genome.fa.s190.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  47  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5933312--5933536	115	2.0	115	90	3	355	33	13	14	38	1.85
5934684--5934812	33	3.9	33	76	0	96	29	19	15	35	1.93
5934666--5934888	66	3.4	65	76	9	193	30	17	16	35	1.93
5935964--5936536	132	4.3	132	79	2	544	24	18	16	40	1.90
5936171--5936222	22	2.3	23	80	6	63	26	23	17	32	1.96
5935964--5936504	264	2.0	263	81	2	636	24	18	16	40	1.91
5936445--5936500	22	2.5	22	91	0	94	30	21	16	32	1.95
5936696--5936766	37	1.9	37	88	5	108	19	21	11	47	1.80
5936696--5936795	37	2.7	37	83	9	107	20	19	12	49	1.79
5937135--5937213	28	2.9	26	85	7	95	27	25	13	32	1.94
5938553--5938608	21	2.7	21	83	10	62	67	1	3	26	1.16
5938877--5938994	28	4.1	28	73	12	114	52	27	0	18	1.51
5938877--5939211	14	23.2	14	65	13	81	49	30	0	18	1.54
5938953--5939222	58	4.6	58	76	9	183	47	33	0	18	1.54
5938982--5939221	87	2.7	87	85	5	297	47	33	0	17	1.54
5938899--5939222	29	11.1	29	71	12	157	48	32	0	18	1.54
5939224--5939280	21	2.6	22	81	13	57	43	40	5	10	1.62
5941447--5941500	18	2.9	18	77	2	54	57	11	3	27	1.50
5941472--5941501	12	2.5	12	94	0	51	60	10	6	23	1.52
5941799--5941867	26	2.6	26	86	8	88	44	2	2	49	1.32
5942017--5942055	17	2.4	16	91	8	62	46	2	0	51	1.14
5942193--5942277	21	4.3	20	76	13	77	45	2	1	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5942223--5942261	17	2.4	16	91	8	62	46	2	0	51	1.14
5942202--5942277	38	2.0	38	82	5	91	44	2	1	51	1.23
5941976--5942388	207	2.0	201	89	6	627	46	4	2	46	1.38
5942011--5942483	207	2.3	205	83	8	512	47	4	2	45	1.36
5942683--5942744	31	2.0	31	96	0	115	35	8	6	50	1.58
5943028--5943075	20	2.5	19	86	3	60	25	2	6	66	1.26
5943756--5944004	125	2.0	125	97	0	471	36	27	15	20	1.93
5944113--5944156	21	2.1	21	87	8	63	56	0	4	38	1.20
5944126--5944172	21	2.2	21	85	7	60	61	0	2	36	1.08
5944117--5944171	27	2.0	27	86	6	76	60	0	3	36	1.15
5945768--5945905	34	4.1	34	76	3	107	35	10	14	39	1.81
5954051--5954486	185	2.4	185	82	1	507	33	13	12	40	1.82
5954447--5954532	45	1.9	44	92	2	145	34	12	3	48	1.58
5954489--5955124	328	1.9	328	84	3	852	33	14	11	41	1.82
5954807--5955359	186	3.0	185	82	5	659	34	15	10	39	1.81
5956019--5956087	25	2.8	24	86	6	93	21	4	33	40	1.73
5966333--5966381	21	2.3	21	80	16	57	48	18	8	24	1.75
5967426--5967460	18	1.9	18	88	0	52	57	5	2	34	1.37
5969786--5969820	15	2.2	16	90	10	54	65	0	0	34	0.93
5971029--5971078	3	16.7	3	79	8	57	60	0	8	32	1.26
5971031--5971078	19	2.5	20	93	6	89	60	0	8	31	1.26
5971254--5971297	18	2.4	19	96	3	81	22	0	34	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5971263--5971306	18	2.4	18	92	0	70	20	2	27	50	1.60
5971368--5971450	14	5.4	15	78	13	80	51	32	0	15	1.44
5971423--5971530	51	2.1	51	86	5	148	47	37	0	13	1.50
5971403--5971491	14	6.2	14	76	8	72	50	38	1	10	1.43
5971467--5971499	14	2.3	15	89	5	50	54	42	0	3	1.15
5976376--5976417	22	2.0	21	86	13	59	59	0	4	35	1.19
5983189--5983245	23	2.5	22	83	11	62	63	1	0	35	1.05
5986167--5986442	58	4.7	57	82	4	320	37	12	6	43	1.68
5986166--5986440	116	2.4	116	87	5	394	36	12	6	44	1.69
5986450--5986501	14	3.5	15	78	19	56	73	1	7	17	1.16
5987447--5987583	3	44.7	3	67	20	52	67	1	3	27	1.16
5987473--5987588	30	3.8	29	71	20	85	70	1	2	25	1.09
5987486--5987596	28	4.1	28	76	15	92	71	2	1	24	1.09
5987791--5988838	44	23.8	44	79	9	952	39	18	15	25	1.91
5987791--5988848	86	12.1	85	80	8	1065	39	19	15	25	1.91
