genome.fa.s190.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  74  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10719657--10719691	3	11.7	3	100	0	70	68	0	0	31	0.90
10727809--10727914	20	5.3	20	90	0	149	53	11	6	28	1.61
10728211--10728261	20	2.5	20	84	9	59	76	3	11	7	1.13
10728225--10728262	20	1.9	20	94	0	67	73	5	7	13	1.22
10728252--10728286	18	1.9	18	94	0	61	77	5	14	2	1.07
10729751--10729872	15	8.6	15	70	18	82	55	0	0	42	1.11
10729756--10729822	8	8.2	8	75	15	66	52	0	0	47	1.00
10729709--10729859	23	6.4	24	68	22	56	55	0	0	43	1.09
10729709--10729864	78	1.9	82	83	11	207	55	1	0	42	1.12
10729844--10729885	18	2.2	20	87	8	61	61	4	0	33	1.17
10729768--10729885	41	2.9	41	79	3	103	56	1	0	40	1.15
10729902--10729989	19	4.9	18	68	17	58	45	2	0	52	1.13
10729899--10729976	18	4.4	17	72	13	59	41	2	0	56	1.13
10730046--10730074	15	1.9	15	100	0	58	72	0	0	27	0.85
10735072--10735189	9	11.8	10	72	17	77	23	3	1	71	1.11
10735078--10735192	3	38.3	3	72	16	69	24	3	1	70	1.12
10735964--10736031	8	8.2	8	71	12	57	16	1	4	77	0.99
10737244--10737287	22	2.0	22	81	0	52	27	15	11	45	1.81
10741126--10741178	26	2.0	26	100	0	106	49	3	15	32	1.62
10749623--10749657	15	2.2	16	90	5	54	40	5	22	31	1.78
10757636--10757720	29	3.1	29	83	13	124	23	24	14	37	1.92
10757636--10757726	25	3.6	25	86	8	105	23	25	13	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10768257--10768315	2	30.0	2	77	3	57	40	1	8	49	1.43
10768257--10768318	8	7.9	8	90	3	90	40	1	9	48	1.46
10768934--10769094	82	2.0	82	92	0	268	46	19	16	16	1.84
10770286--10770322	2	18.5	2	94	0	65	48	2	48	0	1.15
10775672--10775736	26	2.5	26	97	0	121	21	32	6	40	1.78
10781983--10782047	29	2.2	29	97	0	121	23	16	3	56	1.54
10790773--10790814	16	2.6	16	85	7	59	40	9	11	38	1.75
10790946--10791013	16	4.3	15	77	15	57	51	2	4	41	1.37
10790947--10790998	17	3.1	17	80	2	61	53	1	5	38	1.36
10792403--10792432	4	7.5	4	100	0	60	23	0	0	76	0.78
10792393--10792444	16	3.0	16	75	20	50	25	0	0	75	0.81
10793230--10793281	21	2.4	21	87	6	68	5	3	13	76	1.10
10793403--10793444	17	2.5	17	84	3	59	57	4	0	38	1.20
10793347--10793564	75	2.9	75	85	6	257	50	5	8	35	1.56
10793425--10793843	60	7.0	57	72	16	282	48	6	10	33	1.65
10793569--10793799	60	3.9	60	80	4	288	50	6	11	32	1.63
10793566--10793798	119	2.0	119	89	0	358	51	6	11	31	1.62
10797945--10797989	13	3.4	13	84	6	63	82	0	11	6	0.84
10797987--10798019	15	2.2	15	89	10	50	63	0	27	9	1.24
10799407--10799596	42	4.6	43	83	7	234	24	13	19	42	1.87
10799407--10799801	44	9.4	41	74	14	229	24	12	19	43	1.85
10799434--10799832	42	9.4	41	74	13	201	23	13	20	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10800035--10800061	4	6.8	4	100	0	54	25	0	0	74	0.83
10800374--10800433	19	3.5	19	68	25	60	18	8	21	51	1.72
10800874--10800951	8	9.6	8	74	16	63	10	1	12	75	1.10
10800873--10800951	17	4.8	17	74	13	76	10	1	12	75	1.09
10801015--10801213	74	2.7	71	76	9	213	49	6	9	35	1.59
10801140--10801495	59	6.1	60	77	6	326	47	7	10	34	1.66
10801140--10801449	120	2.6	119	86	5	416	49	6	10	33	1.63
10803107--10803276	86	2.0	88	82	9	215	40	18	4	36	1.70
10802627--10804219	585	2.7	583	79	5	1560	38	17	6	38	1.76
10804766--10804815	26	2.0	25	84	4	64	42	18	0	40	1.50
10807704--10807762	3	21.0	3	80	13	72	28	1	0	69	0.98
10807704--10807762	8	7.0	9	79	12	72	28	1	0	69	0.98
10807705--10807763	11	5.0	12	80	17	70	27	1	0	71	0.96
10808206--10808259	20	2.6	23	80	16	64	70	5	0	24	1.08
10808178--10808258	11	7.8	10	70	20	51	70	6	1	22	1.17
10808216--10808277	26	2.4	25	84	5	79	74	8	0	17	1.06
