genome.fa.s190.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  33  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3575261--3575308	18	2.7	18	72	15	55	22	4	14	58	1.54
3575282--3575403	64	1.9	64	83	3	156	22	15	9	52	1.71
3576306--3576403	36	2.8	35	81	3	115	23	13	10	53	1.70
3576265--3576704	141	3.1	138	76	8	420	22	16	10	51	1.74
3576374--3576818	211	2.1	211	80	5	506	21	16	10	51	1.73
3577265--3577563	139	2.1	140	82	4	345	18	17	12	52	1.75
3577790--3578052	71	3.7	70	72	6	163	18	18	9	52	1.72
3578352--3578600	138	1.8	138	86	3	367	23	18	9	47	1.78
3579383--3579651	71	3.8	71	77	2	204	17	16	14	51	1.76
3580300--3580666	176	2.1	176	80	4	400	21	16	10	50	1.76
3580299--3580879	212	2.7	211	76	8	473	20	16	11	51	1.76
3581479--3581738	139	1.9	139	80	7	314	18	16	13	51	1.75
3581597--3581687	34	2.7	32	77	11	92	19	15	9	54	1.68
3581597--3581727	68	1.9	70	82	6	169	19	15	10	54	1.69
3581715--3581744	14	2.1	14	100	0	60	13	23	20	43	1.86
3581797--3581852	17	3.2	17	73	14	60	25	10	8	55	1.63
3582820--3583066	71	3.5	71	77	6	175	22	15	12	49	1.77
3582388--3590748	176	47.1	174	68	12	1126	19	16	12	51	1.75
3583545--3583636	47	2.0	47	82	0	112	22	15	7	54	1.66
3584701--3584855	71	2.2	70	79	6	170	17	12	14	55	1.69
3585157--3585198	22	1.9	22	95	0	75	23	21	2	52	1.59
3585769--3586040	141	1.9	141	79	1	303	17	15	13	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3585908--3586231	141	2.3	141	77	5	332	19	17	10	51	1.74
3586500--3586705	104	2.0	105	86	4	292	20	18	10	49	1.77
3586416--3586706	139	2.1	140	82	5	347	21	17	11	49	1.77
3586613--3586855	77	3.4	71	82	8	283	18	19	11	50	1.77
3586500--3586762	104	2.5	104	82	3	251	19	18	11	50	1.77
3587033--3587361	141	2.3	140	84	5	414	18	17	11	52	1.73
3587036--3587391	71	5.1	69	75	8	258	18	16	12	52	1.74
3587698--3590833	105	29.4	104	68	12	473	19	16	12	51	1.76
3587677--3588284	317	1.9	316	80	5	701	18	15	13	52	1.75
3588079--3588339	71	3.7	71	79	3	249	18	13	13	55	1.69
3587638--3588337	317	2.2	317	78	6	670	18	15	13	52	1.74
3588310--3588363	26	2.1	26	96	0	99	20	9	11	59	1.59
3588438--3588690	71	3.5	71	73	15	210	20	17	11	50	1.76
3588893--3589054	71	2.3	72	82	5	188	19	17	11	51	1.76
3588917--3589298	71	5.4	70	73	5	203	18	17	13	50	1.78
3589004--3589374	106	3.5	103	73	9	293	18	18	13	49	1.80
3588954--3589407	211	2.1	212	80	6	501	18	18	13	49	1.79
3589064--3589508	246	1.8	246	83	4	594	18	16	14	51	1.77
3589064--3589570	246	2.1	246	81	4	585	18	16	14	51	1.77
3590021--3590247	35	6.5	35	76	5	161	21	18	10	50	1.76
3590237--3590303	35	1.9	35	84	0	89	14	14	13	56	1.67
3590385--3590964	35	16.6	34	70	11	203	18	16	13	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3590279--3590484	114	1.8	113	80	7	247	17	16	14	51	1.76
3590580--3590779	71	2.8	70	77	5	190	18	15	11	55	1.69
3593661--3593775	37	3.1	37	85	5	151	39	22	13	24	1.91
3594796--3594890	32	2.9	33	76	3	104	28	20	18	32	1.96
3595190--3595398	34	6.1	34	69	15	92	29	16	21	32	1.95
3595304--3595417	34	3.3	34	78	6	122	30	14	20	34	1.93
3594978--3595387	66	6.1	66	67	10	197	30	15	19	34	1.93
3594908--3595422	68	7.7	67	68	9	199	30	15	19	34	1.93
3595583--3595636	22	2.5	22	87	6	74	27	18	14	38	1.90
3596814--3596861	21	2.2	22	85	10	64	22	0	14	62	1.32
3596831--3596881	25	2.1	24	81	3	57	23	3	11	60	1.47
3597376--3597445	22	3.4	21	79	15	74	12	5	5	75	1.16
3597396--3597446	21	2.4	21	83	9	68	13	5	3	76	1.11
3597662--3597696	15	2.3	15	90	0	61	80	2	0	17	0.84
3601783--3601829	24	2.0	24	86	0	67	72	2	21	4	1.12
