genome.fa.s190.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  72  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10401471--10402345	207	4.2	207	78	7	656	43	17	11	26	1.84
10401998--10402344	40	8.5	39	77	10	170	44	18	11	25	1.83
10402807--10402907	22	4.6	22	88	1	150	40	18	6	33	1.78
10402807--10403059	44	6.1	43	76	13	262	40	16	7	34	1.78
10402872--10402938	32	2.1	32	88	0	98	40	19	8	31	1.82
10402904--10403059	22	7.2	22	86	2	217	40	16	8	34	1.79
10402850--10402961	54	2.1	54	86	0	152	40	16	8	33	1.80
10402828--10403046	76	3.0	75	79	12	244	40	17	8	33	1.80
10404236--10404329	22	4.2	21	72	22	77	5	14	0	79	0.89
10404236--10404329	11	8.6	11	73	9	68	5	14	0	79	0.89
10404243--10404284	12	3.6	12	84	15	52	4	11	0	83	0.79
10404247--10404317	31	2.4	28	86	11	97	5	12	0	81	0.85
10408354--10408475	61	2.0	63	88	3	185	25	11	7	55	1.61
10408543--10408986	170	2.6	169	85	7	587	37	11	8	42	1.71
10409012--10409045	14	2.5	13	86	9	50	14	5	0	79	0.91
10410115--10410147	8	3.7	9	88	11	50	18	3	0	78	0.87
10415869--10416139	135	2.0	135	100	0	542	28	11	14	46	1.78
10417764--10417807	3	15.0	3	90	4	72	31	0	0	68	0.90
10417766--10417800	17	2.1	17	100	0	70	34	0	0	65	0.93
10417765--10417814	9	5.4	9	81	11	57	28	0	0	72	0.86
10417764--10417801	20	1.9	20	100	0	76	34	0	0	65	0.93
10417950--10417996	16	2.8	17	83	6	60	21	4	2	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10417989--10418014	13	2.0	13	100	0	52	46	0	0	53	1.00
10418817--10418936	49	2.5	46	81	10	134	19	6	37	36	1.78
10419071--10419172	46	2.2	46	94	0	186	18	5	51	23	1.67
10420469--10420520	22	2.3	22	77	9	61	76	7	9	5	1.14
10421451--10421480	10	3.0	10	90	0	51	26	0	0	73	0.84
10421451--10421513	21	3.0	20	77	9	63	28	0	1	69	0.97
10427627--10427667	21	1.9	22	85	5	57	53	4	21	19	1.63
10427888--10427977	35	2.6	35	83	3	119	37	14	10	37	1.80
10428363--10428471	42	2.6	42	79	5	121	23	14	22	39	1.91
10428543--10428695	42	3.6	42	74	1	135	24	13	20	41	1.89
10428540--10428695	85	1.8	84	84	1	213	24	13	20	41	1.88
10428663--10429184	99	5.3	99	82	3	575	23	14	21	40	1.89
10429342--10429748	99	4.0	104	79	6	270	30	11	20	38	1.87
10429345--10429755	51	8.2	50	78	6	337	29	11	19	39	1.87
10429345--10429752	49	8.1	50	78	8	328	29	11	19	39	1.86
10429321--10429755	100	4.3	101	78	9	415	29	11	19	38	1.87
10431132--10431185	21	2.6	21	81	0	63	27	0	1	70	0.98
10432930--10432989	3	20.0	3	100	0	120	33	0	0	66	0.92
10434860--10434921	25	2.5	25	76	5	63	62	9	1	25	1.35
10437387--10437421	7	5.0	7	100	0	70	42	0	0	57	0.99
10437472--10437503	14	2.2	15	94	5	57	0	31	3	65	1.08
10439728--10439753	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10440293--10440361	31	2.2	31	89	0	102	46	0	5	47	1.26
10440286--10440391	31	3.7	29	78	8	92	39	0	5	54	1.24
10441213--10441244	15	2.1	16	88	11	50	40	0	3	56	1.15
10443210--10443271	7	8.9	7	76	13	65	82	12	1	3	0.87
10443697--10443746	16	3.1	16	78	18	50	80	12	0	8	0.92
10448581--10448621	21	2.0	21	95	0	73	36	24	19	19	1.95
10453406--10453559	56	3.0	50	80	11	184	26	11	24	37	1.90
10453415--10453610	50	3.8	50	76	14	157	26	11	23	38	1.89
10455170--10455212	18	2.4	18	84	7	52	62	0	6	30	1.21
10456313--10456343	16	1.9	16	93	0	53	45	6	0	48	1.28
10457266--10457294	13	2.2	13	100	0	58	20	0	0	79	0.74
10457402--10457438	8	4.6	8	93	0	65	75	13	8	2	1.13
10464529--10464567	20	1.9	21	84	5	53	53	5	2	38	1.37
10476044--10476102	29	2.1	28	96	3	109	33	8	10	47	1.68
10476219--10476261	21	2.0	22	82	13	54	60	0	6	32	1.23
10476680--10476713	15	2.3	15	89	0	50	20	23	2	52	1.60
