genome.fa.s190.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  38  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4426554--4426612	30	2.0	30	96	0	109	37	0	32	30	1.58
4427987--4428020	16	2.1	17	88	5	52	20	11	14	52	1.73
4429848--4429879	10	3.1	10	91	8	55	46	0	9	43	1.35
4434914--4435185	135	2.0	135	98	0	526	36	9	13	40	1.77
4435869--4435911	21	2.2	19	83	8	50	34	2	4	58	1.32
4436072--4436215	55	2.6	54	77	6	148	50	11	8	30	1.67
4437234--4437300	20	3.3	20	85	0	98	35	17	13	32	1.89
4438509--4438538	2	15.0	2	100	0	60	50	0	0	50	1.00
4442102--4442148	20	2.3	20	100	0	94	46	0	0	53	1.00
4450785--4450832	23	2.1	23	84	0	60	75	8	4	12	1.18
4452421--4452464	20	2.3	19	81	11	54	34	4	22	38	1.75
4452828--4452880	24	2.2	25	86	10	74	22	1	13	62	1.40
4472098--4472177	23	3.5	23	81	5	90	57	6	2	33	1.37
4472116--4472171	24	2.4	24	90	3	87	55	3	3	37	1.35
4472234--4472279	21	2.1	22	88	4	67	43	0	6	50	1.28
4472911--4472951	22	1.9	21	90	5	64	82	4	0	12	0.81
4473110--4473149	16	2.5	15	88	8	53	70	0	0	30	0.88
4473353--4473408	22	2.6	20	78	15	58	76	8	0	14	1.00
4474015--4474054	20	2.0	21	90	5	64	60	0	0	40	0.97
4474870--4474903	15	2.2	16	89	5	52	52	5	2	38	1.41
4478743--4478797	27	2.1	26	86	10	76	38	9	0	52	1.33
4479405--4479464	23	2.6	23	70	15	61	41	6	3	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4479643--4479684	19	2.3	19	83	4	50	16	4	7	71	1.26
4481038--4481070	15	2.3	15	89	5	50	75	6	3	15	1.11
4481219--4481244	2	13.0	2	100	0	52	50	0	0	50	1.00
4482146--4482179	12	2.8	12	86	0	50	67	0	0	32	0.91
4482478--4482517	16	2.5	15	88	8	53	70	0	0	30	0.88
4485054--4485158	52	2.0	52	87	7	151	45	5	16	32	1.70
4487746--4487824	39	2.0	39	85	0	104	30	16	16	36	1.91
4488442--4488501	22	2.8	22	82	5	70	38	8	16	36	1.79
4491364--4491514	62	2.4	62	86	7	216	48	7	11	32	1.67
4493549--4493605	22	2.5	24	82	8	82	56	3	3	36	1.34
4493551--4493611	23	2.7	22	87	5	86	57	4	3	34	1.36
4493661--4493710	22	2.2	23	82	3	66	48	2	4	46	1.32
4494346--4494384	20	2.0	20	89	0	60	82	5	0	12	0.83
4494542--4494581	16	2.5	15	88	8	53	70	0	0	30	0.88
4496294--4496327	15	2.2	16	89	5	52	52	5	2	38	1.41
4500170--4500224	27	2.1	26	86	10	76	38	9	0	52	1.33
4500833--4500892	23	2.6	23	70	15	61	41	6	3	48	1.46
4501073--4501114	19	2.3	19	83	4	50	16	4	7	71	1.26
4502468--4502500	15	2.3	15	89	5	50	75	6	3	15	1.11
4502649--4502682	2	17.0	2	100	0	68	50	0	0	50	1.00
4503917--4503956	16	2.5	15	88	8	53	70	0	0	30	0.88
4506508--4506612	52	2.0	52	88	3	158	45	4	17	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4510154--4510204	25	2.0	27	88	7	79	50	7	7	33	1.60
4510175--4510256	22	3.7	22	78	4	76	42	8	9	39	1.68
4513289--4513337	22	2.1	25	85	11	68	34	6	10	48	1.62
4519151--4519193	9	4.7	9	88	2	59	27	0	4	67	1.10
4521411--4521438	8	3.5	8	100	0	56	42	0	0	57	0.99
4524133--4524175	11	3.9	11	90	0	68	27	0	25	46	1.53
4524200--4524308	52	2.1	53	84	5	141	42	11	20	25	1.86
4524225--4524357	53	2.5	51	80	12	135	38	9	24	27	1.87
4527539--4527583	24	1.9	23	82	13	56	62	0	13	24	1.31
4527822--4527858	18	2.2	17	86	13	51	70	5	2	21	1.20
4528777--4528830	21	2.6	21	96	0	99	37	25	18	18	1.94
4529623--4529658	12	3.0	12	91	0	63	50	5	8	36	1.56
4535787--4535835	20	2.4	21	93	3	82	32	20	26	20	1.97
4543396--4543482	34	2.6	33	78	8	104	16	14	16	52	1.74
4543608--4544001	34	11.5	34	71	12	130	23	13	13	49	1.77
4543780--4543926	68	2.1	69	80	7	165	26	13	8	51	1.70
