genome.fa.s190.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  87  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14087836--14087873	18	2.1	18	85	9	51	26	2	5	65	1.27
14089811--14092230	815	3.0	804	85	6	3161	42	5	6	44	1.56
14091904--14091963	15	4.2	14	74	15	52	38	0	3	58	1.15
14091577--14092075	270	1.8	270	91	0	829	43	4	6	45	1.50
14092292--14092318	14	1.9	14	100	0	54	59	0	3	37	1.15
14093818--14093860	20	2.2	19	84	12	52	44	0	0	55	0.99
14093957--14093984	8	3.5	8	100	0	56	78	0	0	21	0.75
14098754--14098795	18	2.3	18	80	8	50	14	26	14	45	1.83
14099578--14099614	18	2.1	18	94	0	65	40	2	16	40	1.62
14099607--14099663	17	3.2	17	69	26	55	43	12	8	35	1.73
14099609--14099666	18	3.2	18	69	26	59	43	12	8	36	1.73
14099591--14099666	36	2.1	36	100	0	152	42	10	10	36	1.74
14110701--14110733	17	2.0	17	88	5	50	48	0	0	51	1.00
14111558--14111607	14	3.7	14	76	7	50	48	0	0	52	1.00
14111560--14111632	12	6.2	12	77	19	55	43	0	0	56	0.99
14111584--14111631	22	2.2	22	92	7	80	35	0	0	64	0.94
14111583--14111653	17	4.7	16	73	18	55	39	0	1	59	1.06
14122062--14122100	2	19.5	2	94	0	69	0	0	46	53	1.00
14125568--14125633	33	2.0	33	85	5	89	46	0	1	51	1.10
14125608--14125638	16	2.0	16	93	6	55	41	0	6	51	1.27
14125613--14125657	14	3.1	14	83	6	54	35	0	8	55	1.31
14125635--14125700	22	3.0	22	81	2	69	30	1	3	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14132403--14132437	2	17.5	2	100	0	70	51	0	48	0	1.00
14133755--14133789	15	2.3	15	90	0	52	77	11	0	11	1.00
14138360--14138401	9	4.7	9	90	0	57	47	0	52	0	1.00
14141019--14141061	2	21.5	2	100	0	86	48	0	0	51	1.00
14141611--14141647	2	18.5	2	94	0	65	48	2	0	48	1.15
14143237--14143311	22	3.4	22	100	0	150	24	21	12	42	1.86
14150393--14150423	16	1.9	16	93	0	53	80	3	16	0	0.83
14153940--14153980	21	2.0	21	100	0	82	51	0	0	48	1.00
14163772--14163895	57	2.2	57	80	2	133	20	15	41	23	1.90
14168741--14168902	82	2.0	82	98	0	315	32	20	8	37	1.84
14169847--14169879	5	6.8	5	89	6	50	36	39	24	0	1.56
14176769--14176804	3	12.0	3	100	0	72	66	0	0	33	0.92
14181950--14181974	11	2.3	11	100	0	50	28	8	8	56	1.57
14186407--14186471	26	2.6	23	77	17	67	46	0	1	52	1.10
14186470--14186517	23	2.1	22	85	11	62	43	4	0	52	1.20
14188096--14188141	19	2.4	20	82	10	69	63	0	0	36	0.95
14199398--14199428	2	15.5	2	93	0	53	3	48	0	48	1.17
14208780--14208820	18	2.4	17	83	4	55	60	0	0	39	0.96
14209465--14209523	25	2.3	27	82	11	70	50	0	1	47	1.11
14210231--14210280	4	12.8	4	76	19	52	50	2	0	48	1.12
14210231--14210256	13	2.0	13	100	0	52	53	0	0	46	1.00
14210544--14210579	19	1.9	18	88	5	54	44	5	8	41	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14210574--14210635	27	2.3	27	77	5	72	48	0	0	51	1.00
14210585--14210627	18	2.4	18	92	0	68	55	0	0	44	0.99
14210618--14210654	15	2.5	15	90	0	56	45	0	0	54	1.00
14213867--14213895	3	9.7	3	100	0	58	31	0	0	68	0.89
14216679--14216729	25	2.0	25	96	0	93	13	15	25	45	1.83
14218331--14218684	54	6.6	54	73	9	168	33	18	21	26	1.96
14218422--14218690	108	2.5	106	81	4	281	33	19	20	27	1.96
14218394--14218685	162	1.8	162	81	4	374	33	19	19	27	1.96
14218920--14219521	297	2.0	297	98	0	1159	27	10	19	43	1.83
14230863--14230893	12	2.6	12	94	0	53	38	25	25	9	1.86
14231541--14231567	13	2.1	13	100	0	54	22	7	0	70	1.12
14237123--14237156	2	17.0	2	100	0	68	50	0	0	50	1.00
14237378--14237414	14	2.8	14	88	8	51	54	5	0	40	1.24
14251776--14251818	20	2.1	22	87	12	65	39	2	9	48	1.48
14253775--14253877	48	2.1	48	80	0	116	31	22	21	25	1.98
