genome.fa.s190.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  21  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2457052--2457120	26	2.7	26	97	0	129	31	26	13	28	1.93
2456154--2457946	925	1.9	921	87	1	2581	26	23	23	26	2.00
2459026--2459078	26	2.0	26	92	0	88	28	22	20	28	1.99
2459925--2459977	26	2.0	26	85	0	70	26	26	18	28	1.98
2460401--2460431	11	2.8	11	100	0	62	67	0	0	32	0.91
2462192--2462244	26	2.0	26	88	0	79	28	22	20	28	1.99
2460461--2466052	895	6.2	893	84	5	6808	25	23	24	26	2.00
2465901--2465933	11	3.0	11	95	0	57	18	30	36	15	1.91
2467292--2467344	26	2.0	26	92	0	88	28	24	20	26	1.99
2468181--2468236	26	2.2	26	93	0	94	30	23	19	26	1.98
2469067--2469124	25	2.3	25	91	5	91	25	24	24	25	2.00
2467200--2470618	884	3.9	881	86	3	4594	26	23	23	25	2.00
2470887--2473282	897	2.7	896	87	2	3341	26	23	23	26	2.00
2472740--2473821	539	2.0	540	89	0	1639	29	22	19	27	1.98
2479273--2483475	895	4.7	895	87	2	5879	25	23	24	25	2.00
2482938--2482990	26	2.0	26	92	0	88	26	22	22	28	1.99
2482855--2484994	699	2.9	708	82	7	2329	26	22	24	26	2.00
2483699--2485213	758	2.0	755	88	2	2227	27	22	23	26	2.00
2485285--2485340	26	2.2	26	93	0	94	28	21	21	28	1.99
2486183--2486235	26	2.0	26	92	0	88	28	24	20	26	1.99
2484449--2489801	895	6.0	893	85	3	6862	26	23	23	26	2.00
2487078--2487130	26	2.0	26	88	0	79	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2487959--2488011	26	2.0	26	82	7	63	30	20	18	30	1.97
2499556--2499608	26	2.0	26	81	0	61	30	20	22	26	1.98
2498145--2500318	895	2.5	863	83	5	2668	27	23	22	26	2.00
2499552--2501056	738	2.0	736	88	2	2193	27	22	22	26	1.99
2501188--2501240	26	2.0	26	92	0	88	32	24	16	26	1.97
2500268--2504632	890	4.9	893	86	3	5860	26	23	23	26	2.00
2508045--2508097	26	2.0	26	85	0	70	26	18	22	32	1.97
2506271--2511185	897	5.5	897	85	3	6057	25	23	24	26	2.00
2506271--2511185	893	5.5	896	85	4	6024	25	23	24	26	2.00
2510705--2510757	26	2.0	26	92	0	88	26	22	22	28	1.99
2511953--2512005	26	2.0	26	88	0	79	30	24	18	26	1.98
2514603--2514653	26	2.0	26	92	0	84	29	21	21	27	1.99
2513527--2517198	897	4.1	893	84	4	4565	25	23	24	26	2.00
2523177--2523229	26	2.0	26	85	0	70	28	18	22	30	1.98
2525839--2525891	26	2.0	26	92	0	88	26	22	22	28	1.99
2526153--2526205	26	2.0	26	92	0	88	26	22	22	28	1.99
2527047--2527099	26	2.0	26	85	0	70	28	20	18	32	1.97
2526116--2529581	897	3.9	894	86	1	4839	26	23	24	26	2.00
2527944--2527996	26	2.0	26	85	0	70	26	24	20	28	1.99
2535888--2535940	26	2.0	26	92	0	88	26	22	22	28	1.99
2534043--2538418	898	5.0	884	84	6	5593	25	23	24	26	2.00
2541148--2541172	9	2.8	9	100	0	50	24	36	12	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2543683--2543735	26	2.0	26	92	0	88	26	22	22	28	1.99
2543914--2546052	883	2.4	883	87	3	3056	28	22	22	25	1.99
2546052--2548778	895	3.1	893	88	1	3907	25	23	24	25	2.00
2556166--2556218	26	2.0	26	96	0	97	26	24	22	26	2.00
2554911--2557993	908	3.4	894	86	4	3960	25	24	23	25	2.00
2557066--2557116	26	2.0	26	88	0	75	31	19	19	29	1.97
2557940--2558013	26	2.8	26	91	0	130	27	20	20	32	1.97
2558745--2558797	26	2.0	26	96	0	97	26	24	22	26	2.00
2559009--2559049	13	2.9	14	85	7	57	78	9	0	12	0.98
2559009--2559049	14	2.9	15	82	10	59	78	9	0	12	0.98
2559032--2559078	19	2.5	19	86	10	69	80	4	4	10	0.98
2560445--2560511	17	4.0	17	77	9	66	49	29	1	19	1.57
2566052--2567161	579	1.9	579	89	1	1724	30	22	19	27	1.98
2567289--2567341	26	2.0	26	96	0	97	26	24	22	26	2.00
2569051--2569103	26	2.0	26	96	0	97	26	24	22	26	2.00
2569947--2569999	26	2.0	26	92	0	88	26	22	22	28	1.99
