genome.fa.s190.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  73  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10574510--10574756	109	2.3	110	80	0	280	41	14	17	26	1.88
10574729--10574778	22	2.3	22	92	0	82	32	20	20	28	1.97
10574845--10574888	22	2.0	21	82	4	52	40	18	11	29	1.85
10574640--10574888	132	1.9	131	83	2	320	42	16	15	24	1.87
10574734--10574981	110	2.2	110	82	4	286	40	16	18	24	1.91
10575107--10575306	88	2.3	87	83	0	247	41	20	17	21	1.91
10575426--10575534	41	2.7	41	84	9	152	32	13	19	34	1.91
10575868--10575897	15	2.0	15	93	0	51	36	13	30	20	1.90
10576295--10576338	22	2.0	22	100	0	88	36	22	4	36	1.75
10577252--10577291	13	3.2	12	85	7	53	2	12	0	85	0.71
10581918--10581956	21	1.9	20	89	5	60	43	5	10	41	1.61
10584479--10584509	3	10.3	3	92	0	53	61	0	0	38	0.96
10584475--10584507	15	2.2	15	100	0	66	60	0	0	39	0.97
10584498--10584543	21	2.1	23	88	8	69	69	0	0	30	0.89
10584495--10584543	24	2.0	24	88	0	71	69	0	0	30	0.89
10584536--10584567	16	2.0	16	93	0	55	87	9	3	0	0.64
10585989--10586149	16	10.5	16	73	9	104	46	33	1	18	1.59
10586075--10586134	30	2.0	30	87	3	86	46	33	0	20	1.51
10586028--10586152	44	2.7	45	76	13	130	48	31	1	18	1.57
10586075--10586145	30	2.4	29	81	9	81	49	29	0	21	1.50
10586097--10586206	51	2.2	50	83	6	132	48	35	0	16	1.47
10586140--10586174	14	2.4	15	90	4	54	51	37	0	11	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10586142--10586192	14	3.4	15	84	13	52	49	35	0	15	1.45
10589371--10589402	14	2.4	14	90	10	50	3	3	6	87	0.73
10589707--10589749	14	2.9	15	79	10	52	2	13	2	81	0.89
10589754--10589794	21	1.9	22	90	5	66	41	0	2	56	1.13
10599150--10599194	22	2.2	20	84	8	54	55	4	4	35	1.40
10601010--10601047	2	19.0	2	100	0	76	50	0	50	0	1.00
10604551--10604598	24	2.0	24	100	0	96	29	25	12	33	1.92
10606006--10606039	17	2.0	17	88	0	50	14	14	20	50	1.78
10619780--10619806	2	13.5	2	100	0	54	0	48	0	51	1.00
10621157--10621195	20	1.9	20	84	5	51	46	2	0	51	1.14
10621485--10621576	30	3.1	30	82	6	98	43	15	1	40	1.54
10622386--10622437	14	3.7	14	75	10	52	48	0	0	51	1.00
10622386--10622437	21	2.5	22	87	6	72	48	0	0	51	1.00
10625583--10625617	18	1.9	18	88	0	52	62	17	5	14	1.49
10626360--10626393	2	17.0	2	100	0	68	0	50	0	50	1.00
10631815--10631871	29	2.0	29	100	0	114	31	24	10	33	1.89
10643662--10643691	3	10.0	3	92	0	51	36	0	30	33	1.58
10644966--10645009	17	2.6	17	78	3	54	45	0	2	52	1.13
10645357--10645422	20	3.2	20	71	16	55	43	1	0	54	1.09
10646156--10646203	24	2.0	25	84	8	64	20	4	6	68	1.28
10646522--10646552	13	2.4	13	94	0	53	90	0	9	0	0.46
10647801--10647843	14	3.2	13	87	9	59	65	2	9	23	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10647807--10647859	27	2.0	27	85	14	74	66	3	7	22	1.34
10647807--10647843	13	2.7	14	91	4	58	64	2	10	21	1.37
10647871--10647931	29	2.0	29	87	6	86	75	3	11	9	1.16
10647870--10647922	24	2.2	24	83	10	63	79	1	9	9	1.02
10647834--10647923	29	2.8	30	80	15	94	75	2	7	14	1.12
10647973--10648003	7	4.4	7	91	0	53	83	3	0	12	0.75
10648211--10648300	37	2.5	37	94	1	155	43	11	20	25	1.84
10648425--10648518	32	2.9	32	77	0	98	44	10	24	20	1.83
10648667--10648796	63	2.0	64	82	4	156	43	9	24	23	1.83
10649054--10649086	16	2.1	16	94	0	57	21	6	6	66	1.35
10651420--10651463	20	2.2	20	95	0	79	36	6	34	22	1.81
10655586--10655693	46	2.4	46	83	7	141	37	3	16	42	1.66
10655800--10655848	17	2.9	17	84	0	62	42	22	4	30	1.72
10655862--10655971	34	3.2	33	77	13	98	30	10	16	41	1.83
10655889--10655971	16	4.9	17	68	16	57	30	8	16	44	1.78
10656262--10656314	17	3.1	17	76	13	54	32	15	15	37	1.88
