genome.fa.s190.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  34  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3692186--3692267	32	2.6	32	86	3	112	30	12	18	39	1.87
3692277--3692332	28	2.0	29	89	3	87	26	16	26	30	1.96
3693330--3693375	25	2.0	22	83	12	56	76	4	10	8	1.15
3693725--3693762	4	10.2	4	94	5	55	73	0	0	26	0.83
3694507--3694532	6	4.3	6	100	0	52	84	0	0	15	0.62
3694557--3694611	21	2.6	21	75	11	58	67	1	3	27	1.17
3694583--3694632	3	16.0	3	79	8	55	60	4	2	34	1.27
3694858--3696054	43	27.5	43	71	14	504	41	19	14	23	1.89
3695147--3695285	41	3.4	41	84	6	120	39	17	16	26	1.90
3694859--3695598	256	2.8	256	82	6	740	41	19	14	23	1.89
3694861--3696165	87	15.1	82	68	15	356	41	19	14	24	1.89
3695497--3696165	343	1.9	344	88	5	1016	40	20	14	24	1.90
3694859--3696119	132	9.7	131	72	12	527	41	19	14	24	1.89
3697169--3697216	9	5.7	9	87	9	66	12	8	0	79	0.94
3697176--3697214	8	4.9	8	84	9	53	10	5	0	84	0.76
3704431--3704465	15	2.3	15	90	0	52	54	0	17	28	1.43
3707962--3708002	21	2.0	20	90	4	64	70	0	2	26	0.99
3707962--3708010	15	3.2	14	86	13	62	73	0	2	24	0.94
3707970--3708014	21	2.1	21	88	8	65	75	0	4	20	0.97
3708712--3708743	6	5.3	6	100	0	64	84	0	0	15	0.63
3708711--3708821	21	5.5	21	72	13	65	69	2	4	23	1.20
3708753--3708822	22	3.2	22	78	13	72	62	2	5	28	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3708774--3708821	17	2.7	17	83	6	51	66	0	4	29	1.10
3708795--3708861	3	21.7	3	73	11	55	61	4	2	31	1.31
3709104--3709174	12	5.2	12	71	21	52	4	15	0	80	0.86
3709107--3709174	20	3.6	19	66	22	54	4	16	0	79	0.89
3709100--3709175	19	3.9	19	77	13	75	5	17	0	77	0.94
3709710--3709764	19	2.8	20	89	5	78	3	9	3	83	0.88
3710683--3710725	21	2.0	23	90	9	72	79	2	4	13	1.00
3711529--3711560	16	2.0	16	93	0	55	78	0	6	15	0.95
3711642--3711752	5	21.0	5	72	17	82	53	2	4	39	1.36
3712424--3712655	56	4.2	56	74	7	186	39	16	21	21	1.92
3724030--3724125	6	16.3	6	71	13	58	73	4	3	18	1.12
3724008--3724045	18	2.1	19	90	5	60	55	5	2	36	1.37
3724030--3724118	35	2.6	32	77	10	79	74	4	2	19	1.10
3724750--3724924	86	2.0	86	96	0	323	32	12	18	37	1.88
3725034--3725101	3	23.7	3	82	8	79	63	0	5	30	1.18
3725040--3725122	26	3.2	25	81	13	71	56	1	9	32	1.39
3725117--3725233	5	23.4	5	70	13	80	52	4	5	38	1.43
3725895--3725942	11	4.5	11	87	7	73	8	14	0	77	0.99
3725895--3725968	11	7.3	10	76	14	64	6	17	0	75	1.01
3730954--3730992	13	3.0	13	82	10	53	17	5	23	53	1.63
3731044--3731147	53	1.9	53	83	14	133	35	10	3	50	1.55
3734454--3734487	17	2.1	17	94	5	61	17	20	0	61	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3734781--3734809	14	2.0	15	93	6	51	62	13	0	24	1.32
3735718--3735792	36	2.1	36	92	0	123	32	20	8	40	1.81
3737248--3737284	16	2.2	18	85	9	51	51	16	18	13	1.76
3746846--3746882	15	2.5	15	95	0	65	16	27	8	48	1.74
3756709--3756805	20	4.9	20	77	8	92	61	5	3	29	1.33
3756702--3756854	20	7.7	19	74	8	83	60	9	1	28	1.40
3756709--3756860	10	15.2	10	67	13	55	60	8	1	28	1.37
3756710--3756814	10	10.7	9	70	14	66	61	5	2	29	1.33
3756728--3756832	29	3.6	29	73	8	77	60	9	2	27	1.42
3756959--3757007	10	4.7	10	79	5	53	51	2	4	42	1.32
3757027--3757131	8	12.4	8	71	19	63	27	0	5	65	1.21
3757042--3757126	9	9.7	9	69	16	54	29	1	5	63	1.25
3757080--3757131	19	2.9	17	83	10	68	30	0	3	65	1.10
3757270--3757321	21	2.6	19	80	17	52	26	1	1	69	1.10
3757289--3757332	12	3.8	11	85	8	61	27	2	0	70	0.99
3757295--3757360	10	6.3	10	83	10	69	28	1	4	65	1.21
