	105	79	4	253	50	13	17	19	1.78
3206079--3206177	36	2.8	36	74	7	94	49	11	21	18	1.78
3206226--3206309	35	2.4	35	80	7	82	55	10	15	17	1.67
3206256--3206519	35	7.5	35	75	5	194	54	10	15	19	1.70
3206226--3206413	104	1.8	105	83	5	256	53	10	18	18	1.71
3206591--3206918	35	9.4	34	70	11	137	49	13	18	18	1.79
3206755--3207024	35	7.7	35	74	5	163	52	14	16	17	1.75
3207116--3213345	35	176.8	35	68	12	935	51	12	17	18	1.76
3207337--3207424	36	2.5	36	83	1	115	56	11	13	18	1.66
3208165--3208335	71	2.4	71	79	4	168	52	12	17	18	1.75
3208850--3209100	104	2.4	104	81	4	272	51	11	17	19	1.75
3207697--3209214	141	10.8	140	72	7	362	51	11	17	19	1.76
3209249--3221090	35	332.4	35	66	14	1033	51	12	17	18	1.76
3209249--3209682	176	2.5	176	80	4	437	51	10	19	18	1.75
3209619--3209704	33	2.5	34	81	9	104	51	10	16	22	1.74
3210566--3210805	104	2.3	106	81	5	274	55	10	17	16	1.69
3210464--3215317	141	34.4	139	69	11	1044	51	12	17	18	1.77
3210779--3211227	106	4.3	105	76	7	307	53	12	15	18	1.73
3211537--3211629	47	2.0	47	86	0	132	55	7	13	22	1.63
3212951--3213346	71	5.7	69	78	6	325	52	13	16	17	1.75
3212947--3213337	69	5.6	67	77	9	243	51	14	16	17	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3214377--3214489	55	2.1	55	87	0	163	50	11	18	19	1.77
3214357--3214525	90	1.9	90	85	2	232	47	12	19	20	1.82
3214308--3214548	125	1.9	124	82	5	299	48	10	19	20	1.78
3214728--3215002	71	3.9	70	75	11	222	52	12	17	17	1.74
3215022--3215283	139	1.9	140	80	5	316	51	11	15	20	1.74
3217134--3217431	139	2.1	140	81	6	363	54	11	16	18	1.71
3217788--3217879	37	2.6	35	79	6	96	50	14	18	17	1.79
3217973--3218155	71	2.6	71	74	7	183	50	12	16	20	1.77
3218025--3218320	152	1.9	154	80	5	341	51	13	15	19	1.76
3219403--3219446	16	2.5	17	82	14	54	59	11	11	18	1.61
3219403--3219457	18	3.1	18	77	15	60	60	9	12	18	1.58
3219798--3219910	34	3.3	35	80	3	124	56	12	12	18	1.66
3220707--3221054	104	3.3	103	80	8	276	50	11	18	19	1.77
3220896--3221233	35	9.7	34	69	11	132	51	10	17	20	1.75
3222452--3222563	42	2.7	42	94	1	190	33	25	11	30	1.91
3222707--3222752	18	2.6	18	92	0	83	34	26	4	34	1.76
3223198--3223314	37	3.2	36	84	3	146	28	15	21	35	1.94
3223867--3224273	144	2.8	143	78	4	424	32	14	12	39	1.84
3228125--3228271	35	4.3	35	77	10	119	31	14	19	34	1.93
3228297--3228581	133	2.1	136	79	8	298	30	16	18	33	1.94
3228358--3228618	137	1.9	132	83	5	326	31	17	18	33	1.94
3228492--3228814	168	1.9	167	84	3	434	31	15	18	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3228978--3229059	22	3.8	21	80	4	92	32	18	17	31	1.94
3229657--3229893	35	6.7	35	75	9	189	53	12	13	20	1.71
3229657--3229893	70	3.4	69	79	7	246	53	12	13	20	1.71
3229656--3229893	105	2.3	105	79	7	259	53	12	13	20	1.72
3230000--3241081	35	312.2	35	68	12	1504	51	11	17	19	1.75
3230000--3268702	70	544.5	71	67	14	3431	51	11	16	19	1.75