10656252--10656301	17	2.8	18	77	14	59	34	14	14	38	1.85
10656246--10656349	35	2.9	35	78	5	102	33	14	14	37	1.87
10659249--10659363	57	2.0	57	93	0	194	43	16	11	28	1.82
10667562--10667687	44	2.9	44	74	11	123	26	12	15	44	1.83
10667856--10667968	42	2.7	42	81	6	122	61	5	0	31	1.24
10667934--10667965	14	2.4	14	94	5	57	68	6	0	25	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10667934--10667972	13	2.7	14	85	14	53	66	5	0	28	1.12
10668594--10668633	14	2.9	14	96	0	71	22	42	5	30	1.75
10669005--10669060	23	2.4	23	93	0	94	42	46	0	10	1.38
10671231--10671302	33	2.3	31	77	15	78	30	0	8	61	1.26
10677351--10677384	17	1.9	18	88	5	52	85	8	5	0	0.75
10678078--10678237	83	1.9	83	83	2	205	36	19	10	33	1.85
10678856--10678894	8	4.9	8	81	12	53	84	0	12	2	0.72
10679185--10679238	22	2.5	22	87	0	72	25	16	22	35	1.95
10679313--10679370	22	2.6	22	80	0	71	37	20	10	31	1.86
10679117--10679506	129	3.0	129	79	5	450	35	15	13	34	1.88
10679335--10679651	173	1.8	173	88	2	485	35	17	13	34	1.89
10679615--10679672	22	2.6	22	100	0	116	24	24	20	31	1.98
10680382--10680476	43	2.2	45	86	5	142	64	3	1	31	1.16
10680382--10680487	43	2.5	42	84	4	113	65	3	0	30	1.17
10680459--10680492	16	2.1	16	94	0	59	73	2	0	23	0.97
10683545--10683755	43	4.9	43	80	3	208	26	16	13	43	1.85
10684459--10684516	25	2.4	24	86	11	82	63	6	15	13	1.49
10684591--10684624	4	8.2	4	87	6	50	26	0	0	73	0.83
10684591--10684624	17	2.0	17	94	0	59	26	0	0	73	0.83
10684581--10684621	21	1.9	22	90	5	66	26	0	0	73	0.84
10685624--10685710	40	2.2	40	85	2	111	42	17	8	32	1.78
10685644--10685720	40	1.9	40	83	0	100	41	19	5	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10690613--10690638	12	2.2	12	100	0	52	38	0	0	61	0.96
10690670--10690782	53	2.1	53	85	6	149	27	7	7	56	1.56
10692857--10692971	20	5.8	20	79	2	99	49	10	7	32	1.66
10692857--10692958	40	2.5	40	82	3	116	49	10	8	31	1.68
10693209--10693255	20	2.3	20	80	16	53	74	0	6	19	1.03
10693205--10693238	11	2.9	11	91	8	50	76	0	2	20	0.92
10693612--10693656	20	2.2	21	77	18	51	57	17	8	15	1.63
10694516--10694648	43	3.0	43	76	12	110	36	26	12	24	1.91
10694567--10694676	43	2.6	42	77	7	114	40	20	12	26	1.89
10694966--10694990	13	1.9	13	100	0	50	40	12	24	24	1.88
10699919--10699978	23	2.6	23	100	0	120	51	25	5	18	1.66
10699968--10700056	16	5.7	16	74	10	67	49	26	2	21	1.61
10699970--10700056	30	2.8	31	78	5	86	48	27	2	21	1.62
10700006--10700095	16	5.7	16	71	7	67	50	24	2	23	1.61
10700006--10700081	32	2.4	31	82	6	82	50	26	1	22	1.57
10700036--10700079	23	1.9	23	95	0	79	54	27	0	18	1.44
10701266--10701342	23	3.2	23	71	15	59	71	0	6	22	1.08
10701679--10701758	20	4.1	19	84	7	99	50	21	1	27	1.57
10701745--10701789	23	2.0	23	86	0	63	46	26	6	20	1.75
10701771--10701804	15	2.3	15	89	0	50	50	23	8	17	1.74
10704596--10704654	23	2.5	24	83	5	75	49	33	1	15	1.55
10705119--10705151	17	1.9	17	100	0	66	36	12	12	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10705809--10705847	17	2.2	17	86	13	53	76	0	5	17	0.96
10705816--10705882	27	2.6	27	81	13	70	71	0	7	20	1.10
10706207--10706288	19	4.3	18	77	13	67	53	20	1	24	1.53
10706207--10706319	20	5.6	20	77	13	83	50	22	2	24	1.62
10706215--10706294	20	4.1	19	82	7	90	50	22	1	26	1.57
10706281--10706342	23	2.7	23	87	0	97	45	29	6	19	1.75
10706985--10707219	128	1.8	127	81	6	296	42	11	22	23	1.86
10715523--10715555	14	2.4	14	100	0	66	12	24	24	39	1.89
10718855--10718913	28	2.1	27	81	9	66	72	0	1	25	0.93
10719292--10719340	20	2.4	20	86	10	64	48	26	2	22	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93