5987791--5988848	176	6.0	170	80	8	1065	39	19	15	25	1.91
5987799--5988827	262	3.9	263	85	4	1183	39	18	15	26	1.91
5989815--5989874	22	2.8	22	90	7	88	8	13	0	78	0.96
5989815--5989876	21	2.9	21	86	9	81	9	14	0	75	1.03
6000269--6000431	63	2.7	61	89	8	260	36	14	7	41	1.73
6000447--6000514	5	13.8	5	71	20	54	75	1	4	19	1.06
6000442--6000517	9	8.0	9	72	24	50	75	1	5	18	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6000529--6000563	3	12.0	3	87	6	54	68	0	0	31	0.90
6000529--6000556	14	2.0	14	100	0	56	64	0	0	35	0.94
6001360--6001397	8	4.9	8	80	6	51	84	2	0	13	0.73
6001359--6001398	15	2.5	17	84	12	57	85	2	0	12	0.71
6001359--6001400	18	2.5	18	81	11	54	83	2	0	14	0.75
6001436--6001492	18	2.9	18	72	25	53	57	3	5	33	1.38
6001512--6001624	3	37.0	3	70	16	63	65	0	4	29	1.18
6001446--6001646	10	19.5	10	68	19	87	64	1	4	29	1.22
6001537--6001640	27	3.8	28	72	20	96	67	0	2	28	1.11
6003849--6004122	41	6.4	43	82	3	290	22	15	20	41	1.89
6004327--6004410	26	3.3	24	78	12	105	32	3	0	64	1.11
6004404--6004455	22	2.3	22	90	3	77	34	7	0	57	1.27
6004325--6004452	53	2.5	52	89	7	190	33	5	0	60	1.19
6005271--6005315	16	2.9	16	87	9	58	28	0	2	68	1.01
6005333--6005381	5	9.4	5	91	4	62	18	4	0	77	0.92
6005409--6005629	58	3.8	58	86	8	304	42	5	13	38	1.69
6005409--6005629	59	3.8	58	88	5	302	42	5	13	38	1.69
6005612--6006021	153	2.6	155	79	15	456	32	11	10	46	1.73
6005769--6006084	160	2.0	160	91	4	516	30	12	9	47	1.74
6007025--6007081	17	3.2	17	73	9	51	36	1	3	57	1.26
6007111--6007140	13	2.3	13	94	0	51	36	0	0	63	0.95
6008329--6008373	19	2.5	18	82	10	56	33	2	0	64	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6008537--6008576	20	2.0	21	90	5	64	27	0	2	70	1.01
6009618--6009662	19	2.2	22	88	11	69	80	0	6	13	0.91
6009852--6009928	19	4.1	19	72	5	57	48	3	1	46	1.28
6010928--6010994	27	2.5	28	85	4	93	53	2	1	41	1.25
6014707--6014762	25	2.2	25	100	0	112	26	19	10	42	1.84
6015384--6015445	32	1.9	32	83	6	81	43	11	6	38	1.66
6018067--6018105	9	4.2	9	96	3	69	38	0	0	61	0.96
6018135--6018700	210	2.7	206	89	5	856	33	15	8	42	1.77
6018935--6018977	14	3.1	15	83	12	56	2	20	39	37	1.66
6018936--6019028	32	2.9	32	88	0	141	3	20	39	36	1.69
6019240--6019265	8	3.2	8	100	0	52	38	0	61	0	0.96
6019855--6019888	4	8.8	4	87	6	52	2	0	17	79	0.86
6019835--6019889	11	4.7	11	83	16	67	3	1	14	80	0.94
6019845--6019892	9	5.8	9	78	14	50	2	2	16	79	0.93
6021066--6021137	27	2.6	27	76	21	78	45	1	0	52	1.09
6021066--6021158	28	3.5	26	76	20	79	46	1	1	51	1.15
6021423--6021455	17	1.9	17	93	0	57	81	0	12	6	0.85
6022539--6022585	18	2.6	19	83	10	62	74	0	2	23	0.93
6022740--6022773	17	1.9	18	88	5	52	70	0	0	29	0.87
6023238--6023271	17	1.9	18	88	5	52	52	0	0	47	1.00
6026745--6026793	20	2.4	21	80	19	59	55	14	4	26	1.57
6026920--6026963	14	3.1	14	78	12	54	77	2	2	18	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6026920--6026987	5	13.4	5	73	17	52	76	4	2	16	1.07
6026923--6026995	14	5.2	14	71	12	53	76	5	2	15	1.08
6031828--6031857	14	2.1	14	100	0	60	80	0	0	20	0.72
6031868--6031908	3	13.7	3	100	0	82	68	31	0	0	0.90
6031907--6031942	3	12.0	3	100	0	72	66	0	0	33	0.92
6032003--6032055	26	2.0	26	96	0	97	28	30	22	18	1.98
6032477--6032923	116	3.9	116	77	6	397	37	13	24	24	1.91
6032542--6032923	115	3.3	116	77	8	359	37	13	24	24	1.92
6037403--6037462	11	5.3	11	76	20	52	86	6	1	5	0.75
6037403--6037462	18	3.3	18	77	13	61	86	6	1	5	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93