genome.fa.s190.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  90  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14777780--14777854	19	3.8	19	76	11	71	32	2	4	61	1.28
14777780--14777856	20	3.9	20	74	16	70	32	2	3	61	1.28
14780741--14780781	16	2.4	17	88	8	57	51	0	4	43	1.23
14780733--14780781	18	2.8	18	78	15	57	53	0	4	42	1.20
14782223--14782263	2	20.5	2	100	0	82	51	0	48	0	1.00
14788317--14788370	23	2.3	23	84	9	74	5	12	3	77	1.07
14791852--14791921	30	2.6	26	84	13	88	35	8	14	41	1.76
14791866--14791928	30	2.1	30	96	0	117	36	9	14	39	1.78
14802320--14802360	21	2.0	21	95	0	73	29	14	29	26	1.95
14802960--14803106	52	2.8	51	82	6	170	27	23	6	41	1.80
14803143--14803182	11	3.6	11	82	0	53	52	22	0	25	1.47
14804507--14804562	25	2.3	24	78	9	60	41	1	0	57	1.09
14805092--14805195	30	3.4	30	75	1	109	39	3	2	53	1.34
14805248--14805303	29	1.9	29	85	7	78	58	0	3	37	1.15
14814662--14814694	17	1.9	17	93	0	57	42	12	0	45	1.41
14814703--14814782	29	2.7	29	86	1	106	57	0	2	40	1.12
14816729--14816811	41	2.0	41	83	0	103	49	18	4	27	1.67
14818108--14818144	8	4.6	8	86	0	56	43	0	0	56	0.99
14818108--14818162	16	3.6	16	80	11	62	47	0	0	52	1.00
14819753--14819794	22	1.9	22	85	9	59	54	9	7	28	1.59
14830939--14830970	15	2.1	16	94	5	57	71	0	28	0	0.86
14831422--14831454	11	2.8	12	90	4	50	72	0	9	18	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14845537--14845570	17	1.9	18	94	5	61	8	2	0	88	0.62
14846386--14846428	23	1.9	23	85	4	61	46	0	2	51	1.13
14846431--14846500	24	2.8	23	72	10	59	42	0	1	55	1.08
14846456--14846517	28	2.2	29	82	8	74	43	0	1	54	1.09
14851339--14851389	26	2.0	25	84	3	66	9	19	3	66	1.36
14857005--14857056	27	1.9	27	88	0	77	13	21	21	44	1.86
14858213--14858255	8	5.4	8	88	0	59	62	11	23	2	1.40
14860867--14860911	21	2.1	21	84	8	56	66	8	0	24	1.20
14862540--14862602	12	5.3	12	78	12	51	46	23	7	22	1.78
14862589--14862657	28	2.5	28	95	0	120	44	27	4	23	1.72
14863334--14863869	189	2.8	189	81	5	580	41	9	13	35	1.77
14863371--14863967	189	3.1	185	78	7	538	41	9	12	36	1.76
14866874--14866911	18	2.1	18	100	0	76	26	10	31	31	1.90
14869733--14870127	161	2.5	162	79	7	398	34	9	13	42	1.77
14871584--14871651	34	2.0	34	83	8	86	39	10	10	39	1.73
14871593--14871657	34	1.9	33	90	3	103	40	10	10	38	1.75
14872114--14872191	16	4.8	16	81	9	95	51	8	7	32	1.62
14872106--14872169	33	1.9	34	90	3	103	53	7	7	31	1.58
14872233--14872293	15	4.1	15	75	21	56	60	11	3	24	1.46
14873799--14873844	18	2.6	18	85	0	56	65	10	0	23	1.24
14877846--14877880	2	17.5	2	100	0	70	0	48	0	51	1.00
14878657--14878720	30	2.3	26	81	10	74	50	7	6	35	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14885091--14885133	22	2.0	22	90	9	70	23	0	27	48	1.51
14885092--14885125	11	3.1	11	91	0	59	20	0	29	50	1.49
14885158--14885314	52	3.0	52	81	9	153	42	7	22	28	1.80
14886922--14887075	65	2.5	58	75	15	148	44	3	4	46	1.42
14890140--14890170	15	2.1	15	100	0	62	25	32	6	35	1.82
14894397--14895080	228	3.0	228	79	1	697	29	22	24	22	1.99
14895655--14895771	59	2.0	59	84	0	153	25	14	24	35	1.94
14898990--14899084	47	2.0	47	91	4	156	35	8	18	36	1.82
14907537--14907580	3	14.7	3	85	0	61	65	0	2	31	1.05
14915485--14915510	13	2.0	13	100	0	52	30	0	23	46	1.53
14915544--14915568	13	1.9	13	100	0	50	60	0	0	40	0.97
14915809--14915883	25	3.0	25	100	0	150	68	8	8	16	1.38
14919911--14919943	2	16.5	2	100	0	66	51	0	0	48	1.00
14920322--14920350	2	15.0	2	92	7	51	48	0	0	51	1.00
14936475--14936522	12	3.9	12	81	13	62	31	0	0	68	0.90
14936480--14936525	24	1.9	24	100	0	92	32	0	0	67	0.91
