genome.fa.s190.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  20  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2246383--2246866	240	2.0	241	88	2	724	29	16	17	36	1.92
2247155--2247207	26	2.0	26	96	0	97	26	22	24	26	2.00
2247723--2247775	26	2.0	26	88	0	79	24	20	24	30	1.99
2247817--2248293	241	2.0	242	83	3	613	23	23	31	21	1.99
2248838--2248889	26	2.0	26	88	7	79	34	21	17	26	1.95
2249689--2249741	26	2.0	26	88	0	79	28	18	24	28	1.98
2250584--2250635	25	2.0	26	88	3	79	26	21	25	26	1.99
2248989--2253038	894	4.5	885	81	9	4409	26	22	23	27	2.00
2255578--2255627	25	2.0	26	92	4	84	30	20	22	28	1.98
2256447--2256499	26	2.0	26	96	0	97	26	24	22	26	2.00
2263149--2267645	896	5.0	896	87	2	6165	26	24	23	25	2.00
2265034--2265086	26	2.0	26	88	0	79	30	24	18	26	1.98
2273392--2273470	26	3.0	26	85	7	106	30	21	18	29	1.97
2274317--2274369	26	2.0	26	85	7	72	32	24	16	26	1.97
2273418--2280325	897	7.8	895	85	4	8333	25	23	24	26	2.00
2277018--2277070	26	2.0	26	92	0	88	28	24	20	26	1.99
2277922--2277974	26	2.0	26	88	0	79	26	26	20	26	1.99
2281537--2281589	26	2.0	26	92	0	88	26	22	22	28	1.99
2286812--2286864	26	2.0	26	85	0	70	24	26	24	24	2.00
2281326--2288073	896	7.6	893	83	7	7993	25	23	24	26	2.00
2287708--2287760	26	2.0	26	88	0	79	26	24	24	24	2.00
2288393--2288445	26	2.0	26	92	0	88	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2289302--2289354	26	2.0	26	89	7	81	26	24	22	26	2.00
2290199--2290251	26	2.0	26	92	0	88	26	22	22	28	1.99
2288372--2290284	909	2.1	908	85	5	2608	26	23	23	26	2.00
2290588--2290640	26	2.0	26	92	0	88	28	24	20	26	1.99
2289920--2290688	389	2.0	388	84	3	1026	20	27	27	24	1.99
2291473--2291525	26	2.0	26	96	0	97	30	20	18	30	1.97
2292360--2292412	26	2.0	26	92	0	88	28	24	20	26	1.99
2290312--2293474	887	3.5	894	85	3	4103	25	23	24	25	2.00
2293257--2293308	25	2.0	26	88	3	79	26	21	23	28	1.99
2293526--2293566	14	2.9	15	78	10	50	75	9	2	12	1.13
2293526--2293568	13	3.1	14	80	10	52	74	9	2	13	1.16
2294972--2295038	17	4.0	17	77	9	66	49	29	1	19	1.57
2296812--2297155	33	10.5	33	81	6	396	29	20	15	33	1.94
2296812--2297155	131	2.6	131	85	7	441	29	20	15	33	1.94
2297918--2297980	23	2.8	23	85	2	92	23	25	22	28	1.99
2298048--2298109	23	2.7	23	90	2	90	25	25	19	29	1.99
2297832--2298195	131	2.8	132	84	5	470	22	22	18	36	1.95
2298094--2298323	88	2.6	88	86	2	329	20	22	18	38	1.94
2298514--2298563	21	2.5	19	81	12	64	82	6	2	10	0.92
2299911--2299977	17	4.0	17	77	9	66	49	29	1	19	1.57
2303235--2303287	26	2.0	26	96	0	97	26	24	22	26	2.00
2305001--2305053	26	2.0	26	88	0	79	24	22	24	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2305886--2305938	26	2.0	26	92	0	88	32	24	16	26	1.97
2302200--2307795	886	6.3	886	87	4	7750	25	23	24	26	2.00
2307657--2307709	26	2.0	26	88	0	79	26	24	20	28	1.99
2308596--2308647	27	1.9	27	88	0	77	38	19	23	19	1.93
2309313--2309379	17	4.0	17	77	9	66	49	29	1	19	1.57
2313833--2313857	5	5.0	5	100	0	50	80	0	0	20	0.72
2313856--2314166	33	9.5	33	84	6	393	29	20	16	33	1.95
2313855--2314166	98	3.2	98	85	6	434	29	20	16	33	1.95
2314956--2315018	23	2.8	22	83	9	83	25	25	20	28	1.99
2314962--2315028	22	3.0	22	82	6	73	26	25	19	28	1.99
2314869--2315235	133	2.8	132	85	4	472	22	22	19	36	1.95
2315088--2315148	23	2.7	23	87	2	88	27	22	18	31	1.97
2315134--2315374	88	2.8	88	84	4	326	20	19	17	41	1.90
2315548--2315607	13	4.4	14	79	10	61	81	8	0	10	0.87
2315548--2315608	14	4.1	15	75	12	63	81	8	0	9	0.86
2316919--2316969	18	3.0	17	75	8	50	50	25	0	23	1.49
