genome.fa.s190.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  85  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13523629--13523695	31	2.2	31	83	2	82	47	2	8	40	1.50
13525574--13525618	21	2.1	21	84	8	56	48	0	4	46	1.22
13526285--13526314	2	15.0	2	100	0	60	50	0	50	0	1.00
13536961--13536989	9	3.2	9	100	0	58	10	10	68	10	1.39
13538313--13538355	15	3.1	14	83	9	61	55	0	0	44	0.99
13539041--13539091	26	2.0	26	88	7	77	62	0	0	37	0.95
13546949--13546979	9	3.3	9	95	4	53	67	0	0	32	0.91
13551881--13551922	22	1.9	22	95	0	75	45	0	9	45	1.36
13563163--13563235	32	2.2	32	82	2	83	49	1	4	45	1.29
13563759--13563816	29	2.0	29	96	0	107	29	20	15	34	1.94
13565392--13565421	7	4.4	7	95	4	53	23	30	16	30	1.96
13577784--13577840	17	3.6	17	71	24	52	56	0	0	43	0.99
13577880--13577937	27	2.2	26	84	9	73	39	3	0	56	1.16
13578978--13579044	28	2.4	28	73	19	75	53	1	1	43	1.19
13580102--13580134	16	2.0	17	88	5	50	72	0	6	21	1.05
13582884--13582929	18	2.6	19	86	10	62	15	2	2	80	0.91
13583030--13583073	23	1.9	23	81	9	54	59	2	4	34	1.30
13583171--13583204	10	3.5	10	88	8	52	79	0	5	14	0.91
13583532--13583579	17	2.8	17	76	17	55	70	2	6	20	1.19
13585806--13585851	24	2.0	24	87	8	69	65	6	0	28	1.17
13589414--13589492	30	2.6	30	82	7	97	20	2	26	50	1.61
13589469--13589501	13	2.4	14	95	5	59	15	0	30	54	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13589627--13589654	3	9.3	3	100	0	56	32	0	0	67	0.91
13589595--13589648	28	2.0	27	82	10	65	37	0	1	61	1.07
13591187--13591224	15	2.5	15	95	0	67	10	0	2	86	0.66
13591186--13591233	24	2.0	24	83	4	60	16	0	2	81	0.79
13591531--13591684	37	4.2	37	75	11	129	52	18	15	13	1.74
13591564--13591684	37	3.3	37	79	10	140	53	18	14	13	1.72
13591841--13591986	22	6.6	22	78	6	107	30	12	23	32	1.92
13591885--13591986	44	2.3	44	83	3	125	30	13	24	31	1.94
13592095--13592319	96	2.4	97	81	4	269	33	17	16	32	1.92
13592827--13592888	25	2.5	25	94	0	106	38	12	20	27	1.90
13601032--13601109	31	2.6	30	82	7	88	19	2	32	46	1.63
13601032--13601175	29	4.9	29	71	13	96	22	2	27	47	1.62
13601458--13601503	25	2.0	22	87	12	65	21	4	10	63	1.44
13601588--13601651	23	2.9	21	73	15	58	75	4	0	20	0.99
13601610--13601666	8	7.0	8	78	9	62	78	3	0	17	0.88
13604472--13604568	34	2.9	34	87	1	133	34	12	16	37	1.86
13610699--13610843	17	8.2	17	68	20	68	31	0	4	63	1.20
13610700--13610842	3	43.7	3	69	22	53	31	0	4	62	1.21
13610713--13610836	31	3.8	32	69	21	85	32	0	4	62	1.22
13611965--13612189	120	1.8	121	90	3	362	46	7	12	33	1.69
13611962--13612189	57	3.7	63	77	16	228	46	7	11	33	1.70
13612221--13612248	6	4.7	6	100	0	56	14	0	14	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13614508--13615981	186	7.9	186	83	3	1630	34	14	10	40	1.80
13614509--13615983	558	2.6	554	85	3	1978	34	14	10	40	1.79
13616547--13616612	25	2.6	24	83	9	78	16	3	37	42	1.64
13619752--13619821	35	2.0	35	88	0	104	35	18	12	32	1.89
13622519--13622623	52	2.0	52	85	3	140	29	18	8	43	1.79
13622644--13622690	22	2.1	22	84	0	58	44	25	0	29	1.54
13624196--13624233	2	19.0	2	100	0	76	50	0	0	50	1.00
13624233--13624278	2	23.0	2	100	0	92	50	0	50	0	1.00
13636672--13636712	13	3.2	12	80	12	55	51	9	4	34	1.56
13642481--13642514	16	2.1	17	88	5	52	61	2	0	35	1.11
13642469--13642579	43	2.6	41	81	13	118	58	1	0	39	1.09
13642498--13642536	19	2.0	20	90	5	62	58	0	0	41	0.98
13642484--13642574	43	2.0	46	85	6	125	60	1	0	38	1.04
13642485--13642551	16	4.5	15	70	21	52	61	1	0	37	1.05
13643181--13643245	21	3.0	21	77	18	69	56	0	0	43	0.99
