genome.fa.s190.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  28  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3297452--3297968	71	7.4	70	73	12	210	52	13	17	16	1.75
3297519--3298010	174	2.8	173	89	4	686	52	12	17	17	1.74
3297452--3299660	106	21.0	102	69	13	402	52	12	16	18	1.75
3297452--3335366	70	535.4	70	68	11	2267	52	12	16	19	1.75
3297942--3298057	36	3.3	35	82	10	101	56	9	10	24	1.62
3299212--3299268	17	3.0	20	64	26	52	57	12	8	21	1.61
3299212--3299270	19	3.3	18	72	13	59	55	11	8	23	1.63
3299190--3299451	139	1.9	137	79	8	289	54	13	14	17	1.70
3299110--3299763	138	4.7	138	73	8	466	52	12	16	19	1.75
3300418--3300547	69	1.9	70	80	4	156	53	11	12	22	1.70
3301116--3301217	34	2.9	34	76	12	91	51	11	18	17	1.75
3301524--3301778	141	1.8	142	83	8	342	52	12	15	20	1.74
3302257--3302882	106	5.9	105	77	8	360	53	11	14	21	1.71
3302473--3302914	211	2.1	210	78	7	466	53	11	14	20	1.72
3303653--3303743	32	2.7	34	81	11	89	59	12	9	18	1.60
3303318--3335366	141	227.5	139	67	13	1601	52	12	16	19	1.75
3304582--3304649	36	1.9	35	87	3	100	54	11	14	19	1.70
3304904--3304985	36	2.3	34	82	10	101	56	10	18	14	1.67
3305064--3305512	246	1.8	247	79	4	530	52	13	17	17	1.75
3305971--3306281	106	2.9	105	78	7	285	55	11	13	19	1.68
3306737--3306834	36	2.8	35	84	3	133	58	10	10	21	1.60
3307999--3308185	103	1.8	103	82	2	241	56	9	15	19	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3308003--3308193	68	2.8	67	78	11	172	55	9	16	18	1.67
3309033--3309261	71	3.3	69	80	4	174	56	10	13	19	1.66
3309633--3309695	31	2.0	31	90	0	99	47	19	17	15	1.83
3309492--3309834	172	2.0	170	80	6	381	51	12	15	19	1.75
3310522--3310578	20	3.1	20	71	23	70	47	10	21	21	1.80
3310699--3310867	93	1.8	93	85	2	241	51	11	14	22	1.74
3311662--3312203	211	2.6	209	77	7	499	51	12	16	19	1.76
3312361--3312882	106	4.9	106	76	7	402	53	11	16	18	1.73
3312621--3313700	106	10.2	106	73	9	362	52	11	15	20	1.73
3313301--3313454	68	2.2	70	80	2	168	51	12	18	17	1.76
3313406--3313784	176	2.2	175	79	6	392	50	11	17	20	1.76
3313756--3313859	53	1.9	54	82	1	129	51	8	21	18	1.72
3314074--3314401	176	1.9	176	80	5	385	51	13	15	18	1.76
3315660--3315931	139	2.0	140	79	2	305	53	12	15	18	1.73
3315817--3316478	106	6.3	105	72	7	363	53	15	14	16	1.72
3315816--3316225	176	2.3	175	79	7	404	52	16	13	16	1.74
3315965--3316516	247	2.2	247	81	3	630	54	14	14	16	1.72
3316600--3316645	22	2.1	22	87	0	65	58	4	19	17	1.55
3316701--3316797	34	2.9	32	78	9	79	54	9	13	22	1.67
3316635--3316836	104	1.9	104	81	4	237	51	13	12	22	1.74
3317906--3319840	643	3.0	643	97	1	3630	50	11	17	20	1.76
3319192--3319573	104	3.6	103	77	8	281	50	11	17	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3319832--3320357	142	3.7	141	75	7	315	53	13	15	18	1.73
3319834--3322446	106	24.6	102	69	11	477	52	12	15	19	1.74
3320189--3320336	69	2.1	70	81	3	165	53	14	13	18	1.73
3319976--3320462	104	4.6	104	76	6	302	53	12	14	18	1.72
3320688--3320739	17	2.8	19	74	8	63	51	9	13	25	1.71
3320892--3321265	138	2.7	134	78	7	349	51	11	17	19	1.75
3321477--3321668	71	2.7	70	76	10	167	55	11	15	16	1.69
3321622--3321809	71	2.7	70	78	6	209	54	8	16	20	1.67
3321300--3332001	106	100.8	105	69	10	931	52	12	16	19	1.74
3322203--3322284	40	2.0	40	86	4	112	52	7	17	23	1.69
3321941--3322447	215	2.4	215	79	9	511	53	12	15	18	1.73
3322404--3322496	47	2.0	47	82	0	114	58	5	11	24	1.54
3322373--3322532	82	2.0	81	83	5	205	56	7	12	23	1.61
3322677--3336188	106	127.3	103	68	12	1085	52	11	16	19	1.75
3322854--3323177	174	1.9	174	80	5	386	54	14	12	18	1.71
