genome.fa.s190.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  65  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9079932--9079992	12	5.1	11	84	13	68	52	3	0	44	1.17
9081446--9081479	18	1.9	17	88	5	50	52	0	14	32	1.42
9083146--9083207	22	2.8	22	85	0	79	27	0	19	53	1.45
9083174--9083202	14	2.0	15	93	6	51	37	0	6	55	1.27
9083154--9083208	15	3.7	15	71	22	53	27	0	18	54	1.44
9083288--9083370	41	2.0	41	83	0	103	22	2	27	46	1.64
9083815--9083848	3	11.7	3	93	6	61	29	0	0	70	0.87
9083996--9084033	9	4.0	10	83	10	53	31	2	0	65	1.06
9084000--9084033	3	11.0	3	87	6	50	32	2	0	64	1.08
9083996--9084033	19	2.0	19	94	0	67	31	2	0	65	1.06
9087562--9087612	22	2.3	22	86	10	68	60	1	0	37	1.08
9087562--9087612	23	2.3	22	90	10	77	60	1	0	37	1.08
9087547--9087600	10	4.9	10	77	18	54	57	1	1	38	1.20
9087547--9087615	12	6.0	11	79	14	52	59	1	1	37	1.15
9092642--9092704	30	2.1	30	91	5	101	23	26	12	36	1.91
9102080--9102110	16	1.9	16	93	0	53	32	0	19	48	1.49
9102910--9102991	21	3.9	21	71	10	69	15	1	20	62	1.40
9104934--9104974	11	3.9	11	76	23	52	29	0	7	63	1.21
9105035--9105080	19	2.4	18	82	10	56	65	4	2	28	1.23
9108431--9108473	21	2.1	20	82	4	50	25	2	20	51	1.60
9119677--9119722	17	2.5	19	79	10	51	41	4	4	50	1.42
9120784--9120813	3	10.0	3	92	0	51	66	3	0	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9121000--9121036	3	12.7	3	94	5	67	67	0	0	32	0.91
9121587--9121646	11	5.1	11	76	13	57	55	3	0	41	1.16
9121673--9121711	18	2.1	19	90	4	62	33	0	2	64	1.08
9121749--9121788	13	3.1	13	81	0	53	57	0	0	42	0.98
9122547--9122578	11	2.9	11	90	0	55	46	0	0	53	1.00
9122834--9122882	11	4.3	11	82	10	62	46	2	0	51	1.12
9122836--9122880	24	2.0	24	91	8	76	51	2	0	46	1.13
9122834--9122915	18	4.7	18	73	10	64	56	1	0	42	1.07
9122853--9122917	29	2.3	29	82	10	73	61	0	0	38	0.96
9122834--9122914	11	7.1	11	71	16	58	55	1	0	43	1.07
9122976--9123018	20	2.2	20	86	0	59	53	0	0	46	1.00
9123622--9123678	24	2.4	23	77	8	60	59	0	1	38	1.08
9123614--9123665	18	2.9	18	77	11	61	65	0	1	32	1.04
9123814--9123869	10	5.5	11	71	16	57	66	0	0	33	0.92
9123813--9123869	19	2.8	20	80	17	73	64	0	0	35	0.93
9124069--9124094	11	2.4	11	100	0	52	42	0	0	57	0.98
9126704--9126745	20	2.1	20	90	0	66	38	9	7	45	1.64
9127344--9127414	36	2.0	36	100	0	142	61	12	5	19	1.50
9126428--9127796	678	2.0	677	84	4	1762	46	6	8	38	1.59
9127868--9128645	391	2.0	390	87	3	1138	40	5	8	45	1.58
9130147--9130306	59	2.7	58	89	3	241	38	11	4	45	1.61
9130389--9130421	16	2.0	17	88	5	50	69	3	0	27	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9131165--9131195	16	1.9	16	93	0	53	70	3	6	19	1.22
9131183--9131262	27	2.9	27	78	12	74	57	2	6	33	1.37
9131222--9131262	15	2.6	16	78	14	50	58	0	2	39	1.11
9131255--9131290	15	2.4	15	85	0	54	75	5	0	19	1.00
9131488--9131771	43	6.7	41	80	5	264	41	20	14	23	1.89
9143282--9143542	58	4.5	58	77	12	245	38	14	4	42	1.68
9143277--9143551	116	2.4	115	80	10	287	38	14	5	42	1.67
9143278--9143574	58	5.2	56	75	11	237	38	12	5	43	1.66
9145354--9145412	16	3.1	19	81	16	61	47	1	0	50	1.11
9157096--9157200	52	2.0	52	100	0	210	45	19	20	15	1.85
9159228--9159280	22	2.6	20	77	13	63	56	1	0	41	1.10
9159630--9159688	21	2.9	20	69	2	55	54	1	0	44	1.10
9174677--9174711	12	2.8	12	91	4	52	51	0	5	42	1.25
9175140--9175214	34	2.2	35	82	2	89	58	6	1	33	1.32
9176325--9176351	3	9.0	3	100	0	54	66	0	0	33	0.92
9177148--9177222	30	2.5	29	78	10	80	48	5	1	45	1.33
