genome.fa.s190.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  3  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322227--326639	900	4.9	888	83	6	5275	26	23	23	26	2.00
327525--327578	17	3.2	17	84	10	58	22	0	25	51	1.48
328973--329012	13	2.9	14	82	10	55	12	0	10	77	0.99
328968--329013	15	3.2	14	81	12	58	13	2	8	76	1.11
329200--329393	87	2.2	89	88	2	293	40	18	21	20	1.92
329200--329408	88	2.4	86	85	3	274	40	18	21	20	1.91
329329--329584	133	1.9	133	86	3	363	37	17	21	23	1.93
330133--330233	43	2.4	43	85	9	129	34	17	19	27	1.95
330374--330717	33	10.5	32	75	13	265	35	15	18	30	1.92
330374--330717	131	2.6	131	84	7	407	35	15	18	30	1.92
330374--330719	66	5.3	65	80	7	373	34	15	18	30	1.92
331989--332015	10	2.7	10	100	0	54	0	7	0	92	0.38
331989--332033	9	4.9	9	86	2	54	2	4	4	88	0.67
334914--334966	26	2.0	26	88	0	79	28	20	24	26	1.99
337093--337145	26	2.0	26	82	7	63	30	18	20	30	1.97
335638--343449	895	8.8	884	84	4	9239	26	23	23	26	2.00
340645--340697	26	2.0	26	85	0	70	26	20	24	28	1.99
343324--343376	26	2.0	26	88	0	79	26	18	22	32	1.97
344143--344195	26	2.0	26	88	0	79	24	20	24	30	1.99
343502--346002	889	2.9	846	82	7	3021	25	23	24	26	2.00
345009--345061	26	2.0	26	92	0	88	26	20	24	28	1.99
345901--345953	26	2.0	26	88	0	79	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352607--352659	26	2.0	26	96	0	97	26	22	24	26	2.00
358093--358143	26	2.0	26	88	0	75	27	19	21	31	1.97
357345--368148	897	12.1	882	82	6	11698	26	24	23	26	2.00
364266--364318	26	2.0	26	85	0	70	28	20	20	30	1.98
365163--365215	26	2.0	26	92	0	88	28	22	22	26	1.99
366958--367008	26	2.0	26	92	0	84	29	19	21	29	1.98
367242--367330	44	2.0	44	97	0	169	21	14	29	34	1.93
367900--367950	26	2.0	26	84	0	66	29	21	19	29	1.98
372897--372949	26	2.0	26	88	0	79	28	20	22	28	1.99
373643--373698	26	2.2	26	90	6	87	30	21	19	28	1.98
374542--374594	26	2.0	26	92	0	88	26	20	24	28	1.99
378874--378924	26	2.0	25	85	7	68	31	21	19	27	1.97
377493--379985	897	2.8	888	83	4	3183	26	24	23	26	2.00
380977--381029	26	2.0	26	88	0	79	28	20	22	28	1.99
381861--381911	26	2.0	26	88	0	75	29	19	23	27	1.98
380023--382594	896	2.9	889	86	2	3569	26	23	23	26	2.00
382175--383009	414	2.0	415	93	1	1424	29	18	19	32	1.95
383171--383223	26	2.0	26	92	0	88	28	22	22	26	1.99
383962--384014	26	2.0	26	92	0	88	26	20	24	28	1.99
382767--384354	791	2.0	795	87	2	2316	26	25	24	23	2.00
385208--399230	897	15.8	895	84	4	17029	26	24	23	25	2.00
388173--388225	26	2.0	26	88	0	79	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391707--391759	26	2.0	26	92	0	88	28	20	24	26	1.99
392603--392658	26	2.2	26	86	0	76	28	23	17	30	1.97
397902--397954	26	2.0	26	92	0	88	26	16	24	32	1.97
398803--398855	26	2.0	26	92	0	88	26	20	26	26	1.99
397482--402547	889	5.7	846	82	7	4644	25	24	24	25	2.00
401444--401493	26	1.9	26	100	0	100	28	22	26	24	1.99
402335--402387	26	2.0	26	92	0	88	24	18	24	32	1.97
404866--404918	26	2.0	26	85	0	70	32	22	20	24	1.98
405721--405773	26	2.0	26	81	0	61	33	22	18	24	1.97
406623--406675	26	2.0	26	85	0	70	28	18	22	30	1.98
405091--411455	897	6.9	893	75	11	5259	26	24	23	25	2.00
408418--408470	26	2.0	26	92	0	88	26	20	24	28	1.99
409500--409552	26	2.0	26	88	0	79	26	24	22	26	2.00
408599--411457	896	3.2	880	84	6	3780	26	24	23	25	2.00
411276--411328	26	2.0	26	92	0	88	26	20	24	28	1.99
414256--414308	26	2.0	26	85	7	72	30	22	18	28	1.98