3757295--3757332	11	3.3	12	85	7	53	23	2	0	73	0.95
3757260--3757379	20	5.8	19	75	15	80	32	0	5	61	1.23
3757317--3757379	10	6.4	10	81	9	67	33	0	6	60	1.22
3760136--3760182	18	2.7	18	86	3	60	34	12	8	44	1.73
3763784--3763817	16	2.1	16	88	5	50	70	0	8	20	1.13
3769282--3769330	17	3.0	17	80	17	59	4	10	10	75	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3770234--3770278	17	2.6	17	80	10	56	77	0	8	13	0.98
3770353--3770390	16	2.5	16	87	8	53	73	2	18	5	1.14
3778810--3778840	12	2.6	12	94	0	53	29	3	6	61	1.37
3780176--3780292	62	1.9	62	96	0	216	26	27	17	29	1.97
3785240--3785279	16	2.4	16	87	4	53	75	2	20	2	1.04
3789099--3789142	8	5.5	8	100	0	88	11	13	22	52	1.72
3793779--3793822	23	2.0	23	90	4	72	54	18	9	18	1.69
3794966--3795001	18	2.0	18	94	0	63	22	25	16	36	1.94
3795435--3795465	15	2.1	15	100	0	62	25	29	0	45	1.54
3798052--3798130	41	1.9	41	89	0	122	36	16	6	40	1.74
3809466--3810241	129	6.0	131	81	3	771	37	8	8	45	1.64
3809758--3810291	263	2.0	259	79	8	582	38	9	7	44	1.65
3810861--3810906	23	2.0	23	82	0	56	50	6	0	43	1.28
3813440--3813495	23	2.4	23	84	0	67	19	8	10	60	1.55
3813452--3813500	23	2.1	23	92	0	80	20	4	12	63	1.45
3815629--3815975	89	3.9	89	82	4	407	44	16	21	17	1.87
3815988--3816081	34	2.8	33	70	19	88	59	7	2	30	1.37
3816094--3816136	18	2.2	20	88	8	63	60	11	0	27	1.31
3816097--3816151	17	3.2	18	80	12	53	54	12	1	30	1.48
3816244--3816276	3	11.0	3	100	0	66	66	0	0	33	0.92
3817586--3817618	17	1.9	17	100	0	66	72	0	21	6	1.05
3817587--3817668	19	4.3	19	79	13	71	78	0	15	6	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3817586--3817657	10	7.5	10	73	14	53	77	0	16	5	0.94
3817597--3817685	26	3.7	23	77	16	76	76	1	15	6	1.05
3818711--3818762	24	2.2	24	89	0	77	44	5	13	36	1.68
3818725--3818773	24	2.0	24	96	0	89	40	4	16	38	1.67
3818773--3819141	108	3.4	108	88	2	526	33	12	17	36	1.88
3819001--3819038	20	1.9	20	94	0	67	34	13	18	34	1.89
3819318--3819415	33	3.0	32	72	8	90	38	15	12	33	1.84
3819523--3819577	18	3.1	18	89	0	74	34	18	14	32	1.91
3824840--3824926	5	17.0	5	87	1	93	56	4	3	35	1.37
3827416--3827462	25	2.0	24	84	12	62	40	17	0	42	1.49
3827706--3827750	6	7.8	6	85	5	58	77	0	4	17	0.92
3827706--3827757	24	2.2	24	82	6	61	76	0	3	19	0.93
3828845--3828871	12	2.2	12	100	0	54	77	0	0	22	0.76
3841183--3841248	33	2.0	33	100	0	132	45	9	12	33	1.73
3845950--3846021	32	2.2	32	90	0	108	31	4	11	52	1.56
3846366--3846519	74	2.1	74	92	1	254	33	13	13	39	1.84
3852506--3852547	22	1.9	22	85	9	59	26	9	4	59	1.48
3852627--3852668	15	2.7	15	79	13	50	23	19	4	52	1.65
3856884--3857013	16	8.3	16	66	21	53	23	11	8	56	1.61
3859618--3859655	7	5.3	7	90	3	58	84	2	2	10	0.83
3861089--3861192	45	2.2	46	86	5	138	58	5	10	25	1.53
3861178--3861207	6	5.2	6	96	4	53	83	0	0	16	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3862794--3862833	18	2.2	18	86	4	53	32	27	12	27	1.93
3865341--3865373	8	3.7	9	88	12	50	75	0	12	12	1.04
3865350--3865459	8	13.6	8	71	18	61	74	1	10	13	1.15
3865341--3865451	15	6.8	17	68	25	62	74	1	10	12	1.14
3865387--3865451	22	3.0	21	76	14	69	78	1	12	7	1.02
3865416--3865459	15	2.9	16	86	10	65	75	0	11	13	1.06
3865397--3865459	22	2.8	22	77	15	58	76	1	11	11	1.10
3866636--3866681	20	2.3	20	96	0	83	39	6	15	39	1.73
3866764--3866833	33	2.1	33	84	5	88	31	15	17	35	1.91
3867110--3867434	44	7.3	44	76	8	246	23	12	17	46	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93