genome.fa.s190.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  80  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12198683--12198768	24	3.6	24	71	14	63	43	0	0	56	0.99
12198704--12198770	16	4.1	16	68	21	57	44	0	0	55	0.99
12200153--12200255	51	2.0	51	90	0	161	14	30	25	30	1.95
12209925--12209952	5	5.6	5	100	0	56	64	0	0	35	0.94
12210157--12210232	18	4.6	15	73	20	55	60	2	1	35	1.19
12210156--12210232	34	2.3	34	82	8	104	59	3	1	35	1.24
12210200--12210251	22	2.4	21	78	6	68	55	1	0	42	1.10
12214327--12214363	14	2.5	14	91	8	56	56	0	0	43	0.99
12214497--12214535	17	2.2	18	90	4	62	76	2	0	20	0.90
12214498--12214546	6	7.8	6	78	17	55	77	2	2	18	0.96
12216357--12216435	23	3.5	23	81	6	90	55	1	1	41	1.16
12216370--12216434	22	2.9	23	83	4	87	56	1	0	41	1.08
12220621--12220654	13	2.4	14	90	9	52	44	0	0	55	0.99
12220989--12221029	20	2.0	20	90	9	66	48	0	0	51	1.00
12224514--12224549	2	18.0	2	100	0	72	0	50	0	50	1.00
12224946--12224978	16	2.1	16	88	11	50	0	6	6	87	0.65
12226183--12226749	282	2.0	281	92	2	933	43	9	7	39	1.65
12226622--12227168	270	2.0	270	87	3	785	44	7	5	42	1.56
12227867--12227944	32	2.5	32	87	2	113	34	8	10	46	1.69
12236612--12236857	21	10.9	21	70	12	89	41	6	14	36	1.73
12236614--12236756	46	3.1	46	82	1	162	40	8	16	34	1.78
12236677--12236773	24	4.1	24	73	12	76	45	8	11	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12236677--12236810	70	1.9	70	81	6	164	44	8	11	35	1.73
12236776--12236857	22	3.8	22	80	1	94	42	2	15	39	1.61
12237495--12237587	38	2.4	40	80	7	100	24	10	18	46	1.81
12240819--12240922	30	3.4	30	80	4	84	50	3	7	38	1.50
12240825--12240972	60	2.5	58	80	7	138	53	2	5	38	1.38
12243822--12243881	31	1.9	31	83	10	77	60	1	6	31	1.33
12248245--12248288	19	2.3	19	80	11	54	65	0	2	31	1.05
12250810--12250859	25	2.0	25	84	3	66	56	4	0	40	1.18
12252461--12252514	29	1.9	27	85	14	74	37	9	14	38	1.79
12252527--12252576	19	2.5	20	80	9	57	62	6	4	28	1.37
12253185--12253214	14	2.1	15	93	6	53	43	0	0	56	0.99
12254346--12254383	18	2.1	18	90	0	58	44	2	2	50	1.30
12261653--12261686	17	2.0	17	100	0	68	29	11	5	52	1.61
12262276--12262475	100	2.0	100	93	0	337	32	13	20	34	1.91
12264984--12265044	29	2.1	29	82	8	72	40	1	1	55	1.19
12266202--12266426	112	2.0	112	93	0	387	35	10	11	42	1.76
12266474--12266544	34	2.1	34	83	0	88	43	4	4	47	1.42
12272893--12272973	19	4.1	20	74	7	58	58	11	6	24	1.55
12272900--12272990	29	3.1	29	82	0	101	57	9	4	28	1.51
12291930--12292526	69	8.8	68	82	10	636	35	8	5	49	1.57
12291930--12292526	133	4.4	133	84	6	679	35	8	5	49	1.57
12292593--12292635	15	2.7	15	85	7	50	67	0	2	30	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12293937--12294116	79	2.3	79	87	2	245	52	16	12	18	1.75
12293969--12294152	79	2.3	79	82	1	208	50	14	14	20	1.78
12294113--12294413	86	3.5	86	79	1	334	41	11	21	25	1.86
12294390--12294571	79	2.3	79	85	3	242	47	13	17	21	1.81
12295366--12295477	58	1.9	58	85	7	156	16	18	9	54	1.69
12295398--12295621	77	3.0	76	85	5	287	17	16	6	59	1.57
12295398--12295673	144	1.9	142	80	8	322	18	15	7	58	1.60
12295537--12295681	67	2.1	69	80	2	177	17	15	6	60	1.57
12301383--12301553	89	1.9	89	96	0	315	32	18	20	28	1.96
12303042--12303072	15	2.1	15	93	0	53	51	6	22	19	1.69
12306168--12306768	69	8.8	67	85	6	678	34	10	5	50	1.58
12306168--12306773	203	3.0	202	84	6	755	34	10	5	50	1.58
12306175--12306768	272	2.2	268	86	6	811	34	10	5	50	1.59
12308321--12308425	52	2.1	51	89	3	158	51	9	14	24	1.72
12318247--12318488	28	8.2	28	67	21	88	18	2	30	48	1.60
