genome.fa.s190.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  10  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1080633--1081134	158	3.2	156	74	5	454	21	27	28	22	1.99
1081108--1081160	26	2.0	26	92	0	88	30	24	18	26	1.98
1081310--1081982	340	2.0	339	92	2	1111	33	20	17	28	1.95
1082687--1082737	26	2.0	26	84	7	68	25	33	13	27	1.94
1083054--1083105	26	2.0	25	92	3	86	26	28	21	23	1.99
1082650--1083304	354	1.8	361	82	5	842	21	27	29	22	1.99
1083492--1083543	26	2.0	25	85	10	70	25	21	21	32	1.98
1084187--1084239	26	2.0	26	88	0	79	26	28	18	26	1.98
1084690--1084739	26	1.9	26	92	8	84	24	24	22	30	1.99
1084117--1085769	512	3.2	509	81	5	1792	19	27	29	24	1.99
1085329--1085742	158	2.6	158	77	6	417	17	26	30	25	1.97
1086447--1086500	26	2.0	27	92	3	92	25	27	22	24	2.00
1086824--1086880	26	2.2	26	87	0	78	28	22	21	28	1.99
1088883--1088935	26	2.0	26	88	0	79	28	26	18	26	1.98
1090095--1090593	158	3.2	156	74	5	466	19	25	30	24	1.98
1090569--1090619	26	2.0	26	84	7	68	31	21	17	29	1.96
1091094--1091477	158	2.4	159	82	2	450	18	25	30	25	1.98
1091025--1091477	159	2.9	157	78	3	494	19	26	29	25	1.98
1091449--1091501	26	2.0	26	92	7	90	26	24	20	28	1.99
1092170--1092222	26	2.0	26	92	0	88	28	28	18	24	1.98
1092513--1092565	26	2.0	26	89	7	81	28	24	18	28	1.98
1093420--1093472	26	2.0	26	89	7	81	28	24	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1094634--1094933	159	1.9	158	79	4	343	18	26	31	24	1.97
1096088--1096140	26	2.0	26	89	7	81	26	24	18	30	1.98
1096469--1096521	26	2.0	26	89	7	81	26	24	18	30	1.98
1096179--1096876	184	3.7	184	77	7	675	21	27	27	23	1.99
1096665--1096717	26	2.0	26	86	13	74	30	26	16	26	1.97
1096078--1096876	380	2.1	380	87	1	1127	21	27	27	23	1.99
1097545--1097598	26	2.1	26	89	6	83	29	25	16	27	1.97
1098325--1098502	88	2.0	88	98	0	347	14	26	30	28	1.95
1100230--1100281	25	2.0	26	88	3	79	26	25	19	28	1.98
1100940--1100992	26	2.0	26	92	0	88	24	28	20	26	1.99
1101283--1101335	26	2.0	26	92	7	90	26	22	20	30	1.98
1101993--1102067	26	2.9	26	95	0	132	26	30	20	22	1.98
1102381--1102433	26	2.0	26	88	0	79	28	22	20	28	1.99
1102880--1102932	26	2.0	26	82	7	63	24	20	22	32	1.98
1103738--1104292	159	3.5	156	77	3	520	20	28	27	22	1.99
1104960--1105011	26	2.0	26	92	7	88	26	26	19	26	1.99
1105872--1106356	158	3.1	155	74	5	441	19	25	30	24	1.98
1106340--1106392	26	2.0	26	85	7	72	28	22	18	30	1.98
1106738--1106790	26	2.0	26	92	0	88	32	28	15	24	1.95
1104910--1107013	899	2.4	878	82	4	2415	20	26	28	24	1.99
1113290--1113340	26	2.0	26	88	7	77	25	25	19	29	1.99
1113316--1113975	159	4.2	157	77	6	534	18	26	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1113950--1114001	26	2.0	26	92	7	88	26	25	19	28	1.98
1114670--1114722	26	2.0	26	92	0	88	26	26	20	26	1.99
1115013--1115065	26	2.0	26	92	7	90	26	24	20	28	1.99
1115738--1115790	26	2.0	26	85	0	70	26	22	20	30	1.98
1115764--1116160	159	2.5	157	75	6	395	22	26	29	21	1.99
1116240--1116292	26	2.0	26	85	7	72	24	20	20	33	1.97
1116088--1116634	183	3.0	182	80	4	612	19	25	29	25	1.99
1116449--1116951	159	3.2	158	73	6	451	20	25	29	24	1.99
1116766--1117321	185	3.0	183	82	4	661	21	25	28	24	1.99
1117110--1117162	26	2.0	26	92	0	88	28	28	18	24	1.98
1115698--1117666	685	2.9	682	86	2	2631	20	26	28	24	1.99
1117136--1117638	159	3.2	158	73	5	372	20	25	29	24	1.99
1117612--1117664	26	2.0	26	85	7	72	26	24	20	28	1.99
1121275--1121876	159	3.8	157	78	6	583	23	29	28	18	1.98
1121269--1121919	317	2.1	316	80	6	726	23	28	27	19	1.98
1123301--1123353	26	2.0	26	85	7	72	30	18	22	28	1.98