14256577--14256732	80	2.0	80	92	2	260	30	7	16	46	1.74
14264921--14264952	16	2.0	16	100	0	64	37	0	18	43	1.51
14274481--14274510	14	2.1	14	93	0	51	43	10	16	30	1.81
14274522--14274571	23	2.2	23	88	0	73	32	14	28	26	1.94
14290643--14290681	2	20.0	2	84	5	53	56	0	0	43	0.99
14292965--14293014	25	2.0	25	88	0	73	32	14	28	26	1.94
14293723--14293757	3	11.7	3	100	0	70	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14298664--14298688	3	8.3	3	100	0	50	68	0	0	32	0.90
14298848--14298886	3	13.0	3	94	0	69	64	0	33	2	1.08
14305777--14305814	12	3.2	12	77	7	51	63	0	0	36	0.95
14307023--14307052	3	9.7	3	92	7	51	33	0	30	36	1.58
14309282--14309353	27	2.7	27	95	0	126	18	33	29	19	1.95
14318322--14318377	26	2.2	25	81	9	67	46	0	3	50	1.19
14318331--14318381	26	1.9	27	92	4	86	43	0	5	50	1.26
14325515--14325561	11	4.1	11	78	10	58	65	0	2	31	1.04
14325595--14325734	37	3.6	39	69	20	105	47	2	1	48	1.22
14326853--14326877	2	12.5	2	100	0	50	0	48	0	52	1.00
14326877--14326905	2	14.5	2	100	0	58	48	0	0	51	1.00
14327039--14327093	25	2.2	24	78	9	58	40	7	12	40	1.71
14327259--14327288	9	3.2	9	95	4	51	63	0	0	36	0.95
14327261--14327290	10	3.1	10	95	4	53	63	0	0	36	0.95
14327245--14327294	26	1.9	26	84	8	66	58	0	0	42	0.98
14328455--14328495	21	1.9	22	90	5	66	46	2	0	51	1.14
14339134--14339167	2	17.0	2	100	0	68	50	0	0	50	1.00
14341376--14341439	11	5.5	11	78	15	58	42	0	3	54	1.16
14341404--14341449	24	2.0	23	87	8	67	41	0	4	54	1.20
14341595--14341643	20	2.2	21	82	13	55	61	0	0	38	0.96
14345749--14345785	2	18.5	2	100	0	74	51	0	0	48	1.00
14346897--14346924	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14351698--14351797	9	11.1	9	71	15	64	52	1	2	45	1.19
14351731--14351796	19	3.6	18	73	18	55	53	1	3	42	1.25
14351990--14352024	18	1.9	18	88	0	52	51	5	5	37	1.50
14361252--14361323	24	3.0	24	95	4	137	56	18	8	16	1.64
14361252--14361334	23	3.5	23	88	8	123	59	15	8	16	1.60
14361259--14361334	24	3.2	23	85	5	107	61	15	6	15	1.53
14366457--14366493	2	18.5	2	100	0	74	48	0	0	51	1.00
14370330--14370356	2	13.5	2	100	0	54	51	0	0	48	1.00
14384790--14384830	7	6.1	7	83	8	50	75	2	0	21	0.92
14391071--14391103	10	3.4	10	87	4	50	21	6	0	72	1.05
14401259--14401285	14	1.9	14	100	0	54	77	7	0	14	0.97
14401322--14401892	175	3.2	175	89	3	883	33	13	7	45	1.72
14401322--14401900	59	9.8	59	88	4	810	34	12	7	45	1.72
14401951--14401994	17	2.5	18	85	7	63	75	4	6	13	1.17
14402016--14402050	12	3.0	12	95	4	63	77	8	0	14	0.99
14402491--14402555	31	2.1	31	85	5	87	30	24	21	23	1.99
14402992--14403029	9	4.5	8	90	9	58	84	0	2	13	0.73
14402993--14403026	17	1.9	18	94	5	61	82	0	2	14	0.79
14403052--14403156	16	6.6	16	69	20	60	64	7	0	27	1.20
14402999--14403152	79	2.0	79	79	8	172	65	5	1	27	1.23
14402994--14403152	83	2.0	78	79	14	171	66	5	1	27	1.22
14403022--14403147	35	3.6	34	74	18	100	62	6	0	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14403217--14403293	20	3.8	20	96	0	136	19	29	29	20	1.97
14403390--14403437	1	48.0	1	78	0	51	0	0	10	89	0.48
14403382--14403434	8	6.9	8	85	8	74	0	0	13	86	0.56
14403389--14403426	11	3.5	11	89	3	60	0	0	13	86	0.56
14403382--14403432	22	2.3	22	89	3	75	0	0	13	86	0.58
14403444--14403940	42	12.0	41	86	7	650	37	20	18	23	1.94
14403444--14403940	82	6.0	81	85	6	642	37	20	18	23	1.94
14409264--14409466	100	2.0	99	93	4	347	33	10	8	47	1.68
14409323--14409410	42	2.1	42	95	2	160	31	7	9	51	1.63
14409007--14409367	58	6.4	56	96	3	626	35	11	7	44	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93