3230106--3230242	71	1.9	70	86	4	195	55	10	13	21	1.67
3230000--3230242	106	2.3	105	82	4	276	52	9	16	20	1.72
3230001--3230499	258	1.9	257	80	3	572	51	10	17	21	1.73
3230416--3230675	141	1.8	141	80	6	312	52	10	18	18	1.74
3230633--3230816	71	2.6	71	80	1	210	53	13	14	17	1.72
3230662--3230852	106	1.8	105	80	3	231	55	13	12	18	1.69
3230964--3231129	71	2.3	71	79	10	178	53	11	19	16	1.73
3231267--3231368	36	2.9	35	79	2	87	53	8	11	25	1.66
3231472--3231731	141	1.9	139	80	1	304	50	11	18	19	1.77
3231704--3231751	21	2.3	21	88	0	69	58	6	16	18	1.59
3232423--3232482	20	3.2	20	61	29	51	58	11	10	20	1.61
3232414--3232572	82	1.9	82	82	2	194	55	7	13	23	1.63
3232725--3232955	106	2.2	105	76	6	234	52	10	18	18	1.73
3233691--3235458	106	16.8	105	70	11	420	51	11	17	19	1.75
3235727--3236871	71	16.2	70	72	9	355	52	12	16	18	1.74
3236081--3236702	106	5.9	105	72	10	290	52	12	16	19	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3235727--3237062	141	9.5	138	73	7	501	51	12	17	18	1.76
3236802--3237058	139	1.8	139	80	5	313	48	12	18	20	1.80
3237297--3237567	106	2.6	105	82	1	317	50	11	17	20	1.76
3237259--3237518	141	1.9	140	79	5	301	51	11	16	19	1.75
3238039--3238227	71	2.7	69	80	7	202	53	14	13	17	1.73
3239415--3239615	71	2.8	70	79	5	181	52	13	18	15	1.75
3240108--3240399	71	4.1	70	74	15	235	53	12	15	18	1.73
3241196--3241396	35	5.7	35	77	5	165	50	13	16	19	1.78
3241169--3241359	105	1.8	106	83	1	258	48	13	18	19	1.81
3241212--3241408	71	2.8	70	79	7	179	50	13	16	19	1.78
3241211--3241437	35	6.4	34	73	13	124	50	14	16	18	1.79
3241430--3241768	141	2.4	140	78	5	346	51	10	15	22	1.73
3241442--3242159	35	20.4	35	70	12	194	52	10	16	21	1.73
3241462--3242156	105	6.6	106	73	8	287	52	10	15	21	1.73
3242113--3242205	46	2.0	46	85	4	125	53	5	17	23	1.64
3242228--3242938	35	20.2	35	72	9	108	52	13	16	17	1.74
3242740--3242797	19	3.2	19	71	14	50	56	12	8	22	1.62
3242631--3242929	105	2.8	105	80	5	316	53	13	14	19	1.73
3242804--3242864	20	3.4	19	75	25	69	45	13	21	19	1.84
3242596--3242859	142	1.9	140	80	7	311	52	13	14	19	1.74
3242966--3243077	35	3.2	35	78	5	118	52	8	13	25	1.67
3243020--3243099	35	2.3	35	84	2	97	57	10	11	21	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3243183--3246215	35	85.9	35	70	10	793	51	12	16	19	1.75
3244322--3251657	141	51.9	139	68	11	656	51	11	16	19	1.75
3244369--3246212	106	17.5	104	71	9	420	52	12	16	19	1.74
3246135--3246295	82	2.0	82	83	2	207	55	9	13	21	1.66
3246250--3246788	35	15.4	35	72	8	119	53	11	16	18	1.73
3246250--3246519	106	2.6	105	76	5	258	52	10	17	20	1.72
3246776--3246853	35	2.5	29	74	21	84	51	5	20	23	1.67
3246788--3246868	35	2.3	35	86	0	108	46	7	20	24	1.76
3247061--3247294	35	6.8	35	72	6	145	53	13	17	16	1.73
3247146--3247765	35	17.7	34	71	11	246	50	10	17	20	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93