genome.fa.s190.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  37  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4209128--4209203	36	2.1	38	80	14	88	36	5	2	55	1.37
4209280--4209315	19	1.9	19	88	5	56	44	0	2	52	1.15
4209271--4209315	19	2.5	17	82	7	54	44	0	4	51	1.21
4209322--4209413	22	4.5	21	75	14	68	32	1	9	56	1.39
4209293--4209443	10	15.2	10	65	10	60	39	0	7	52	1.34
4209370--4209413	18	2.4	18	84	0	61	27	0	9	63	1.24
4211781--4211819	18	2.2	18	86	9	53	46	10	17	25	1.80
4211790--4211831	18	2.3	19	80	12	52	52	7	9	30	1.61
4211897--4211953	20	3.0	20	79	5	64	17	1	40	40	1.60
4215122--4215152	13	2.4	13	94	0	53	54	9	6	29	1.57
4215778--4215802	2	12.5	2	100	0	50	52	0	0	48	1.00
4216962--4216999	19	2.0	19	100	0	76	31	21	15	31	1.94
4223010--4223051	11	4.2	11	80	20	56	57	0	0	42	0.99
4223059--4223108	27	1.9	27	88	8	77	34	4	6	56	1.43
4223175--4223240	29	2.3	29	83	0	78	27	9	13	50	1.72
4224091--4224136	21	2.4	18	85	10	56	58	23	0	17	1.38
4226453--4226500	20	2.5	20	89	3	71	39	14	22	22	1.91
4227687--4227736	21	2.4	21	83	3	57	28	14	2	56	1.49
4229922--4229954	12	2.8	12	90	0	57	24	15	6	54	1.63
4232826--4232916	27	3.6	25	75	8	78	76	1	17	4	1.00
4233488--4233568	22	3.7	22	81	0	81	34	18	17	29	1.94
4233507--4233604	22	4.5	22	76	6	83	33	19	18	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4233800--4234199	32	12.4	33	70	10	139	37	21	12	29	1.90
4233987--4234228	32	7.6	32	73	9	147	40	20	10	28	1.86
4233988--4234240	31	7.9	31	73	6	157	39	19	11	29	1.87
4234381--4234468	32	2.8	31	83	8	106	34	14	17	34	1.90
4238162--4238210	22	2.2	22	89	7	73	46	2	4	46	1.33
4238728--4238798	20	3.5	20	79	7	81	56	21	1	21	1.50
4238780--4238836	13	4.5	13	72	14	57	49	26	10	14	1.75
4238824--4238908	20	4.3	20	73	10	77	38	27	18	15	1.91
4238815--4238952	39	3.6	38	75	8	109	43	26	13	16	1.85
4238903--4238955	19	2.8	20	82	8	65	49	26	5	18	1.70
4238815--4238948	19	6.9	19	74	13	85	42	26	13	17	1.86
4241664--4241709	22	2.1	22	84	15	60	52	0	2	45	1.13
4242112--4242156	23	2.0	23	86	8	65	42	0	4	53	1.21
4242352--4242395	22	2.0	23	86	8	65	40	0	0	59	0.98
4242348--4242395	23	2.1	23	88	3	71	39	0	0	60	0.97
4242714--4242738	4	6.2	4	100	0	50	76	0	0	24	0.80
4243140--4243176	17	2.2	17	90	9	58	10	2	8	78	1.06
4244818--4244874	7	8.3	7	82	3	71	24	0	28	47	1.52
4244879--4244950	13	5.6	13	73	3	56	18	2	34	44	1.64
4245003--4245052	24	2.1	24	92	0	82	24	2	30	44	1.65
4246070--4246100	12	2.6	12	89	0	53	12	16	0	70	1.16
4248844--4248930	39	2.2	39	83	2	102	36	9	13	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4248935--4249132	40	5.0	40	79	6	188	37	15	14	32	1.88
4248920--4249132	79	2.7	79	81	2	212	37	15	14	33	1.87
4249073--4249156	40	2.1	40	86	0	114	41	11	13	33	1.80
4249241--4249400	40	4.0	39	73	8	115	41	13	9	35	1.77
4249743--4249794	27	1.9	27	88	0	77	25	15	15	44	1.85
4250602--4250626	11	2.3	11	100	0	50	0	8	0	92	0.40
4253570--4253689	7	18.6	7	69	19	64	15	0	35	49	1.44
4253568--4253601	18	1.9	17	94	5	59	11	0	41	47	1.40
4253593--4253646	19	2.9	18	78	8	54	11	0	38	50	1.38
4253570--4253689	13	9.3	13	66	19	56	15	0	35	49	1.44
4253639--4253689	20	2.5	21	81	6	61	17	0	31	50	1.46
4253696--4253753	26	2.2	26	96	0	107	25	3	29	41	1.72
4253781--4253850	26	2.7	26	75	14	72	14	2	40	42	1.60
4253798--4253840	19	2.3	18	84	11	59	16	4	37	41	1.69
4254703--4254729	9	3.0	9	100	0	54	22	11	0	66	1.22
4261758--4261803	21	2.2	21	88	0	65	21	15	26	36	1.93