12318314--12318424	14	7.9	14	70	9	84	19	0	27	52	1.52
12318374--12318416	22	2.0	22	81	9	52	25	0	25	48	1.51
12318434--12318485	14	3.7	14	76	19	63	13	3	32	50	1.60
12318439--12318674	28	8.2	28	74	15	126	19	2	31	46	1.63
12318460--12318500	21	2.0	21	85	0	55	12	4	34	48	1.62
12318521--12318589	8	9.2	8	73	20	51	17	0	30	52	1.45
12318504--12318601	29	3.3	29	84	8	108	18	1	32	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12318563--12318661	28	3.4	29	83	5	130	21	3	29	46	1.66
12318988--12319018	3	10.0	3	93	6	53	32	0	0	67	0.91
12319068--12319118	15	3.3	15	77	2	57	29	5	3	60	1.38
12320868--12320897	15	1.9	16	93	6	53	46	0	0	53	1.00
12321797--12321836	20	2.0	20	90	0	62	65	2	5	27	1.27
12329868--12329897	2	15.5	2	93	6	53	50	0	0	50	1.00
12329953--12330150	98	2.0	99	93	2	335	29	14	20	35	1.92
12334060--12334145	34	2.5	34	76	10	95	38	6	10	44	1.66
12348900--12348932	16	2.1	15	94	5	57	12	3	0	84	0.72
12348900--12348937	8	4.6	8	84	15	51	10	2	2	84	0.83
12350007--12350163	41	3.8	41	80	0	170	44	20	11	23	1.84
12350309--12350359	23	2.2	22	86	6	66	41	15	13	29	1.86
12351885--12351959	16	4.6	16	77	11	73	6	12	1	80	0.97
12351898--12351964	10	6.8	10	80	13	59	7	13	1	77	1.04
12352305--12352352	24	2.0	24	87	0	69	6	25	0	68	1.12
12356537--12356580	22	2.0	22	86	8	63	9	6	0	84	0.79
12356539--12356578	20	2.0	21	90	5	64	7	7	0	85	0.76
12356922--12356948	2	13.5	2	100	0	54	0	48	0	51	1.00
12357082--12357127	21	2.2	21	88	7	67	60	10	2	26	1.41
12358097--12358146	17	3.0	17	71	11	50	16	6	12	66	1.43
12360392--12360423	16	2.0	16	100	0	64	25	37	0	37	1.56
12361608--12361668	29	2.1	29	85	8	81	42	3	6	47	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12361608--12361676	28	2.5	27	83	9	77	40	2	7	49	1.45
12362099--12362141	2	22.0	2	90	4	70	48	2	0	48	1.14
12365033--12365057	1	25.0	1	100	0	50	100	0	0	0	0.00
12368506--12368536	7	4.4	7	95	0	53	54	16	29	0	1.42
12372013--12372062	8	6.2	8	79	9	57	40	0	0	60	0.97
12372026--12372067	16	2.8	16	89	7	61	45	0	0	54	0.99
12372050--12372104	22	2.5	22	86	13	87	52	0	0	47	1.00
12373228--12373340	54	2.1	54	96	0	208	30	17	12	39	1.87
12379976--12380006	11	2.8	11	100	0	62	48	12	0	38	1.42
12380282--12380309	12	2.3	12	100	0	56	17	0	0	82	0.68
12380339--12380372	12	2.8	12	90	4	50	73	5	0	20	1.04
12380339--12380415	24	3.0	24	81	16	68	74	6	1	18	1.11
12384680--12384711	2	16.0	2	93	0	55	46	0	0	53	1.00
12393961--12394007	24	1.9	25	82	4	60	51	8	4	36	1.52
12401247--12401398	82	1.9	82	90	2	243	52	11	4	31	1.57
12415796--12415837	19	2.2	19	83	8	50	59	2	4	33	1.31
12416104--12416137	2	17.0	2	100	0	68	50	0	0	50	1.00
12417798--12417829	16	2.0	16	93	0	55	34	0	21	43	1.53
12418279--12418311	16	2.0	17	88	5	50	39	0	6	54	1.25
12418987--12419011	5	5.0	5	100	0	50	40	0	0	60	0.97
12426932--12426979	17	2.9	16	82	14	53	81	2	6	10	0.95
12427168--12427226	21	2.8	22	75	12	61	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12427373--12427426	16	3.6	16	69	23	53	38	0	12	48	1.42
12427378--12427442	29	2.2	29	97	0	121	38	0	10	50	1.37
12428283--12428369	15	5.7	15	74	12	61	27	4	20	47	1.70
12428276--12428373	45	2.2	45	83	7	119	27	6	19	46	1.73
12428772--12428810	12	3.2	12	85	3	51	5	7	0	87	0.68
12430010--12430066	26	2.2	26	84	6	71	78	3	8	8	1.05
12430200--12430237	19	2.0	19	89	0	58	63	2	0	34	1.09
12431225--12431267	2	21.5	2	90	0	68	46	0	0	53	1.00
12437102--12437134	16	2.1	16	100	0	66	27	12	18	42	1.85
12451147--12451198	23	2.2	24	83	10	63	32	7	1	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93