4544635--4544993	186	1.9	186	85	2	497	50	7	12	29	1.69
4545203--4545229	9	3.0	9	100	0	54	22	0	33	44	1.53
4547047--4547218	85	2.0	85	86	2	238	34	15	15	34	1.90
4548825--4548859	18	1.9	18	88	0	52	25	0	8	65	1.21
4554836--4554890	22	2.5	21	82	11	58	41	1	3	52	1.29
4562373--4562408	12	3.0	12	91	0	63	50	5	8	36	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4565353--4565420	21	3.3	21	70	22	63	58	10	2	27	1.45
4573200--4573237	12	3.2	12	96	0	67	26	21	34	18	1.96
4575788--4575927	55	2.6	54	80	8	151	29	13	17	40	1.87
4576275--4576677	34	11.7	35	69	11	199	20	16	12	49	1.78
4576803--4577196	34	11.5	34	73	9	160	23	13	13	50	1.76
4577829--4578182	186	1.9	185	84	4	480	49	8	12	29	1.69
4580224--4580393	83	2.0	85	84	4	220	34	15	15	34	1.90
4581992--4582026	18	1.9	18	88	0	52	25	0	8	65	1.21
4585550--4585580	15	2.0	16	93	6	55	64	0	0	35	0.94
4586497--4586842	144	2.4	146	79	5	373	32	13	12	41	1.82
4594125--4594152	7	4.0	7	100	0	56	28	28	0	42	1.56
4595914--4595973	14	4.2	14	73	2	57	81	1	13	3	0.89
4595915--4595949	18	1.9	18	88	0	52	85	2	8	2	0.79
4597192--4597225	15	2.4	14	85	9	50	88	2	5	2	0.70
4597264--4597575	129	2.4	130	85	7	416	39	23	8	28	1.85
4597471--4597531	32	1.9	32	93	0	104	39	24	8	27	1.84
4597487--4597622	42	3.1	42	88	6	182	40	24	6	28	1.80
4597359--4597681	176	1.8	176	86	2	470	38	22	9	28	1.86
4597671--4597749	41	1.9	42	84	2	106	36	20	11	31	1.88
4598088--4598589	105	4.7	104	74	12	324	33	15	14	36	1.88
4598547--4598589	22	2.0	22	86	4	61	30	18	18	32	1.95
4598552--4598598	22	2.1	22	88	0	67	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4598753--4598824	27	2.6	27	77	4	81	72	11	5	11	1.28
4600368--4600414	19	2.5	19	100	0	94	34	4	25	36	1.76
4606585--4607951	463	2.9	461	83	6	1610	36	9	7	46	1.65
4606704--4607951	476	2.7	461	83	6	1519	36	9	7	46	1.64
4615137--4615161	13	1.9	13	100	0	50	48	16	4	32	1.64
4615089--4615207	56	2.2	55	80	5	134	51	11	7	29	1.66
4620952--4622323	461	3.0	459	83	6	1693	35	11	8	44	1.70
4624049--4624121	21	3.4	20	73	14	56	38	0	1	60	1.06
4624060--4624116	20	2.6	23	78	13	66	38	0	1	59	1.08
4624794--4624833	20	2.0	20	85	0	53	62	0	0	37	0.95
4626086--4626121	2	18.0	2	94	0	63	50	2	0	47	1.15
4629350--4629391	17	2.3	19	84	12	52	57	2	0	40	1.12
4638400--4638433	15	2.3	15	90	5	52	58	2	0	38	1.13
4639507--4639568	32	1.9	32	83	6	81	22	1	1	74	1.00
4639852--4639885	14	2.4	14	85	0	50	47	0	0	52	1.00
4639987--4640019	15	2.1	16	88	5	50	48	36	3	12	1.56
4643377--4643473	13	7.3	13	70	11	63	49	0	0	50	1.00
4643406--4643502	23	4.0	23	78	12	88	47	1	1	50	1.14
4643393--4643489	26	3.8	25	80	12	99	48	1	0	50	1.07
4645008--4645074	26	2.6	25	76	2	71	43	1	0	55	1.09
4647313--4647364	24	2.2	22	83	10	59	53	3	1	40	1.30
4649420--4649459	19	2.0	19	85	9	53	30	7	0	62	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4653109--4653196	6	13.3	6	74	18	61	76	5	5	12	1.14
4655119--4655149	2	15.5	2	100	0	62	48	0	0	51	1.00
4660195--4660247	21	2.5	21	90	6	81	47	0	0	52	1.00
4661659--4661715	26	2.2	25	87	3	78	49	1	0	49	1.11
4661675--4661707	17	1.9	17	88	11	50	48	3	0	48	1.17
4662760--4662826	26	2.6	25	71	2	62	41	1	1	55	1.18
4662999--4663028	15	1.9	16	93	6	53	66	0	0	33	0.92
4665066--4665117	23	2.2	23	86	3	68	51	3	1	42	1.31
4666131--4666173	17	2.5	17	85	7	61	18	4	0	76	0.95
4667249--4667288	19	2.0	19	85	9	53	30	7	0	62	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93