genome.fa.s190.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  88  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14409342--14409425	42	2.0	42	88	0	123	35	10	8	45	1.69
14409364--14409611	60	4.2	60	87	4	362	33	11	8	46	1.70
14409662--14409705	17	2.5	18	85	7	63	75	4	6	13	1.17
14409727--14409756	8	3.8	8	95	0	51	76	6	0	16	0.99
14410667--14410700	17	1.9	18	88	5	52	79	2	2	14	0.97
14410726--14410830	16	6.6	16	69	20	60	64	7	0	27	1.20
14410696--14410821	35	3.6	34	74	18	100	62	6	0	30	1.25
14415050--14415100	25	2.2	24	86	10	70	45	3	7	43	1.51
14418174--14418210	19	1.9	19	88	0	56	13	0	2	83	0.74
14418196--14418263	35	2.0	33	88	5	100	38	8	1	51	1.42
14419578--14419626	23	2.0	25	84	7	66	44	2	2	51	1.24
14419663--14419712	17	2.8	18	77	17	52	38	2	4	56	1.30
14420941--14421043	30	3.4	30	80	6	109	38	13	4	42	1.66
14421267--14421298	2	16.0	2	93	0	55	46	0	0	53	1.00
14421327--14421382	21	2.8	20	81	5	58	53	5	0	41	1.24
14421344--14421388	20	2.2	21	84	4	56	57	0	0	42	0.98
14421776--14421874	25	4.0	24	73	13	74	30	3	1	65	1.14
14425840--14425871	16	2.0	16	93	0	55	0	0	21	78	0.76
14426439--14426468	13	2.2	14	94	5	53	50	20	3	26	1.64
14426500--14426529	13	2.3	13	100	0	60	46	13	6	33	1.69
14426410--14426588	61	3.0	60	87	2	259	36	25	11	26	1.89
14426548--14426627	36	2.2	37	86	2	117	37	26	6	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14426588--14426737	48	3.1	48	83	2	196	36	22	9	32	1.86
14426770--14427371	49	12.1	48	79	10	548	34	24	10	29	1.89
14426770--14427371	98	6.0	98	82	9	691	34	24	10	29	1.89
14427017--14427141	61	2.0	60	88	8	182	35	22	10	32	1.88
14426822--14427328	256	2.0	258	92	0	856	35	24	10	29	1.89
14438375--14438418	23	2.0	22	86	13	63	11	2	6	79	1.01
14439518--14439567	18	2.6	19	87	6	66	32	2	0	66	1.03
14439380--14439938	203	2.7	205	88	4	779	33	14	7	44	1.74
14443088--14443115	4	7.0	4	100	0	56	75	0	25	0	0.81
14446703--14446741	18	2.2	18	86	4	53	58	0	7	33	1.26
14447275--14447336	25	2.5	25	89	0	97	33	14	32	19	1.92
14456376--14456470	30	3.1	30	81	1	109	40	15	3	41	1.63
14460768--14460805	2	20.0	2	84	10	53	44	0	0	55	0.99
14472302--14472359	29	2.0	30	93	3	100	55	0	6	37	1.27
14472304--14472392	29	2.9	31	83	8	94	58	1	4	35	1.26
14472303--14472407	30	3.5	31	83	8	101	55	0	4	39	1.28
14480087--14480142	21	2.7	21	76	13	62	26	16	3	53	1.59
14490383--14490784	72	5.6	70	74	13	300	39	5	4	50	1.46
14490370--14490685	146	2.1	146	75	11	315	38	6	4	50	1.47
14492834--14492896	17	3.9	17	75	10	60	61	0	1	36	1.05
14493408--14493432	13	1.9	13	100	0	50	36	0	16	48	1.46
14493683--14493729	23	2.0	23	84	8	60	46	4	2	46	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14494049--14494079	2	15.5	2	100	0	62	0	48	0	51	1.00
14494307--14494342	17	2.2	16	90	5	54	50	0	2	47	1.15
14496490--14496519	11	2.7	11	94	0	51	46	0	0	53	1.00
14496575--14496616	22	2.0	22	85	4	59	23	0	7	69	1.13
14500638--14500711	19	3.7	19	71	16	69	36	5	13	44	1.67
14500621--14500722	41	2.5	41	85	3	143	36	3	11	48	1.59
14500663--14500718	11	5.4	11	70	12	55	37	5	10	46	1.62
14500670--14500728	30	2.0	30	89	0	91	37	3	13	45	1.60
14500887--14500936	19	2.7	18	84	6	64	14	18	2	66	1.35
14503730--14503762	15	2.1	16	88	5	50	15	0	9	75	1.03
14503737--14503777	21	2.0	20	85	4	55	17	0	2	80	0.82
14504283--14504308	1	26.0	1	100	0	52	100	0	0	0	0.00
14512765--14512789	4	6.2	4	100	0	50	0	24	0	76	0.80
14513237--14513288	27	2.0	26	88	3	77	42	1	3	51	1.31
14513337--14513397	30	2.0	30	81	6	70	34	1	3	60	1.23
14514616--14514657	22	2.0	22	90	4	68	30	2	2	64	1.19