2318616--2318668	26	2.0	26	85	0	70	26	18	24	30	1.98
2319506--2319558	26	2.0	26	92	0	88	26	22	22	28	1.99
2320399--2320451	26	2.0	26	88	0	79	26	20	22	30	1.98
2328646--2328698	26	2.0	26	88	0	79	30	24	20	24	1.99
2329535--2329584	26	1.9	26	91	0	82	26	22	22	30	1.99
2331316--2331387	26	2.8	26	93	0	117	25	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2327953--2343732	896	17.6	895	86	2	20520	26	23	23	26	2.00
2337600--2337652	26	2.0	26	96	0	97	26	24	22	26	2.00
2338494--2338546	26	2.0	26	92	0	88	26	22	22	28	1.99
2339392--2339444	26	2.0	26	96	0	97	26	24	22	26	2.00
2340280--2340331	26	2.0	26	96	0	95	28	21	23	26	1.99
2342078--2342130	26	2.0	26	88	0	79	26	22	22	28	1.99
2342978--2343030	26	2.0	26	92	0	88	26	22	22	28	1.99
2346042--2346069	14	2.0	14	100	0	56	21	42	14	21	1.88
2350172--2350224	26	2.0	26	88	0	79	28	22	22	26	1.99
2350198--2354920	871	5.4	867	85	4	5903	25	23	24	26	2.00
2349188--2354920	896	6.5	885	84	5	6464	25	24	24	26	2.00
2356232--2356284	26	2.0	26	88	0	79	26	24	24	24	2.00
2357051--2357103	26	2.0	26	92	0	88	24	24	24	26	2.00
2364216--2364268	26	2.0	26	85	7	72	28	24	18	28	1.98
2365946--2371075	872	5.8	880	80	8	4969	26	23	23	26	2.00
2370530--2371656	581	1.9	581	88	2	1681	30	21	21	26	1.98
2373549--2374215	334	2.0	334	97	0	1262	19	30	18	31	1.96
2381552--2381604	26	2.0	26	85	0	70	32	20	18	28	1.97
2382444--2382496	26	2.0	26	89	7	81	28	24	20	26	1.99
2384213--2384265	26	2.0	26	88	0	79	28	20	22	28	1.99
2385062--2385113	26	2.0	26	92	3	88	26	23	23	26	2.00
2385771--2385823	26	2.0	26	88	0	79	28	20	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2393220--2393272	26	2.0	26	96	0	97	26	22	24	26	2.00
2394980--2395032	26	2.0	26	85	0	70	28	22	22	26	1.99
2397671--2397723	26	2.0	26	92	0	88	28	20	24	26	1.99
2392467--2412032	896	22.0	895	77	9	16277	25	24	23	26	2.00
2398564--2398613	26	2.0	26	92	4	84	28	22	22	28	1.99
2401187--2401239	26	2.0	26	92	0	88	26	20	24	28	1.99
2402078--2402130	26	2.0	26	88	0	79	28	22	20	28	1.99
2403830--2403882	26	2.0	26	96	0	97	28	20	24	26	1.99
2404715--2404772	26	2.2	26	100	0	116	25	18	27	27	1.98
2407434--2407483	26	1.9	26	95	0	91	26	18	28	28	1.98
2409226--2409278	26	2.0	26	92	0	88	28	22	22	26	1.99
2410120--2410169	26	1.9	26	95	0	91	30	22	24	24	1.99
2411915--2411967	26	2.0	26	85	0	70	30	15	22	32	1.94
2416115--2416165	25	2.0	25	88	7	77	29	19	23	27	1.98
2416887--2416939	26	2.0	26	88	0	79	26	22	26	24	2.00
2416604--2419520	896	3.2	893	85	4	3811	26	24	24	25	2.00
2422171--2422221	26	2.0	26	88	0	75	27	23	21	27	1.99
2419523--2424974	898	6.1	896	86	2	7102	26	23	24	25	2.00
2423069--2423121	26	2.0	26	92	0	88	28	22	22	26	1.99
2433096--2433146	26	2.0	26	96	0	93	29	23	23	23	1.99
2431588--2437429	897	6.6	886	85	4	7500	26	23	23	26	2.00
2435745--2435797	26	2.0	26	88	0	79	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2441436--2441488	17	3.2	16	81	7	61	50	28	0	20	1.48
2444963--2445014	26	2.0	25	88	3	77	28	23	21	26	1.99
2445197--2445227	12	2.6	12	100	0	62	12	29	19	38	1.89
2445868--2445920	26	2.0	26	92	0	88	28	24	20	26	1.99
2442449--2450669	896	9.2	896	83	5	9322	26	23	23	26	2.00
2451847--2451899	26	2.0	26	88	0	79	24	26	24	24	2.00
2450666--2455278	870	5.2	893	85	4	5898	25	24	24	25	2.00
2454515--2454566	26	2.0	26	96	0	95	26	25	19	28	1.98
2454485--2456013	735	2.1	737	88	1	2282	27	22	22	27	1.99
2455175--2458895	896	4.1	896	83	5	4569	26	23	23	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93