3323844--3323890	18	2.7	17	77	12	51	59	6	14	19	1.56
3324351--3324439	34	2.5	37	83	5	103	52	12	14	20	1.73
3324934--3325144	72	3.0	70	81	6	228	53	12	16	18	1.73
3325023--3325336	71	4.4	70	77	7	213	51	12	16	19	1.75
3325224--3325371	72	2.1	72	81	10	169	53	10	14	20	1.71
3326145--3326453	139	2.2	140	83	6	385	51	11	17	19	1.75
3327301--3327617	176	1.8	176	81	4	406	52	14	16	17	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3327801--3327854	18	3.1	18	73	13	58	57	12	9	20	1.63
3327809--3327865	18	3.2	18	76	14	64	59	8	12	19	1.58
3327873--3328030	82	1.9	84	84	6	214	54	13	12	18	1.71
3329053--3329220	34	4.9	34	79	3	151	54	12	11	21	1.68
3329053--3329277	69	3.3	65	79	13	188	52	11	13	23	1.73
3328562--3329747	35	33.9	35	70	12	265	51	11	16	19	1.74
3329310--3329580	69	3.9	70	75	7	219	52	12	16	18	1.74
3329892--3332933	35	85.8	35	70	9	675	52	12	16	19	1.74
3331782--3331879	34	2.8	35	81	9	128	47	10	20	21	1.79
3331719--3331979	139	1.9	140	80	4	312	51	11	16	21	1.75
3332279--3332895	71	8.7	69	74	10	342	53	11	14	19	1.72
3332500--3332568	34	2.2	30	78	16	77	52	13	11	23	1.72
3332512--3332573	19	3.5	19	65	17	60	53	11	11	24	1.69
3332690--3332945	108	2.4	106	80	3	264	54	12	15	17	1.71
3332037--3333141	35	31.3	35	73	6	197	51	11	16	19	1.75
3333292--3333460	35	4.8	35	70	10	121	55	10	13	20	1.67
3333302--3333562	71	3.7	71	78	4	215	54	7	16	21	1.67
3333377--3334264	35	25.3	35	72	9	310	51	11	17	20	1.75
3334218--3334320	47	2.2	46	79	8	118	56	8	13	21	1.64
3334482--3334804	69	4.7	69	72	11	221	54	10	16	19	1.69
3334343--3335367	35	29.3	35	73	9	432	52	12	16	18	1.74
3335397--3335532	70	1.9	70	82	5	168	49	11	21	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3335396--3335552	35	4.5	35	72	7	113	49	12	21	17	1.79
3335751--3335899	72	2.1	71	81	8	169	52	11	13	22	1.72
3335751--3335899	36	4.2	34	73	15	115	52	11	13	22	1.72
3335749--3335905	71	2.2	72	79	8	169	52	10	14	22	1.72
3335861--3335934	31	2.3	33	83	9	98	60	9	8	21	1.53
3335933--3336114	35	5.1	35	69	15	106	51	12	18	17	1.77
3335933--3336067	70	1.9	70	82	5	166	48	12	19	19	1.80
3336026--3336151	37	3.4	35	74	15	112	50	10	19	19	1.75
3337189--3337413	35	6.4	35	73	10	136	15	19	13	51	1.76
3337263--3337413	71	2.1	70	80	3	160	14	19	15	50	1.78
3337321--3337464	35	4.1	35	71	15	84	17	16	14	51	1.77
3337391--3337620	105	2.2	105	81	6	277	20	13	13	53	1.71
3337214--3337652	106	4.2	104	76	8	289	17	16	12	53	1.73
3337423--3337825	35	11.4	35	69	12	139	19	15	9	54	1.69
3337743--3337841	35	2.8	35	74	7	101	22	16	5	56	1.59
3338019--3338690	35	19.2	34	73	8	239	19	16	11	51	1.75
3338019--3338620	70	8.6	69	73	8	296	19	17	11	50	1.76
3338163--3338585	105	4.0	105	74	8	265	19	19	11	50	1.77
3338846--3338930	36	2.4	36	86	2	109	22	21	9	47	1.79
3338878--3339027	70	2.1	70	81	2	167	19	22	10	48	1.78
3338914--3339067	35	4.4	34	75	11	109	21	20	10	47	1.80
3339096--3339830	35	20.9	35	71	9	287	18	15	13	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3339115--3339460	71	4.9	70	72	11	251	19	15	12	53	1.73
3339193--3339297	34	3.1	34	81	4	122	23	20	9	45	1.80
3339130--3339354	69	3.2	70	81	4	204	20	16	12	51	1.76
3339130--3339392	139	1.9	140	81	7	320	20	16	11	51	1.75
3339969--3340052	35	2.4	35	77	0	87	20	16	11	51	1.76
3340023--3340116	35	2.7	35	79	9	102	18	14	9	57	1.64
3340160--3340839	35	19.3	35	72	8	322	18	18	11	51	1.76
3340186--3353200	70	183.8	70	68	11	1073	19	17	11	50	1.76
3340153--3340429	71	3.9	70	73	8	222	17	20	12	49	1.79
3341025--3343050	35	57.4	35	69	10	332	19	16	11	51	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93