4262006--4262081	32	2.4	32	81	12	86	43	6	0	50	1.28
4262955--4263068	31	3.7	30	81	8	131	45	4	8	41	1.55
4267232--4267289	3	19.3	3	100	0	116	67	0	0	32	0.91
4268802--4268845	22	2.0	22	90	0	70	43	11	13	31	1.80
4272492--4272554	25	2.7	23	85	5	81	38	19	26	15	1.92
4272702--4272745	22	2.0	22	90	0	70	43	11	13	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4278420--4278457	16	2.4	16	95	0	67	34	21	15	28	1.94
4281747--4281985	132	1.8	132	90	4	367	25	14	11	48	1.76
4300951--4301009	16	3.7	16	84	4	75	37	1	0	61	1.07
4300951--4301021	32	2.2	33	84	2	99	40	1	1	56	1.17
4306613--4306656	20	2.2	20	84	8	54	22	0	18	59	1.38
4308069--4308103	18	1.9	18	94	0	61	20	22	22	34	1.97
4311298--4311329	2	16.0	2	100	0	64	50	0	0	50	1.00
4314624--4314681	25	2.4	23	78	15	64	15	10	1	72	1.19
4315591--4315635	25	2.0	24	83	16	60	4	17	0	77	0.92
4315593--4315632	20	2.2	19	83	16	50	2	17	0	80	0.83
4317938--4317963	11	2.4	11	100	0	52	76	15	0	7	0.99
4328987--4329316	47	7.0	47	80	6	310	30	10	19	40	1.85
4328987--4329316	94	3.5	95	82	7	359	30	10	19	40	1.85
4329009--4329313	141	2.1	142	82	4	366	30	10	19	40	1.85
4329320--4329470	48	3.2	47	80	3	187	28	9	21	41	1.84
4329450--4329665	87	2.5	88	81	6	249	29	14	15	40	1.87
4329444--4329665	44	5.1	44	77	5	209	30	13	15	40	1.87
4329823--4329897	3	26.3	3	80	15	88	26	0	0	73	0.84
4329823--4329904	11	7.4	11	85	6	96	25	0	0	74	0.82
4329817--4329911	15	6.1	15	75	18	79	24	0	1	74	0.88
4336070--4336108	2	19.5	2	100	0	78	48	0	0	51	1.00
4336417--4336453	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4338350--4338654	129	2.5	122	81	4	344	38	30	11	20	1.87
4338421--4338687	129	2.1	126	83	3	320	36	30	11	22	1.89
4344637--4344666	7	4.1	7	95	4	51	73	0	0	26	0.84
4361009--4361185	72	2.4	73	78	1	176	29	10	13	46	1.77
4362294--4362331	20	2.0	20	84	5	51	39	13	2	44	1.57
4366260--4366354	29	3.7	25	72	19	72	51	9	14	24	1.72
4366392--4366437	24	2.0	23	91	4	74	30	2	23	43	1.66
4367960--4368522	304	1.9	304	85	1	788	38	12	12	37	1.80
4368602--4368768	61	2.7	60	80	9	176	37	14	16	31	1.89
4368618--4368779	62	2.6	60	80	6	164	38	16	13	30	1.88
4368895--4369041	64	2.3	64	81	3	156	36	15	12	35	1.86
4370056--4370096	21	2.0	21	85	9	57	73	0	2	24	0.96
4373675--4373810	62	2.2	61	81	12	154	41	15	12	30	1.84
4376203--4376261	30	2.0	30	96	0	109	37	0	32	30	1.58
4386897--4386964	20	3.3	20	83	2	91	36	17	13	32	1.89
4391787--4391833	20	2.3	20	92	7	78	46	0	0	53	1.00
4391858--4391885	4	7.0	4	100	0	56	50	0	0	50	1.00
4392543--4392584	16	2.6	16	78	14	50	61	0	2	35	1.09
4396445--4396498	19	2.9	18	78	8	54	11	0	38	50	1.38
4396530--4396785	26	10.2	25	77	11	213	17	1	38	42	1.58
4396573--4396774	51	4.1	49	72	17	179	16	0	40	42	1.55
4396574--4396747	96	1.8	96	87	9	266	16	0	40	42	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4396666--4396785	51	2.3	52	91	5	199	12	0	41	45	1.48
4397626--4397652	9	3.0	9	100	0	54	22	11	0	66	1.22
4398090--4398365	142	1.9	142	80	8	312	43	13	14	28	1.84
4404683--4404729	21	2.2	21	84	0	58	23	14	25	36	1.93
4404814--4404906	31	3.0	31	71	13	84	38	13	5	41	1.68
4404921--4404988	35	2.0	34	82	8	84	38	5	2	52	1.41
4404991--4405030	21	1.9	21	85	10	55	42	2	0	55	1.13
4405448--4405499	20	2.6	19	82	14	61	57	3	5	32	1.40
4410176--4410212	3	12.3	3	100	0	74	67	0	0	32	0.91
4415393--4415517	63	2.0	63	96	3	234	32	14	12	41	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93