genome.fa.s190.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  50  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6298352--6298410	28	2.1	28	96	0	109	52	18	10	18	1.73
6298362--6298417	28	2.2	24	81	15	60	55	19	10	14	1.68
6302012--6302095	39	2.2	39	88	0	123	14	2	64	19	1.39
6302619--6302667	25	1.9	26	91	4	82	46	2	10	40	1.49
6304729--6304770	13	3.2	13	83	12	50	47	2	0	50	1.14
6306044--6306095	27	1.9	27	88	7	79	25	5	38	30	1.79
6306440--6306564	18	6.9	18	71	13	96	32	33	4	28	1.78
6306436--6306504	21	3.4	20	69	15	61	31	31	4	31	1.77
6306464--6306565	33	3.0	34	80	5	125	35	31	4	28	1.78
6314871--6314924	22	2.4	24	84	9	69	50	0	0	50	1.00
6314906--6314954	26	1.9	25	88	12	73	55	0	0	44	0.99
6315219--6315291	36	2.0	36	89	0	110	31	12	12	43	1.79
6315532--6315616	22	3.7	23	69	23	72	55	1	0	43	1.07
6318198--6318241	14	3.2	13	81	15	52	77	2	2	18	0.98
6318661--6318698	13	2.9	13	84	7	51	78	2	0	18	0.86
6320110--6320139	13	2.3	13	94	0	51	43	10	26	20	1.83
6324269--6324318	21	2.4	21	90	6	75	46	10	22	22	1.81
6331196--6331245	20	2.5	20	66	0	55	56	4	10	30	1.51
6333145--6333188	19	2.3	19	84	7	54	68	9	9	13	1.40
6333246--6333382	4	34.5	4	68	16	63	63	4	2	29	1.28
6333244--6333330	19	4.5	20	77	17	78	64	3	2	29	1.22
6333235--6333362	10	13.1	10	71	20	53	63	3	2	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6333393--6333418	11	2.4	11	100	0	52	76	0	0	23	0.78
6333729--6334039	41	7.5	41	91	1	451	36	22	17	24	1.94
6333729--6334039	83	3.8	83	91	0	462	36	22	17	24	1.94
6333729--6334039	124	2.5	124	90	1	471	36	22	17	24	1.94
6333974--6334104	65	2.0	65	95	0	235	35	26	15	22	1.93
6334039--6334296	41	6.2	41	92	2	426	36	24	16	22	1.94
6333895--6334187	148	2.0	148	91	2	482	36	24	16	23	1.94
6334039--6334296	83	3.1	83	93	1	437	36	24	16	22	1.94
6333808--6334270	231	2.0	231	92	1	768	36	23	16	23	1.94
6335583--6335621	20	2.0	20	90	10	62	7	20	0	71	1.10
6340002--6340040	16	2.4	16	86	4	51	41	0	7	51	1.31
6339917--6340417	118	4.3	118	87	3	665	36	13	6	42	1.70
6339917--6340420	59	8.6	58	82	5	586	36	13	6	43	1.70
6340474--6340549	22	3.6	22	70	20	63	77	1	5	15	1.01
6340475--6340534	11	5.8	10	82	7	59	81	1	3	13	0.89
6340463--6340535	6	11.7	6	73	13	58	79	1	5	13	0.97
6340475--6340535	17	3.6	17	78	10	63	81	1	3	13	0.88
6340558--6340591	4	8.8	4	87	6	52	76	2	0	20	0.92
6340558--6340591	15	2.2	16	94	5	61	76	2	0	20	0.92
6341424--6341483	19	3.4	18	71	11	52	73	8	8	10	1.26
6341541--6341663	4	30.0	4	71	15	65	64	3	2	30	1.22
6341496--6341564	14	4.8	15	69	25	51	65	1	4	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6341539--6341588	19	2.6	21	81	15	63	64	2	2	32	1.16
6341536--6341660	21	5.8	22	67	23	70	64	3	2	30	1.22
6341672--6341716	17	2.6	17	86	10	56	77	4	2	15	1.02
6350590--6350720	8	15.9	8	82	12	99	68	1	12	16	1.28