9186552--9186639	44	2.0	44	82	8	108	30	12	17	39	1.86
9187026--9187070	15	3.0	15	84	9	56	13	4	2	80	0.97
9187579--9187623	21	2.2	20	84	4	54	17	0	17	64	1.29
9188130--9188170	13	3.2	13	93	3	66	26	0	14	58	1.37
9190482--9190526	22	2.0	23	82	4	56	48	8	4	37	1.55
9198027--9198135	18	6.1	18	70	16	91	29	4	31	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9198478--9198515	6	6.3	6	100	0	76	34	50	0	15	1.45
9202460--9202570	39	2.8	39	87	1	141	21	60	3	14	1.49
9202507--9202591	20	4.3	20	68	18	61	22	62	1	14	1.38
9202707--9202747	19	2.1	20	86	13	59	7	24	0	68	1.15
9203922--9203952	13	2.4	13	94	0	53	74	0	0	25	0.82
9204234--9204285	19	2.7	20	82	8	72	53	26	1	17	1.54
9207539--9207597	10	5.9	10	69	15	50	11	13	8	66	1.45
9211095--9211136	20	2.1	20	95	0	75	66	9	19	4	1.38
9220780--9220846	28	2.4	27	78	9	62	28	7	16	47	1.73
9220876--9220942	28	2.4	28	80	9	82	31	17	13	37	1.89
9220832--9220963	28	4.8	26	75	13	81	30	16	16	36	1.91
9224046--9224071	13	2.0	13	100	0	52	23	15	23	38	1.92
9225743--9225819	30	2.6	29	81	8	100	32	18	23	25	1.97
9224818--9226672	966	2.0	939	82	6	2237	33	9	23	33	1.87
9229491--9229563	30	2.5	28	73	16	69	61	15	1	21	1.41
9232117--9232213	48	2.0	48	93	0	167	30	16	16	36	1.91
9234785--9234876	14	6.7	14	77	8	82	32	1	21	44	1.60
9234797--9234856	21	3.0	21	85	4	79	38	1	18	41	1.60
9234785--9234876	7	13.4	7	71	13	57	32	1	21	44	1.60
9234797--9234856	13	4.5	13	80	14	59	38	1	18	41	1.60
9235415--9235498	35	2.4	35	85	0	123	28	10	13	47	1.76
9235485--9235535	25	2.0	25	85	7	68	23	7	15	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9236058--9236114	11	4.8	11	77	14	60	1	22	1	73	1.02
9236051--9236115	25	2.7	24	83	9	78	1	21	1	75	0.97
9237759--9237851	46	2.0	47	87	4	134	40	11	13	33	1.82
9237764--9238028	49	5.5	47	78	7	232	42	13	12	32	1.80
9237957--9238107	79	1.9	79	88	0	230	41	14	11	32	1.81
9238006--9238071	30	2.2	30	94	2	116	37	16	12	33	1.86
9238037--9238298	49	5.5	48	77	12	227	44	11	11	32	1.76
9237911--9238297	127	2.9	128	80	10	390	43	12	11	32	1.77
9238098--9238267	92	1.8	92	85	7	238	45	10	11	32	1.74
9238542--9238603	31	2.0	31	90	0	97	32	14	12	40	1.84
9239536--9239618	12	6.8	12	70	16	55	2	18	3	75	1.05
9239562--9239613	25	2.1	25	82	7	61	3	21	3	71	1.18
9241607--9241659	29	2.0	27	82	17	67	5	13	0	81	0.86
9241605--9241677	38	1.9	37	83	2	92	5	19	0	75	0.99
9241625--9241677	19	2.8	18	77	8	61	5	20	0	73	1.03
9242195--9242232	12	2.9	13	92	7	60	10	18	0	71	1.14
9242186--9242245	14	4.5	13	83	12	68	6	18	0	75	1.02
9242226--9242263	15	2.4	16	86	8	51	2	18	0	78	0.86
9242216--9242264	16	2.9	17	80	20	59	4	18	0	77	0.92
9245205--9245283	37	2.1	37	80	0	86	39	11	16	32	1.84
9247292--9247334	7	6.1	7	83	0	50	23	0	34	41	1.55
9247292--9247334	21	2.0	21	86	8	61	23	0	34	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9248164--9248236	28	2.6	28	82	2	85	34	8	13	43	1.74
9248172--9248310	28	5.0	28	72	11	88	31	11	12	43	1.79
9249189--9249216	5	5.6	5	100	0	56	0	35	0	64	0.94
9255117--9255154	2	19.0	2	100	0	76	50	0	0	50	1.00
9255170--9255195	2	13.0	2	100	0	52	50	50	0	0	1.00
9262308--9262361	27	2.0	27	88	0	81	55	1	0	42	1.10
9262322--9262363	14	3.1	14	77	16	52	57	0	0	42	0.99
9263889--9263929	15	2.7	16	81	11	50	34	0	2	63	1.08
9267537--9267613	18	4.5	17	77	9	68	33	5	24	36	1.78
9267587--9267635	18	2.7	18	87	0	62	36	6	24	32	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93