10477836--10477945	51	2.2	51	91	0	175	26	20	7	45	1.77
10483279--10483325	15	3.1	15	82	11	53	23	0	10	65	1.23
10483958--10484035	21	3.7	21	87	0	93	21	6	33	38	1.79
10484785--10484813	14	2.0	15	93	6	51	51	0	0	48	1.00
10486109--10486265	78	2.0	78	96	0	287	24	16	30	28	1.96
10491599--10491664	34	1.9	34	87	6	98	42	15	1	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10491650--10491769	34	3.5	35	77	6	120	37	13	13	35	1.84
10491702--10491750	18	2.9	17	74	25	50	40	14	16	28	1.87
10494522--10494571	25	2.1	22	82	10	55	42	8	4	46	1.52
10501302--10501584	107	2.6	107	83	4	349	43	7	19	29	1.78
10507024--10507055	6	5.5	6	96	3	57	12	0	0	87	0.54
10510978--10511023	24	2.0	24	86	4	67	52	4	2	41	1.33
10515098--10515126	14	2.1	14	93	6	51	41	0	0	58	0.98
10516782--10516833	21	2.4	21	96	3	95	53	0	0	46	1.00
10518438--10518520	41	2.1	39	84	8	105	43	0	3	53	1.18
10518662--10518752	4	23.0	4	69	22	50	29	2	1	67	1.10
10518644--10518730	20	4.3	20	75	16	74	26	2	1	70	1.07
10518683--10518759	20	3.7	20	71	20	59	32	1	0	66	1.00
10518689--10518764	23	3.4	22	71	14	66	34	1	0	64	1.02
10519322--10519390	30	2.3	30	78	7	79	50	5	8	34	1.57
10520883--10520953	11	6.7	11	72	15	51	40	2	4	52	1.36
10520889--10520948	14	4.4	14	72	4	50	43	3	5	48	1.41
10525255--10525325	33	2.2	33	86	0	97	42	0	11	46	1.39
10525877--10525988	52	2.2	52	83	3	145	43	7	20	28	1.78
10525997--10526045	25	2.0	25	91	0	80	26	6	22	44	1.76
10526573--10526627	25	2.2	25	80	6	67	40	7	30	21	1.81
10526979--10527135	52	3.0	52	87	0	206	41	8	24	26	1.83
10527116--10527164	25	2.0	25	91	0	80	28	8	20	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10529328--10529381	28	1.9	28	96	0	99	42	12	9	35	1.75
10531536--10531629	16	5.5	16	73	12	64	45	0	4	50	1.21
10531536--10531609	33	2.2	32	83	4	85	45	0	2	51	1.15
10531568--10531628	17	3.5	16	80	14	59	49	0	4	45	1.23
10531577--10531632	20	3.0	19	85	15	73	48	0	8	42	1.34
10532250--10532336	26	3.4	25	71	22	74	45	0	0	54	1.00
10532250--10532336	27	3.4	24	73	20	79	45	0	0	54	1.00
10532603--10532718	59	2.0	59	94	0	205	46	1	2	49	1.25
10532830--10532869	20	1.9	22	90	10	66	32	0	0	67	0.91
10538487--10538521	2	17.5	2	100	0	70	48	0	51	0	1.00
10540958--10541003	22	2.1	22	88	8	67	15	4	6	73	1.19
10552038--10552104	35	1.9	35	93	6	118	25	8	13	52	1.69
10553806--10553835	15	1.9	16	93	6	53	36	0	3	60	1.14
10558318--10558351	17	1.9	18	88	5	52	8	26	32	32	1.87
10558847--10558971	18	6.9	18	71	13	87	28	4	34	32	1.76
10558846--10558947	33	3.0	33	78	7	123	28	3	32	35	1.76
10559315--10559351	6	6.2	6	90	0	56	29	48	0	21	1.50
10559317--10559352	18	2.0	18	94	0	63	27	47	0	25	1.52
10562765--10562813	25	1.9	26	91	4	82	40	10	2	46	1.49
10563037--10563074	20	2.0	20	89	5	60	60	5	0	34	1.19
10563310--10563402	39	2.4	40	92	3	154	22	64	0	12	1.27
10563339--10563417	19	4.1	19	71	15	63	22	64	0	12	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10564994--10565039	22	2.2	21	88	7	67	43	2	2	52	1.25
10565008--10565077	34	2.0	34	81	13	81	32	7	2	57	1.41
10565528--10565570	22	2.0	22	86	9	61	18	2	6	72	1.19
10565937--10565980	16	2.8	17	83	10	58	38	0	0	61	0.96
10566036--10566074	14	2.9	14	81	18	55	76	2	0	20	0.90
10566839--10566889	23	2.2	22	80	10	57	31	13	11	43	1.80
10572915--10572949	16	2.1	18	89	10	56	40	2	5	51	1.40
10574212--10574258	15	3.0	15	87	9	67	42	0	0	57	0.98
10574484--10574545	22	2.8	22	92	7	99	29	14	27	29	1.95
10574605--10574647	22	2.0	22	90	0	68	30	11	23	34	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93