413295--424684	898	12.7	894	77	9	9830	26	24	23	26	2.00
415154--415206	26	2.0	26	96	0	97	26	22	24	26	2.00
416944--417006	26	2.4	27	86	7	94	28	17	25	28	1.97
419654--419706	26	2.0	26	88	0	79	28	20	22	28	1.99
420551--420603	26	2.0	26	85	0	70	28	24	20	26	1.99
421447--421499	26	2.0	26	89	7	81	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422333--422385	26	2.0	26	96	0	97	26	22	24	26	2.00
418083--424684	897	7.5	876	84	4	7754	26	23	23	26	2.00
424886--424938	26	2.0	26	88	0	79	28	20	22	28	1.99
432561--432613	26	2.0	26	92	0	88	28	22	22	26	1.99
433458--433510	26	2.0	26	92	0	88	28	20	24	26	1.99
431815--434205	884	2.7	883	88	2	3569	26	23	23	26	2.00
434177--434229	24	2.2	24	93	0	88	26	47	13	13	1.79
434379--434431	26	2.0	26	92	0	88	28	22	22	26	1.99
435117--435169	26	2.0	26	96	0	97	26	22	24	26	2.00
435311--436726	765	1.8	764	88	3	2141	26	23	23	27	2.00
436723--436762	17	2.4	17	87	8	55	25	40	22	12	1.89
436799--436851	26	2.0	27	96	3	99	30	20	26	22	1.98
437672--437724	26	2.0	26	85	7	72	28	15	24	32	1.95
438522--438574	26	2.0	26	88	0	79	30	22	20	26	1.98
440537--440592	26	2.2	26	80	3	69	35	17	19	26	1.94
442222--442274	26	2.0	26	92	0	88	24	24	24	26	2.00
442248--442614	159	2.3	158	84	2	450	25	28	26	19	1.99
443279--443331	26	2.0	26	88	0	79	30	22	20	26	1.98
447422--447471	21	2.4	21	96	0	91	24	32	24	20	1.98
448279--448331	26	2.0	26	88	0	79	26	18	24	30	1.98
450038--450090	26	2.0	26	92	0	88	26	20	26	26	1.99
450565--451052	261	1.9	258	85	6	682	25	33	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451034--451086	26	2.0	26	88	0	79	28	20	22	28	1.99
452794--452846	26	2.0	26	88	0	79	28	20	22	28	1.99
450822--453806	871	3.4	869	84	5	3708	25	24	23	25	2.00
453691--453743	26	2.0	26	96	0	97	26	22	24	26	2.00
460432--460484	26	2.0	26	88	0	79	28	22	20	28	1.99
467487--467539	26	2.0	26	92	0	88	28	22	22	26	1.99
469769--470610	420	2.0	419	94	1	1474	27	21	20	30	1.98
470720--470770	26	2.0	26	92	0	84	27	23	25	23	2.00
471603--471655	26	2.0	26	92	0	88	28	22	22	26	1.99
470189--474403	894	4.7	893	86	2	5782	26	24	23	25	2.00
472495--472544	26	1.9	26	95	0	91	30	24	22	24	1.99
474286--474341	26	2.2	26	83	0	67	30	21	19	28	1.98
480805--480860	26	2.2	26	93	0	94	28	21	23	26	1.99
482476--485230	877	3.1	893	84	5	3616	26	24	24	25	2.00
485091--485143	26	2.0	26	96	0	97	26	18	24	30	1.98
487653--487677	9	2.8	9	100	0	50	28	12	36	24	1.91
490575--493857	869	3.8	863	83	7	4122	26	23	23	26	2.00
494635--494684	26	1.9	26	84	8	66	34	20	20	26	1.96
493998--496576	901	2.9	894	86	2	3553	26	24	23	25	2.00
496435--496487	26	2.0	26	88	0	79	28	20	22	28	1.99
497218--498185	491	2.0	489	86	2	1343	24	29	27	18	1.98
497705--500709	899	3.4	893	87	3	4184	26	24	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499741--499793	26	2.0	26	88	0	79	28	22	20	28	1.99
500635--500687	26	2.0	26	88	0	79	28	20	22	28	1.99
502255--502305	26	2.0	26	92	0	84	29	21	21	27	1.99
500727--506081	908	5.8	897	72	11	4022	26	24	23	25	2.00
502449--502765	161	2.0	161	89	0	490	24	22	30	22	1.99
504182--504234	26	2.0	26	88	0	79	30	20	22	26	1.98
502602--506081	908	3.9	886	85	4	4419	26	23	23	26	2.00
504976--505008	11	3.0	11	90	0	57	18	39	27	15	1.90
505980--506032	26	2.0	26	88	0	79	24	20	26	28	1.99
514088--514139	25	2.0	26	85	3	70	23	21	28	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93