2568180--2581381	896	14.9	893	87	3	17700	25	23	24	25	2.00
2570836--2570888	26	2.0	26	96	0	97	26	24	22	26	2.00
2577904--2577956	26	2.0	26	96	0	97	26	24	22	26	2.00
2579686--2579738	26	2.0	26	92	0	88	28	22	20	28	1.99
2576141--2581381	895	5.9	895	89	2	7653	25	23	24	25	2.00
2580582--2580634	26	2.0	26	85	0	70	28	20	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2580600--2583982	820	3.9	819	78	11	2875	26	23	24	25	2.00
2581420--2587593	893	6.9	891	86	4	8337	26	23	24	25	2.00
2584082--2584134	26	2.0	26	81	0	61	26	24	20	28	1.99
2584974--2585026	26	2.0	26	92	0	88	28	24	20	26	1.99
2586749--2586801	26	2.0	26	85	0	70	26	22	20	30	1.98
2593272--2593344	22	3.0	24	90	7	105	28	21	20	28	1.98
2594153--2594204	26	2.0	26	88	0	77	32	19	19	28	1.96
2594151--2599948	895	6.5	894	86	2	7748	25	23	24	26	2.00
2598610--2598662	26	2.0	26	85	0	70	28	20	20	30	1.98
2599505--2599557	26	2.0	26	88	0	79	24	22	24	28	2.00
2599983--2600035	26	2.0	26	96	0	97	26	24	22	26	2.00
2599469--2600437	489	2.0	478	88	3	1431	23	23	25	27	2.00
2600879--2600931	26	2.0	26	88	0	79	30	24	20	24	1.99
2599947--2606321	896	7.1	895	84	5	7874	26	24	24	25	2.00
2604497--2604549	26	2.0	26	81	0	61	24	22	24	28	2.00
2605758--2606922	584	2.0	584	87	1	1665	28	23	21	26	1.99
2607888--2607940	26	2.0	26	92	0	88	28	22	22	26	1.99
2608717--2608769	26	2.0	26	88	0	79	28	22	20	28	1.99
2612451--2614401	884	2.2	888	86	3	2681	27	23	22	27	1.99
2614631--2614683	26	2.0	26	88	0	79	33	22	16	26	1.96
2615184--2615234	26	2.0	26	92	0	84	29	23	19	27	1.98
2616064--2616116	26	2.0	26	88	0	79	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2614964--2620691	897	6.5	891	86	4	6870	25	24	24	25	2.00
2619576--2619628	26	2.0	26	88	0	79	30	24	18	26	1.98
2620740--2620778	14	2.9	14	88	3	62	76	10	0	12	1.01
2622175--2622218	17	2.6	17	82	7	54	52	27	0	20	1.47
2628091--2648527	895	22.9	896	86	3	26243	25	23	24	26	2.00
2631713--2631765	26	2.0	26	85	0	70	26	20	20	32	1.98
2632601--2632653	26	2.0	26	85	0	70	28	20	20	30	1.98
2635264--2635316	26	2.0	26	92	0	88	26	24	24	24	2.00
2636164--2636216	26	2.0	26	92	0	88	26	22	22	28	1.99
2637058--2637110	26	2.0	26	92	0	88	28	24	20	26	1.99
2637953--2638005	26	2.0	26	92	0	88	30	22	18	28	1.98
2642379--2642450	26	2.8	26	97	0	135	27	27	18	26	1.98
2645079--2645131	26	2.0	26	88	0	79	26	24	22	26	2.00
2641508--2648527	893	7.9	894	87	3	9621	25	23	24	25	2.00
2646863--2646915	26	2.0	26	96	0	97	26	24	22	26	2.00
2655008--2655035	11	2.5	11	100	0	56	17	32	32	17	1.94
2655787--2655839	26	2.0	26	88	0	79	26	20	22	30	1.98
2654783--2659980	890	5.9	886	83	5	6098	26	23	24	25	2.00
2657573--2657625	26	2.0	26	85	7	72	30	22	16	30	1.96
2658456--2658508	26	2.0	26	96	0	97	26	24	22	26	2.00
2660083--2663622	897	4.0	896	86	2	4789	26	23	23	26	2.00
2662818--2662870	26	2.0	26	100	0	106	26	22	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2666060--2679620	886	15.3	884	84	5	16207	25	24	24	25	2.00
2670587--2670639	26	2.0	26	96	0	97	26	24	22	26	2.00
2672324--2672377	26	2.1	26	89	0	81	29	22	20	27	1.98
2675863--2675913	26	2.0	26	92	0	84	29	23	19	27	1.98
2671473--2679561	893	9.1	885	86	4	10610	25	24	24	25	2.00
2676744--2676796	26	2.0	26	96	0	97	26	24	22	26	2.00
2678543--2678595	26	2.0	26	88	0	79	26	24	20	28	1.99
2679424--2679475	25	2.0	26	92	3	88	26	25	21	26	1.99
2679702--2679734	12	2.6	13	80	9	50	75	9	0	15	1.03
2686049--2686098	14	3.3	15	78	15	50	86	4	8	2	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93