genome.fa.s190.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  84  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13145126--13145160	17	2.1	17	88	0	52	60	0	2	37	1.12
13150795--13150851	30	1.9	30	85	0	78	35	15	22	26	1.94
13163751--13163832	31	2.5	32	83	11	96	30	7	1	60	1.31
13163859--13163897	20	1.9	21	84	5	53	46	0	0	53	1.00
13163857--13163927	30	2.5	30	84	6	94	47	0	0	52	1.00
13163868--13163956	30	3.1	29	82	7	83	43	2	1	52	1.20
13171843--13171878	19	1.9	18	94	5	63	41	5	2	50	1.40
13172015--13172053	19	2.1	19	85	9	53	64	0	2	33	1.08
13172048--13172093	22	2.1	22	88	4	67	52	2	2	43	1.25
13172537--13172587	20	2.4	22	83	9	61	43	5	5	45	1.52
13172569--13172612	23	2.0	23	86	4	63	40	4	9	45	1.56
13174946--13174987	17	2.7	15	79	13	57	47	0	0	52	1.00
13174953--13174992	17	2.3	18	95	4	73	55	0	0	45	0.99
13174942--13175000	15	3.8	15	72	16	57	50	0	0	49	1.00
13174954--13175004	18	2.7	18	71	17	50	50	0	0	49	1.00
13177568--13177592	2	12.5	2	100	0	50	0	52	0	48	1.00
13182572--13182626	16	3.6	16	76	11	53	45	0	0	54	0.99
13194221--13194248	3	9.3	3	100	0	56	35	0	0	64	0.94
13194643--13194713	21	3.5	21	76	3	74	56	5	5	32	1.46
13196132--13196223	31	3.0	31	71	14	84	48	1	1	48	1.15
13196562--13196626	30	2.4	25	82	17	76	53	0	3	43	1.16
13198335--13198425	41	2.2	43	80	11	109	38	2	0	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13198384--13198423	11	3.5	11	83	10	53	32	2	0	65	1.06
13198372--13198425	18	3.1	16	86	10	63	33	1	0	64	1.04
13205251--13205283	16	2.1	16	94	0	57	45	6	15	33	1.70
13208100--13208149	2	25.0	2	83	0	64	50	4	2	44	1.32
13214929--13214972	16	2.8	16	77	16	56	86	4	4	4	0.79
13227746--13227777	6	5.3	6	100	0	64	15	18	34	31	1.93
13232928--13233009	29	2.8	28	75	18	69	40	3	3	52	1.37
13233733--13233777	15	2.9	15	80	3	54	37	0	0	62	0.96
13233741--13233806	10	6.5	10	72	10	53	34	3	0	62	1.11
13233808--13233845	20	1.9	20	88	0	58	47	0	0	52	1.00
13233954--13233983	2	15.5	2	93	6	53	46	0	0	53	1.00
13248940--13248976	16	2.2	17	90	4	58	43	2	16	37	1.62
13249147--13249234	29	3.0	29	86	1	104	36	6	1	55	1.34
13249153--13249235	30	2.8	30	87	1	105	38	6	0	55	1.25
13257687--13257719	15	2.1	16	88	5	50	45	0	3	51	1.16
13260164--13260216	22	2.4	24	81	15	69	54	0	0	45	0.99
13260962--13261000	17	2.3	17	86	8	53	53	0	0	46	1.00
13262204--13262252	21	2.3	21	96	0	89	51	16	8	24	1.71
13262623--13262692	29	2.3	29	79	13	79	54	5	4	35	1.44
13264136--13264160	7	3.6	7	100	0	50	0	12	0	88	0.53
13264216--13264248	14	2.4	14	95	5	59	18	6	12	63	1.48
13264308--13264379	33	2.2	32	78	11	85	61	2	4	31	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13271068--13271262	100	2.0	100	91	0	318	38	12	17	31	1.87
13279484--13279534	22	2.4	21	78	12	59	70	0	0	29	0.87
13279666--13279706	21	2.1	19	86	9	55	56	4	0	39	1.21
13281333--13281372	20	2.0	20	90	9	64	57	0	0	42	0.98
13286202--13286230	2	14.5	2	100	0	58	51	0	0	48	1.00
13290093--13290121	2	14.5	2	100	0	58	0	48	0	51	1.00
13302614--13302674	26	2.4	24	73	10	59	55	3	0	40	1.16
13302903--13302963	12	4.6	13	74	22	56	67	0	0	32	0.91
13302902--13302957	16	3.7	16	79	20	75	66	0	0	33	0.92
13302905--13302981	24	3.2	23	78	7	82	64	0	0	35	0.93
13302902--13302963	28	2.2	27	88	11	97	66	0	0	33	0.92
13304415--13304465	13	3.8	13	77	15	50	64	0	0	35	0.94
13304512--13304579	33	2.1	33	81	10	79	52	1	0	45	1.09
13310201--13310233	17	1.9	17	88	11	50	48	0	0	51	1.00
13320363--13320418	24	2.3	25	84	3	69	55	0	3	41	1.17
13324633--13324657	11	2.3	11	100	0	50	24	20	8	48	1.76
