genome.fa.s190.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  29  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3342219--3342323	34	3.1	34	83	4	122	25	20	7	45	1.78
3342122--3342469	104	3.3	104	77	6	279	21	14	11	53	1.72
3342124--3342514	69	5.6	69	76	8	229	20	15	11	52	1.73
3342123--3343056	106	8.8	106	71	9	311	18	15	12	52	1.73
3343227--3344228	35	28.5	35	71	12	331	19	17	11	50	1.76
3343514--3343713	106	1.9	106	82	6	253	19	22	11	47	1.81
3343404--3353209	35	277.8	35	68	11	939	19	17	11	50	1.76
3343334--3343995	317	2.1	316	80	3	742	19	17	12	50	1.77
3344037--3344189	69	2.2	70	85	4	202	20	15	7	56	1.62
3344382--3344457	33	2.2	34	84	9	93	18	17	13	51	1.76
3344451--3359007	105	138.0	104	68	12	1058	19	17	11	50	1.76
3344947--3345009	19	3.5	19	68	12	51	20	6	12	60	1.54
3345550--3353476	35	225.4	35	68	11	1332	19	17	11	50	1.76
3345798--3346048	106	2.4	105	80	7	276	17	16	12	52	1.74
3345804--3346096	106	2.8	105	77	8	258	19	16	12	51	1.75
3346133--3346388	141	1.8	141	80	8	315	18	16	12	52	1.74
3346584--3347119	176	3.1	174	76	9	396	19	18	11	50	1.76
3347320--3347716	71	5.6	70	76	9	227	21	17	10	51	1.75
3348457--3348723	133	2.0	133	99	0	525	22	16	10	49	1.76
3348919--3349054	71	1.9	73	87	3	204	20	16	6	56	1.62
3349407--3350052	106	6.1	105	75	7	281	20	16	11	51	1.75
3349777--3349838	19	3.4	19	69	13	58	20	4	12	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3350267--3350532	144	1.8	144	83	3	347	19	20	12	48	1.80
3350708--3350767	31	1.9	31	93	0	102	16	16	11	55	1.70
3350604--3350853	137	1.8	137	83	5	335	17	18	13	51	1.76
3350412--3350855	172	2.6	170	77	5	435	18	17	13	51	1.76
3353379--3353482	36	2.9	35	76	5	93	21	22	7	49	1.74
3353802--3354265	35	13.2	35	72	8	201	20	17	11	50	1.76
3353802--3354143	70	4.9	70	75	6	235	21	15	11	51	1.74
3354643--3355743	35	31.3	35	69	9	351	18	17	12	51	1.76
3354643--3355390	141	5.3	140	72	11	408	18	16	12	52	1.75
3355027--3355232	106	2.0	105	80	6	238	20	16	11	51	1.75
3355145--3355390	72	3.5	71	72	12	168	19	16	11	52	1.73
3355099--3355474	178	2.1	177	84	1	486	19	16	11	51	1.75
3355147--3355411	143	1.9	141	79	9	306	20	16	12	50	1.76
3355518--3355776	35	7.5	35	73	7	100	20	17	11	50	1.76
3355909--3355974	34	1.9	34	87	0	96	19	28	7	43	1.78
3355908--3356180	35	7.8	35	74	3	165	17	20	13	49	1.79
3355943--3356181	70	3.4	69	78	7	241	16	18	14	50	1.78
3355950--3356485	35	15.3	35	67	9	135	17	16	14	51	1.77
3356450--3356515	30	2.2	29	78	5	69	16	13	12	57	1.65
3356569--3356619	26	2.0	26	88	0	75	13	15	7	62	1.52
3356645--3356724	35	2.3	35	82	0	97	16	17	12	53	1.72
3356746--3356858	35	3.2	35	82	0	118	18	15	11	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3356994--3357245	70	3.6	68	71	12	179	15	16	16	52	1.75
3356866--3357267	35	11.4	35	72	9	158	16	16	14	52	1.75
3357049--3357560	35	14.6	35	72	9	220	17	16	13	51	1.76
3357733--3357812	36	2.3	34	80	6	97	22	15	7	55	1.65
3357988--3359039	35	29.9	35	73	8	492	19	17	11	50	1.77
3357988--3359509	105	14.3	106	71	10	550	19	17	12	51	1.76
3358822--3359099	35	7.9	34	72	13	158	18	20	10	50	1.77
3359158--3359822	35	18.9	35	71	6	306	17	16	13	52	1.75
3359148--3359331	69	2.6	69	84	1	224	19	17	11	52	1.74
3357988--3360936	70	41.5	70	69	11	485	19	17	12	51	1.76
3359131--3359384	104	2.4	103	75	5	260	18	16	11	54	1.70
3360020--3360132	35	3.2	35	83	2	129	20	14	9	55	1.66
3360136--3360656	35	14.8	35	75	8	260	18	18	12	51	1.77
3360240--3360991	105	7.1	104	74	10	417	18	18	11	51	1.76
3360137--3360900	35	21.8	35	72	9	213	19	17	12	51	1.76
3360635--3360882	71	3.5	70	80	2	230	19	16	12	51	1.76