14514826--14514925	29	3.5	28	74	10	87	29	4	7	60	1.41
14514880--14514917	18	2.1	19	90	5	60	26	0	7	65	1.19
14514988--14515044	6	9.3	6	77	11	53	36	0	1	61	1.07
14519575--14519614	14	2.9	14	92	0	62	45	12	0	42	1.42
14520997--14521022	2	13.0	2	100	0	52	50	0	0	50	1.00
14521067--14521103	19	1.9	19	94	0	65	40	8	2	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14522613--14522649	19	1.9	19	94	0	65	27	37	10	24	1.88
14523266--14523318	3	17.7	3	96	0	97	32	1	0	66	1.03
14525895--14525941	23	2.0	23	95	0	85	40	6	21	31	1.78
14530072--14530118	25	1.9	24	82	4	58	53	2	4	40	1.32
14530426--14530460	17	2.1	16	89	5	52	54	0	14	31	1.40
14530854--14530972	16	7.5	16	74	5	98	21	2	30	46	1.64
14530853--14530971	47	2.5	48	81	2	159	21	2	31	45	1.65
14530837--14530967	31	4.1	31	77	5	102	20	3	32	44	1.67
14532896--14532988	36	2.5	37	84	1	125	48	13	22	15	1.80
14533027--14533083	24	2.5	24	77	11	66	33	19	21	26	1.97
14533349--14533430	34	2.4	34	87	0	119	46	10	23	19	1.81
14533366--14533418	15	3.1	17	70	20	56	50	5	24	18	1.68
14533517--14533706	102	1.9	102	83	2	247	48	13	15	22	1.79
14533618--14534232	171	3.6	169	83	3	712	44	12	20	22	1.85
14535438--14535489	24	2.3	22	83	9	70	5	9	3	80	0.99
14535438--14535495	22	2.7	23	85	15	70	5	10	3	81	0.97
14546762--14546980	16	14.3	15	72	11	65	23	2	26	47	1.65
14546695--14546810	58	2.0	58	81	9	139	21	0	31	46	1.57
14546814--14546967	16	9.9	16	77	8	122	20	3	27	48	1.67
14546827--14547004	31	5.7	32	80	7	197	21	2	28	47	1.64
14546834--14547004	63	2.7	62	85	3	191	21	2	28	47	1.65
14548537--14548583	3	15.7	3	78	8	51	36	0	2	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14548550--14548586	18	2.1	18	90	10	58	43	0	0	56	0.99
14549341--14549382	21	2.0	22	90	4	68	42	0	7	50	1.30
14549463--14549498	18	2.0	18	88	0	54	36	8	8	47	1.64
14549469--14549507	18	2.2	18	85	0	51	35	5	5	53	1.45
14549660--14549689	11	2.6	11	94	5	51	60	0	0	40	0.97
14552066--14552107	20	2.0	20	86	9	57	30	0	0	69	0.89
14552126--14552165	14	2.9	14	96	0	71	47	10	0	42	1.37
14552629--14552654	2	13.0	2	100	0	52	50	0	0	50	1.00
14553790--14553826	19	1.9	19	94	0	65	27	37	10	24	1.88
14554751--14554785	10	3.4	10	88	7	52	31	0	5	62	1.18
14555698--14555741	23	2.0	23	86	4	63	50	13	0	36	1.42
14555733--14555787	18	3.2	17	75	14	51	78	0	1	20	0.85
14555737--14555769	15	2.1	16	88	5	50	78	0	0	21	0.75
14556755--14556807	9	5.9	9	80	8	54	3	3	7	84	0.84
14556749--14556818	32	2.2	33	84	2	88	7	4	7	81	0.98
14556755--14556807	18	3.0	17	78	10	61	3	3	7	84	0.84
14556762--14556815	24	2.3	24	87	9	76	5	1	7	85	0.81
14556768--14556818	8	6.2	8	80	13	50	7	1	5	84	0.85
14557330--14557371	21	2.0	22	90	4	68	42	0	7	50	1.30
14557452--14557487	18	2.0	18	88	0	54	36	8	8	47	1.64
14557458--14557496	18	2.2	18	85	0	51	35	5	5	53	1.45
14557649--14557678	11	2.6	11	94	5	51	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14561320--14561348	11	2.5	12	88	11	51	27	0	0	72	0.85
14563037--14563061	1	25.0	1	100	0	50	0	0	0	100	0.00
14567303--14567472	88	1.9	88	93	2	297	41	24	10	23	1.86
14571711--14571746	16	2.2	16	100	0	72	5	27	33	33	1.80
14572402--14572453	26	2.0	26	100	0	104	30	19	3	46	1.68
14573742--14573791	25	2.0	25	100	0	100	32	12	32	24	1.91
14574558--14574604	24	2.0	24	95	0	85	19	14	31	34	1.92
14578703--14578760	27	2.1	27	83	3	71	46	1	0	51	1.11
14578716--14578767	27	1.9	28	84	7	72	46	0	0	53	1.00
14587454--14587478	13	1.9	13	100	0	50	32	20	0	48	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93