13332528--13332566	11	3.5	11	82	0	51	2	15	0	82	0.79
13340938--13340984	19	2.5	20	79	10	62	40	0	0	59	0.97
13340952--13340981	10	3.1	10	90	9	53	40	0	0	60	0.97
13350132--13350198	28	2.5	28	79	13	70	26	1	1	70	1.05
13350155--13350198	20	2.2	19	84	8	52	25	2	0	72	0.96
13350139--13350224	32	2.6	33	80	10	88	29	1	4	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13351326--13351362	2	18.5	2	100	0	74	51	48	0	0	1.00
13351788--13351838	23	2.2	23	96	0	93	45	5	23	25	1.75
13360339--13360385	23	2.0	23	95	0	85	21	19	14	44	1.86
13365048--13365197	78	1.9	78	88	0	228	32	31	6	30	1.83
13365315--13365461	52	2.8	52	88	2	197	25	22	8	43	1.81
13376950--13376976	13	2.1	13	100	0	54	48	22	22	7	1.75
13386593--13386617	9	2.8	9	100	0	50	24	0	44	32	1.54
13404012--13404083	36	2.0	36	100	0	144	36	16	11	36	1.84
13403876--13404219	172	2.0	172	98	0	670	34	19	9	36	1.84
13412014--13412073	28	2.1	29	90	3	95	35	5	0	60	1.19
13412438--13412484	18	2.6	18	77	12	51	42	6	0	51	1.27
13413221--13413346	66	1.9	65	93	1	216	25	19	12	42	1.86
13416603--13416627	3	8.3	3	100	0	50	0	32	0	68	0.90
13417728--13417774	18	2.6	18	100	0	94	36	31	12	19	1.89
13422376--13422463	34	2.9	30	76	17	85	38	3	1	56	1.23
13439661--13439685	2	12.5	2	100	0	50	52	48	0	0	1.00
13439694--13439750	2	28.5	2	92	0	96	3	0	45	50	1.18
13440923--13440953	13	2.3	14	94	5	55	0	0	9	90	0.46
13440922--13440961	18	2.2	18	86	8	55	2	0	12	85	0.71
13449311--13449420	32	3.5	31	71	13	91	43	0	2	53	1.15
13456217--13456258	15	2.8	15	88	0	66	45	2	50	2	1.27
13456232--13456281	21	2.5	20	83	3	55	42	0	54	4	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13458445--13458520	40	1.9	40	97	0	143	27	11	21	39	1.88
13460091--13460127	2	18.5	2	88	0	56	43	0	5	51	1.24
13463786--13463815	4	7.5	4	100	0	60	50	23	0	26	1.50
13463813--13463837	2	12.5	2	100	0	50	52	0	0	48	1.00
13464563--13464588	2	13.0	2	100	0	52	50	0	0	50	1.00
13465031--13465063	16	2.0	17	88	5	50	15	9	6	69	1.34
13465142--13465167	2	13.0	2	100	0	52	50	0	0	50	1.00
13465206--13465233	2	14.0	2	100	0	56	50	0	0	50	1.00
13465123--13465248	66	1.9	66	93	4	220	51	11	4	32	1.58
13470252--13470283	13	2.4	14	85	15	50	28	3	0	68	1.04
13471632--13471692	31	1.9	31	83	3	77	47	3	0	49	1.18
13471668--13471744	32	2.4	34	75	14	83	49	0	1	49	1.09
13472395--13472465	20	3.3	20	75	16	63	45	0	2	52	1.15
13472520--13472544	13	1.9	13	100	0	50	20	8	8	64	1.46
13473129--13473171	21	2.0	21	86	0	59	25	2	9	62	1.37
13473365--13473421	14	4.2	13	79	20	55	56	1	0	42	1.10
13473729--13473822	17	5.8	16	75	18	79	54	2	0	43	1.12
13483402--13483452	23	2.2	23	86	6	68	58	0	0	41	0.98
13483774--13483818	22	2.0	22	83	8	56	40	0	2	57	1.11
13484440--13484482	6	7.2	6	89	0	68	2	30	13	53	1.53
13484440--13484489	12	4.2	12	89	0	64	4	28	14	54	1.58
13491204--13491383	90	2.0	91	85	3	247	42	11	18	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13493941--13493975	18	1.9	18	88	0	52	54	2	0	42	1.15
13495949--13495999	20	2.5	21	96	3	95	50	0	0	49	1.00
13495983--13496025	16	2.8	16	82	3	52	58	0	0	41	0.98
13495988--13496047	26	2.3	26	83	13	72	60	1	0	38	1.07
13496025--13496064	16	2.7	15	88	11	64	60	2	0	37	1.11
13497710--13497755	24	1.9	24	90	0	74	28	32	10	28	1.91
13503690--13503748	13	4.4	13	73	14	57	49	0	0	50	1.00
13504426--13504499	32	2.3	32	83	2	87	48	1	0	50	1.09
13510595--13510620	2	13.0	2	100	0	52	50	0	0	50	1.00
13510806--13510882	25	3.3	22	79	12	82	37	0	0	62	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93