13662347--13662475	51	2.6	49	75	17	120	48	2	1	48	1.24
13668078--13668133	28	2.0	28	100	0	112	32	17	7	42	1.77
13691482--13691515	12	2.8	12	81	0	50	17	41	11	29	1.85
13692972--13693000	14	2.0	15	93	6	51	58	0	0	41	0.98
13702718--13702762	18	2.6	17	82	10	56	60	6	2	31	1.35
13702728--13702761	17	1.9	18	94	5	61	52	8	0	38	1.33
13703919--13703967	15	3.3	15	80	11	57	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13703919--13703968	7	6.9	7	82	8	55	58	0	0	42	0.98
13704134--13704217	43	2.0	43	83	4	107	27	29	14	28	1.95
13715689--13715729	21	1.9	22	85	5	57	65	0	0	34	0.93
13715746--13715779	14	2.5	13	90	4	50	55	0	0	44	0.99
13716533--13716610	26	2.8	27	83	9	95	48	1	0	50	1.09
13716757--13716796	21	1.9	21	84	0	53	40	10	2	47	1.50
13718058--13718121	31	2.2	30	88	8	96	37	12	23	26	1.90
13718344--13718386	22	1.9	23	85	4	61	9	32	0	58	1.30
13731138--13731234	46	2.2	46	92	3	162	27	8	5	58	1.48
13732818--13732900	40	2.0	41	83	2	105	49	15	9	25	1.75
13732919--13733124	44	4.8	44	80	4	195	43	13	14	28	1.83
13732919--13733121	87	2.3	87	80	3	219	43	13	14	28	1.83
13741979--13742008	4	7.5	4	92	0	51	70	0	0	30	0.88
13756534--13756617	34	2.5	34	90	0	141	26	14	11	47	1.78
13761233--13763052	161	11.3	159	79	5	1493	33	9	14	43	1.77
13761233--13763040	482	3.7	482	82	3	1854	33	9	14	43	1.77
13771830--13771864	15	2.4	14	86	9	52	25	0	2	71	1.00
13776766--13776827	26	2.3	26	83	8	72	48	0	4	46	1.23
13777332--13777367	17	2.1	17	89	0	54	16	0	5	77	0.94
13779952--13779985	16	2.1	17	88	5	52	58	0	0	41	0.98
13782714--13782739	2	13.0	2	100	0	52	0	50	0	50	1.00
13783753--13783780	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13783966--13784001	2	18.0	2	88	0	54	55	0	0	44	0.99
13787205--13787287	41	2.0	41	95	0	148	30	15	18	36	1.92
13790159--13790197	19	2.0	21	85	10	55	33	0	0	66	0.92
13790213--13790262	21	2.6	19	87	9	66	50	0	0	50	1.00
13790214--13790263	19	2.6	20	81	18	70	48	0	0	52	1.00
13790213--13790253	18	2.3	18	91	8	66	53	0	0	46	1.00
13790214--13790273	21	3.0	19	77	15	59	48	0	0	51	1.00
13809413--13809442	15	2.0	15	93	0	51	36	13	0	50	1.42
13815064--13815123	13	4.9	12	76	8	50	43	3	3	50	1.35
13815064--13815128	18	3.6	17	74	11	67	44	3	3	49	1.33
13822195--13822240	16	2.9	15	81	9	56	30	0	0	69	0.89
13822326--13822367	19	2.3	19	87	4	59	50	0	0	50	1.00
13833391--13833428	12	3.1	12	96	3	67	34	7	34	23	1.84
13837981--13838019	19	2.1	19	100	0	78	10	35	15	38	1.81
13838520--13838703	94	2.0	94	95	0	332	32	17	16	34	1.92
13842503--13842544	21	2.0	20	90	4	66	26	2	0	71	0.98
13842503--13842547	19	2.2	21	88	7	67	28	2	0	68	1.01
13842767--13842795	5	5.8	5	100	0	58	20	20	0	58	1.39
13845328--13845352	3	8.3	3	100	0	50	36	0	0	64	0.94
13845506--13845540	12	2.8	12	86	4	52	77	0	8	14	0.99
13850254--13850338	30	2.7	32	73	23	81	37	0	3	58	1.15
13850601--13850626	2	13.0	2	100	0	52	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13852255--13852317	24	2.6	24	80	12	76	39	3	3	53	1.33
13852281--13852348	33	2.1	33	83	5	84	36	1	1	60	1.15
13852297--13852349	15	3.3	15	78	14	61	39	0	0	60	0.97
13853051--13853093	15	2.6	17	79	20	56	48	0	0	51	1.00
13853834--13853903	33	2.2	31	80	9	79	57	0	0	42	0.99
13855045--13855080	13	2.8	13	86	0	54	47	2	2	47	1.31
13855651--13855713	18	3.6	18	69	23	53	61	3	0	34	1.12
13855699--13855755	26	2.1	27	84	9	73	59	1	3	35	1.25
13865192--13865234	21	2.0	21	86	8	61	53	2	0	44	1.13
13866251--13866297	24	2.0	24	91	0	76	36	23	6	34	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93