10809462--10809562	34	3.0	34	85	0	139	38	18	16	25	1.92
10809687--10809888	40	5.0	40	77	1	170	42	16	11	29	1.84
10815985--10816123	69	2.0	69	86	5	192	40	20	7	31	1.81
10821436--10821465	13	2.3	13	94	0	51	23	0	10	66	1.21
10821445--10821500	13	4.2	14	82	17	66	28	1	1	67	1.10
10821445--10821502	7	8.1	7	75	17	57	29	1	1	67	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10822098--10822138	21	2.0	21	86	13	59	70	12	0	17	1.16
10822655--10822701	23	2.1	23	84	7	62	19	4	8	68	1.33
10823556--10823636	25	3.5	22	77	11	81	51	0	2	45	1.14
10823625--10823741	21	5.5	21	68	22	64	49	0	0	49	1.06
10823613--10823676	17	3.7	17	75	4	56	51	0	0	48	1.00
10825973--10826013	20	2.1	19	86	4	55	0	14	29	56	1.39
10838991--10839034	18	2.5	17	78	10	52	22	59	9	9	1.56
10839203--10839240	20	1.9	20	84	10	51	71	10	2	15	1.25
10841425--10841523	49	2.0	49	92	0	162	37	21	12	29	1.89
10847463--10847503	14	2.9	14	81	0	55	56	21	14	7	1.63
10847463--10847503	21	2.0	21	90	0	64	56	21	14	7	1.63
10848666--10848720	29	1.9	29	85	3	76	49	5	1	43	1.36
10849190--10849236	20	2.4	19	80	19	53	65	4	10	19	1.39
10849669--10849698	2	15.0	2	100	0	60	50	0	0	50	1.00
10853513--10853591	15	5.3	15	73	13	58	54	0	1	44	1.08
10853523--10853601	15	5.2	16	73	8	60	53	0	1	45	1.08
10853499--10853610	45	2.6	43	75	18	101	52	0	0	46	1.06
10854124--10854148	5	5.0	5	100	0	50	20	0	0	80	0.72
10854612--10854647	2	18.0	2	100	0	72	0	50	0	50	1.00
10860354--10860416	23	2.6	24	75	9	67	41	1	1	55	1.19
10860918--10860998	28	2.7	30	75	11	78	46	6	6	40	1.54
10861260--10861358	51	1.9	51	85	4	137	42	7	3	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10862700--10862742	2	21.5	2	100	0	86	51	0	0	48	1.00
10863918--10863962	18	2.5	19	85	10	67	44	0	0	55	0.99
10864138--10864185	13	3.5	13	75	13	51	43	0	0	56	0.99
10864268--10864305	19	2.0	19	94	0	67	50	0	0	50	1.00
10864352--10864411	26	2.3	26	91	8	97	50	1	0	48	1.11
10865305--10865330	13	2.0	13	100	0	52	38	0	0	61	0.96
10865710--10865771	16	4.1	16	76	19	62	48	0	0	51	1.00
10865741--10865793	23	2.6	20	78	21	65	49	0	0	50	1.00
10865715--10865751	8	4.6	8	86	0	56	43	0	0	56	0.99
10865747--10865789	23	2.0	23	90	9	72	51	0	0	48	1.00
10873477--10873501	12	2.1	12	100	0	50	44	8	0	48	1.32
10874051--10874132	11	7.9	10	71	16	51	43	1	3	51	1.27
10874042--10874123	32	2.6	33	84	7	100	43	0	3	52	1.18
10874098--10874154	19	3.3	18	79	16	59	36	1	1	59	1.18
10874108--10874155	9	5.7	9	76	18	50	33	2	0	64	1.05
10874212--10874255	17	2.6	16	79	10	52	63	0	2	34	1.07
10874212--10874251	19	2.1	19	85	0	53	65	0	2	32	1.06
10874212--10874256	15	2.6	18	80	13	51	64	0	2	33	1.06
10874272--10874330	12	4.9	12	70	15	50	42	1	1	54	1.20
10880323--10880390	35	1.9	35	81	0	82	33	7	17	41	1.77
10889228--10889275	26	2.0	25	84	12	64	41	12	8	37	1.73
10890627--10890758	71	1.9	71	86	0	192	46	8	6	39	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10891618--10891658	20	2.0	21	85	4	57	43	4	2	48	1.37
10892590--10892640	19	2.8	18	82	11	59	37	0	1	60	1.08
10892595--10892642	18	2.6	18	83	3	60	37	0	2	60	1.09
10892773--10892816	22	2.0	23	82	13	56	50	4	0	45	1.22
10894967--10895004	2	19.0	2	100	0	76	50	0	0	50	1.00
10895704--10895888	101	1.8	99	87	4	273	45	6	3	44	1.47
10897147--10897176	12	2.4	12	94	5	51	83	10	6	0	0.81
10898357--10898404	3	16.3	3	83	12	64	66	2	0	31	1.03
10898359--10898404	16	2.6	17	83	13	58	67	2	0	30	1.03
10898357--10898406	19	2.6	20	84	6	68	68	2	0	30	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93