1123644--1123696	26	2.0	26	92	0	88	24	15	28	32	1.95
1123853--1123905	26	2.0	26	89	7	81	28	18	24	28	1.98
1124641--1124690	25	2.0	24	85	11	66	26	18	30	26	1.98
1125358--1125410	26	2.0	26	85	7	72	33	20	18	26	1.96
1126219--1126271	26	2.0	26	85	7	72	28	18	26	26	1.98
1126587--1126639	26	2.0	26	89	7	81	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126734--1127080	157	2.2	159	78	2	376	23	30	26	19	1.98
1127054--1127106	26	2.0	26	86	13	74	26	16	26	30	1.97
1128120--1128172	26	2.0	26	92	0	88	22	20	28	28	1.99
1128879--1128931	26	2.0	26	92	0	88	28	22	24	24	2.00
1127776--1129015	550	2.3	547	84	3	1583	23	29	27	20	1.99
1127776--1129207	550	2.6	550	82	3	1445	22	29	26	20	1.99
1128905--1129434	158	3.4	157	74	5	426	23	30	26	19	1.98
1129444--1129468	13	1.9	13	100	0	50	24	20	48	8	1.76
1129732--1129784	26	2.0	26	88	0	79	30	22	20	26	1.98
1129758--1130259	158	3.2	158	76	5	447	24	29	25	20	1.99
1130233--1130285	26	2.0	26	92	0	88	26	20	26	26	1.99
1130955--1131007	26	2.0	26	89	7	81	28	18	24	28	1.98
1131702--1132197	158	3.1	156	75	7	435	22	29	27	20	1.98
1132900--1132952	26	2.0	26	89	7	81	28	18	24	28	1.98
1133621--1133673	26	2.0	26	89	7	81	30	20	22	26	1.98
1133646--1134148	158	3.2	158	77	5	453	22	29	28	20	1.98
1139897--1139942	18	2.6	18	89	0	65	26	34	30	8	1.86
1141536--1141587	26	2.0	26	88	7	79	26	17	25	30	1.97
1141006--1141842	368	2.3	366	84	1	1104	24	27	27	21	1.99
1142244--1142296	26	2.0	26	89	7	81	32	22	20	24	1.98
1141884--1142855	512	1.9	501	81	4	1155	24	29	26	20	1.99
1142269--1142676	159	2.6	158	79	4	437	25	30	27	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1142745--1142797	26	2.0	26	92	0	88	24	18	28	28	1.98
1143969--1144021	26	2.0	26	96	0	97	28	20	24	26	1.99
1144192--1144697	159	3.2	155	78	7	471	24	28	27	19	1.98
1143467--1144767	703	1.9	697	84	2	1739	24	28	27	19	1.99
1144671--1144723	26	2.0	26	92	0	88	26	20	26	26	1.99
1145386--1145437	26	2.0	26	92	7	88	30	19	23	26	1.98
1145411--1146229	159	5.2	156	73	6	619	24	29	26	19	1.98
1145410--1146229	316	2.6	315	83	3	941	24	29	26	19	1.98
1146203--1146254	26	2.0	26	88	0	77	26	17	26	28	1.97
1146926--1146978	26	2.0	26	85	7	72	28	20	20	30	1.98
1147269--1147321	26	2.0	26	92	0	88	24	15	28	32	1.95
1148379--1148447	35	2.0	35	100	0	138	30	26	23	20	1.98
1148566--1148618	26	2.0	26	89	7	81	28	18	24	28	1.98
1148591--1149093	158	3.2	157	81	2	551	22	29	26	20	1.99
1149067--1149118	26	2.0	26	92	0	86	25	17	28	28	1.97
1156901--1157318	159	2.6	159	79	3	473	24	30	27	17	1.97
1157373--1157425	26	2.0	26	88	0	79	26	20	24	28	1.99
1157767--1158331	159	3.6	157	75	9	520	24	30	27	17	1.97
1159881--1160378	159	3.1	155	77	7	511	23	30	27	18	1.98
1160359--1160411	26	2.0	26	88	0	79	26	18	26	28	1.98
1162069--1162121	26	2.0	26	92	0	88	26	20	26	26	1.99
1162436--1162488	26	2.0	26	92	7	90	28	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162277--1162646	184	2.0	184	86	0	515	24	30	25	19	1.98
1162462--1162962	158	3.2	157	78	5	519	23	30	26	18	1.98
1162937--1162988	26	2.0	26	88	0	77	26	21	26	25	1.99
1163634--1163686	26	2.0	26	92	7	90	28	20	24	26	1.99
1163659--1164104	158	2.8	157	75	4	423	23	30	27	18	1.98
1164774--1164798	11	2.3	11	100	0	50	20	32	28	20	1.97
1164869--1164921	26	2.0	26	89	7	81	30	20	22	26	1.98
1165370--1165422	26	2.0	26	96	0	97	24	20	28	26	1.99
1165763--1165815	26	2.0	26	89	7	81	24	18	28	28	1.98
1165539--1165888	184	1.9	183	84	1	468	24	28	27	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93