3360836--3361139	71	4.3	73	77	7	225	20	17	8	53	1.69
3360916--3360993	38	2.1	37	80	4	86	16	17	8	56	1.65
3360715--3361140	35	12.0	34	69	11	167	20	16	10	52	1.72
3361293--3361987	35	19.9	34	71	10	321	19	16	12	51	1.76
3361438--3361586	69	2.1	70	82	3	176	20	18	10	49	1.77
3361399--3361661	104	2.5	105	78	1	278	20	17	10	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3368100--3370476	35	67.0	35	69	12	508	20	16	11	51	1.75
3368103--3368205	36	2.9	36	85	5	140	23	16	8	51	1.72
3368415--3368549	72	1.9	71	86	4	191	22	14	11	51	1.75
3368421--3368619	69	2.8	71	80	5	199	21	17	11	50	1.76
3368505--3368694	104	1.8	105	89	3	303	19	17	11	51	1.75
3368609--3369220	71	8.7	70	70	11	214	19	14	12	53	1.73
3369192--3369284	33	2.7	33	83	11	100	21	13	7	56	1.62
3369192--3369319	69	1.9	68	83	1	166	21	14	7	56	1.64
3369602--3452560	105	780.3	105	68	12	6966	19	16	11	51	1.75
3369674--3370499	71	11.7	70	73	8	354	19	17	11	51	1.75
3370409--3370482	36	2.1	35	82	2	85	22	17	8	51	1.72
3370663--3372719	35	58.8	35	69	11	537	19	16	12	51	1.75
3370785--3370861	34	2.2	35	88	2	111	19	19	12	48	1.81
3370935--3371131	107	1.8	105	81	9	238	20	17	7	54	1.66
3371253--3371441	72	2.7	72	79	8	183	21	15	10	52	1.71
3371679--3371826	69	2.1	69	81	10	169	18	16	11	52	1.73
3371851--3371883	12	2.8	12	100	0	66	24	15	0	60	1.35
3371851--3371886	6	6.0	6	86	0	54	22	16	0	61	1.35
3371998--3372077	34	2.3	34	86	4	106	22	20	11	46	1.82
3371897--3372148	69	3.6	70	77	4	186	20	14	12	53	1.72
3372086--3372224	71	2.0	71	82	4	174	17	16	12	52	1.74
3372127--3372272	71	2.0	72	81	1	168	16	18	13	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3372350--3372628	106	2.6	104	81	4	299	18	13	13	54	1.71
3372812--3372903	35	2.6	35	79	6	96	25	17	7	50	1.72
3372909--3373676	35	21.8	34	71	10	242	18	18	12	50	1.78
3373426--3373675	106	2.4	104	80	7	249	21	18	11	49	1.78
3373741--3373840	35	2.8	35	79	8	105	17	17	9	57	1.64
3374103--3374223	34	3.5	35	78	3	120	19	22	11	46	1.82
3374005--3374834	35	23.6	35	70	13	251	20	16	11	50	1.76
3374484--3374752	104	2.6	105	80	10	259	21	13	12	52	1.74
3374575--3374765	71	2.7	71	79	6	208	21	13	12	51	1.74
3374578--3374751	36	4.9	35	76	8	165	21	13	13	51	1.75
3374814--3374887	36	2.1	35	89	2	112	14	16	12	56	1.67
3374106--3377238	35	88.5	35	69	11	439	19	17	12	51	1.76
3374932--3375131	106	1.9	106	79	7	228	17	19	12	51	1.76
3375332--3375401	34	2.1	34	86	0	95	20	22	12	44	1.85
3375766--3376099	71	4.7	69	73	10	205	18	15	11	54	1.70
3375224--3377238	106	19.0	106	69	12	470	19	17	12	51	1.75
3375201--3377238	70	28.8	70	69	11	487	18	16	12	51	1.75
3377392--3378486	35	31.2	35	70	10	364	20	18	11	49	1.79
3377990--3378139	71	2.1	71	80	9	164	20	13	14	51	1.76
3377978--3378197	107	2.1	106	80	6	241	22	13	14	50	1.77
3378324--3378386	32	1.9	33	84	9	85	22	19	11	47	1.80
3378698--3380636	35	54.7	34	69	12	382	18	16	12	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3378706--3378860	69	2.2	70	83	1	186	20	16	10	52	1.73
3378641--3378897	139	1.8	140	80	5	306	20	16	10	52	1.73
3379168--3379510	141	2.4	141	77	8	313	16	16	12	54	1.71
3381006--3381199	69	2.8	69	73	14	182	21	18	9	50	1.75
3381391--3381524	36	3.8	35	78	7	110	18	13	13	54	1.71
3381391--3381575	71	2.6	71	79	9	200	20	14	12	52	1.73
3380995--3382900	35	53.9	35	67	14	285	18	17	12	50	1.77
3382002--3384108	35	59.5	35	69	10	588	19	16	12	51	1.75
3382103--3382265	69	2.3	70	80	1	184	17	20	12	49	1.79
3382216--3382400	71	2.6	70	78	4	201	17	18	12	50	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93