3602198--3602236	19	2.1	19	95	4	71	79	0	10	10	0.94
3602192--3602256	27	2.4	28	89	5	98	75	0	13	10	1.05
3602192--3602256	8	7.2	9	80	16	73	75	0	13	10	1.05
3603947--3604097	42	3.6	41	86	6	194	27	13	20	38	1.91
3604557--3604602	21	2.2	21	84	7	58	23	2	15	58	1.48
3605136--3605200	23	2.8	23	79	11	69	15	3	6	75	1.12
3605145--3605203	13	4.6	13	77	16	52	15	5	6	72	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3605418--3605454	8	4.6	8	93	0	56	83	2	0	13	0.74
3605801--3605947	52	2.8	52	84	5	179	46	9	14	29	1.76
3606808--3606860	27	2.0	27	84	0	70	11	1	11	75	1.13
3606834--3606869	15	2.4	15	90	0	54	8	2	13	75	1.15
3607683--3607736	9	5.8	9	76	6	54	11	12	1	74	1.16
3611536--3611583	24	2.0	24	84	8	62	33	4	10	52	1.55
3616104--3616501	145	2.8	143	85	3	496	41	11	14	32	1.83
3617033--3617203	42	4.2	40	78	13	165	33	23	18	24	1.96
3617221--3617308	37	2.4	37	83	3	108	31	17	17	34	1.93
3623253--3623309	9	6.7	9	74	11	57	10	14	0	75	1.05
3630791--3630822	11	3.1	11	91	8	50	0	15	0	84	0.63
3632335--3632388	25	2.2	25	87	6	76	29	3	11	55	1.52
3632451--3632500	17	2.9	17	78	3	55	70	6	4	20	1.25
3633317--3633371	18	3.2	17	73	14	51	56	9	1	32	1.41
3633376--3633418	3	14.7	3	90	4	70	34	0	30	34	1.58
3633377--3633416	20	2.0	20	95	0	71	32	0	32	35	1.58
3633992--3634200	86	2.4	86	82	0	274	36	14	19	28	1.92
3639643--3639699	24	2.4	24	88	2	89	31	5	12	50	1.62
3639708--3639776	30	2.3	29	78	11	77	73	4	0	21	1.00
3639708--3639814	46	2.2	50	79	14	127	71	5	1	20	1.15
3639783--3639816	12	2.7	13	86	9	52	76	8	0	14	1.01
3640201--3640265	19	3.4	19	77	8	69	53	27	3	15	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3640610--3640657	3	16.3	3	82	4	62	62	4	0	33	1.14
3640817--3641064	95	2.6	96	74	12	242	39	8	12	39	1.74
3641325--3641351	11	2.5	11	100	0	54	0	25	0	74	0.83
3641738--3642271	43	12.6	42	69	12	220	42	16	9	30	1.81
3642039--3642246	44	4.8	44	72	10	133	44	17	9	28	1.80
3641991--3642271	87	3.2	85	77	9	255	45	16	8	29	1.76
3644680--3644742	33	1.9	33	96	0	117	31	22	20	25	1.98
3653731--3653856	63	2.0	63	83	6	157	46	4	11	36	1.62
3656444--3656471	3	9.3	3	100	0	56	64	0	0	35	0.94
3656583--3656620	17	2.2	18	86	13	53	36	2	2	57	1.26
3656926--3656959	2	17.0	2	93	0	59	47	0	0	52	1.00
3657043--3657075	2	16.5	2	100	0	66	48	0	0	51	1.00
3656927--3657157	116	2.0	116	93	0	399	41	4	24	29	1.75
3665741--3666125	128	3.0	128	97	0	727	28	11	16	44	1.82
3671917--3671965	23	2.1	24	88	3	73	61	2	16	20	1.44
3672744--3672804	29	2.1	29	100	0	122	32	22	14	29	1.94
3673436--3673518	28	3.0	28	94	0	139	22	16	15	44	1.86
3675279--3675306	10	2.8	10	100	0	56	50	10	21	17	1.77
3686072--3686188	58	2.0	58	96	0	216	25	16	16	41	1.88
3688198--3688252	3	17.7	3	90	3	83	32	1	0	65	1.03
3690006--3690039	4	8.5	4	87	12	52	26	0	0	73	0.83
3690008--3690052	12	3.6	13	82	17	60	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3690772--3690929	32	5.0	32	70	11	103	32	15	13	37	1.87
3690880--3690964	32	2.7	31	75	7	80	29	15	18	36	1.92
3691010--3691298	33	9.0	33	72	16	146	25	15	21	37	1.93
3691116--3691197	32	2.7	29	75	20	80	29	14	19	36	1.92
3691530--3691571	22	1.9	22	90	0	66	28	23	21	26	1.99
3691551--3691776	94	2.4	94	83	2	276	31	16	16	34	1.92
3691795--3692018	32	7.0	32	77	6	143	25	17	20	37	1.94
3691844--3692004	63	2.6	63	80	2	171	24	17	21	36	1.94
3691789--3692017	95	2.4	96	82	2	273	25	17	19	37	1.93
3692149--3692205	22	2.6	22	76	20	57	26	17	21	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93