14946807--14946865	26	2.3	25	85	2	73	61	0	3	35	1.13
14946803--14946869	23	2.8	23	75	14	64	61	0	2	35	1.12
14950675--14950700	2	13.0	2	100	0	52	50	0	0	50	1.00
14951664--14951693	2	15.0	2	92	0	51	46	0	0	53	1.00
14951807--14951860	13	4.2	13	76	7	56	64	1	0	33	1.04
14952058--14952099	21	2.0	20	86	4	57	30	2	4	61	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14952074--14952106	13	2.8	12	90	9	50	27	0	3	69	1.03
14952631--14952673	22	2.0	22	90	4	70	48	0	0	51	1.00
14954262--14954312	21	2.5	21	93	3	86	50	0	0	49	1.00
14954261--14954312	20	2.5	20	88	11	79	51	0	0	48	1.00
14959107--14959135	15	1.9	15	100	0	58	24	6	0	68	1.13
14965506--14965537	5	6.2	5	92	7	55	78	0	21	0	0.76
14980798--14980858	21	2.8	20	80	11	68	34	3	0	62	1.12
15021843--15021911	26	2.6	26	90	2	111	36	10	13	40	1.78
15031487--15031516	2	15.0	2	100	0	60	0	50	0	50	1.00
15033997--15034033	19	1.9	19	94	0	65	51	10	2	35	1.51
15034739--15034796	22	2.6	23	81	10	66	27	0	10	62	1.28
15041836--15041883	17	2.8	17	87	9	71	12	0	18	68	1.20
15043749--15043784	18	2.0	18	88	0	54	5	22	38	33	1.77
15044677--15044711	14	2.5	14	85	0	52	80	0	20	0	0.72
15044665--15044701	20	1.9	19	89	10	58	78	0	21	0	0.75
15044967--15045252	48	6.0	48	81	8	298	35	22	12	29	1.91
15045014--15045246	95	2.5	91	86	7	315	37	23	12	26	1.90
15056339--15056388	1	50.0	1	87	0	73	2	0	4	94	0.38
15056851--15057224	190	2.0	191	93	1	644	37	14	11	36	1.82
15057282--15057315	12	2.8	12	90	4	50	29	0	2	67	1.05
15057840--15057887	16	3.1	15	82	8	51	75	0	0	25	0.81
15057840--15057886	15	3.1	15	81	6	58	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15058884--15058924	12	3.4	12	83	12	57	75	0	0	24	0.80
15059724--15059786	19	3.4	19	75	4	65	9	4	4	80	0.99
15059725--15059796	37	1.9	37	82	0	90	13	4	4	77	1.06
15063516--15063549	17	1.9	18	94	5	61	38	26	0	35	1.57
15064168--15064208	20	2.1	20	90	4	66	36	0	2	60	1.10
15064434--15064482	25	1.9	26	91	4	82	46	2	10	40	1.49
15066525--15066568	16	3.0	16	78	18	51	45	0	0	54	0.99
15066926--15066988	29	2.2	29	80	5	74	33	4	3	58	1.35
15068264--15068388	18	6.9	18	70	13	96	32	34	4	28	1.78
15068268--15068310	21	2.0	21	95	0	77	25	44	2	27	1.66
15068288--15068389	33	3.0	34	80	5	125	34	31	4	29	1.79
15068984--15069008	13	1.9	13	100	0	50	16	0	4	80	0.87
15071335--15071401	3	22.3	3	93	0	107	4	0	28	67	1.10
15072145--15072220	26	2.8	25	78	13	64	19	3	3	72	1.17
15072146--15072214	25	2.7	25	80	13	61	20	4	2	72	1.15
15075086--15075121	15	2.2	16	90	9	56	19	0	8	72	1.10
15075595--15075625	16	1.9	16	93	0	53	48	16	0	35	1.46
15076342--15076371	11	2.7	11	94	0	51	6	10	0	83	0.81
15076720--15076970	48	5.2	48	87	1	277	39	19	11	29	1.87
15076720--15077312	97	6.3	96	68	14	302	39	18	14	28	1.89
15076935--15077001	32	2.1	32	91	0	107	40	16	11	31	1.85
15076887--15077047	80	2.0	81	82	1	198	38	16	14	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15076965--15077330	49	7.5	49	86	3	427	38	17	15	28	1.90
15076965--15077330	146	2.5	145	85	4	486	38	17	15	28	1.90
15079870--15080599	201	3.6	199	81	5	742	42	10	11	35	1.77
15081122--15081146	5	5.0	5	100	0	50	60	40	0	0	0.97
15082678--15083127	58	7.7	58	84	5	548	44	5	13	36	1.68
15082894--15082923	15	1.9	16	93	6	53	53	0	0	46	1.00
15086140--15086166	11	2.5	11	100	0	54	92	0	0	7	0.38
15086152--15086200	17	2.8	18	81	9	66	81	0	12	6	0.86
15087742--15087989	41	6.0	41	93	0	424	22	16	23	37	1.94
15087742--15087989	124	2.0	123	93	0	424	22	16	23	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93