6350590--6350715	9	15.0	9	83	10	119	68	1	12	17	1.29
6350594--6350721	16	7.8	16	79	15	120	69	1	12	16	1.26
6351268--6351494	79	2.9	79	84	0	301	37	7	22	33	1.81
6352141--6352368	43	5.3	43	79	6	203	25	14	13	46	1.80
6352141--6352377	87	2.7	86	79	9	257	25	13	13	46	1.81
6352141--6352378	130	1.8	130	82	3	309	25	13	14	46	1.81
6352171--6352413	130	1.9	130	81	1	299	26	13	14	45	1.82
6352874--6352907	15	2.4	14	90	5	50	17	2	11	67	1.34
6353310--6353355	21	2.2	21	85	11	60	23	2	4	69	1.17
6353535--6353572	3	12.7	3	100	0	76	68	0	0	31	0.90
6353802--6353902	47	2.1	46	84	10	132	56	6	13	22	1.61
6354548--6356541	339	5.9	339	75	5	1476	31	16	18	33	1.93
6354548--6356541	678	2.9	672	77	4	1936	31	16	18	33	1.93
6358076--6358128	16	3.2	16	73	21	56	69	0	16	13	1.18
6360074--6360154	41	2.0	40	87	2	117	40	14	7	37	1.74
6369717--6369761	18	2.5	18	92	7	74	53	8	17	20	1.70
6375367--6375410	22	2.0	22	95	0	79	43	13	11	31	1.80
6381702--6381740	11	3.5	11	78	0	51	41	15	5	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6381700--6381744	22	2.0	22	100	0	90	42	17	4	35	1.70
6388194--6388239	18	2.5	17	83	13	56	67	0	2	30	1.03
6388391--6388420	16	1.9	16	93	6	53	73	0	0	26	0.84
6388589--6388621	2	16.5	2	100	0	66	48	0	0	51	1.00
6389843--6389884	23	1.9	22	85	9	59	9	4	7	78	1.08
6390535--6390588	16	3.4	16	81	0	63	38	11	5	44	1.63
6391456--6391502	24	2.0	24	83	8	60	42	2	0	55	1.12
6393625--6393691	9	7.4	9	68	18	50	16	2	1	79	0.94
6393623--6393694	15	4.4	16	80	14	76	18	2	1	77	0.96
6393628--6393695	33	1.9	33	85	11	91	17	2	2	76	1.04
6394188--6394232	23	1.9	24	86	13	67	33	0	2	64	1.06
6394281--6394321	18	2.3	18	86	0	55	31	0	2	65	1.05
6395169--6395199	13	2.5	12	90	10	53	9	0	0	90	0.46
6397116--6397141	3	8.7	3	100	0	52	65	0	0	34	0.93
6399295--6399341	18	2.5	20	86	6	62	6	19	0	74	1.03
6400315--6400460	61	2.4	61	82	4	170	38	7	15	38	1.76
6399956--6400391	208	2.1	207	80	6	470	36	7	17	38	1.78
6400587--6400868	128	2.2	129	81	5	322	43	4	9	42	1.59
6401411--6401702	154	1.9	154	84	2	390	38	3	17	40	1.67
6401628--6402183	132	4.3	129	79	6	498	37	6	17	38	1.75
6401722--6402237	130	4.0	131	78	8	360	38	6	16	38	1.75
6402286--6402325	16	2.5	17	88	8	57	42	5	2	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6402677--6402762	44	2.0	44	88	0	127	52	3	17	26	1.61
6403448--6403735	149	2.0	142	83	6	362	39	16	11	32	1.84
6403653--6404096	243	1.8	242	80	7	533	35	14	13	36	1.86
6407401--6407440	16	2.5	16	88	8	55	50	2	5	42	1.37
6411863--6411901	19	2.1	19	90	0	60	43	0	0	56	0.99
6412051--6412162	32	3.5	31	72	13	102	41	5	5	48	1.49
6412488--6412540	21	2.5	21	87	6	72	50	0	5	43	1.25
6413419--6413456	17	2.2	18	85	4	51	47	10	2	39	1.52
6413673--6413717	22	2.2	19	88	11	63	51	4	2	42	1.34
6421875--6421907	2	16.5	2	93	0	57	54	0	0	45	0.99
6431399--6431443	2	23.0	2	81	4	56	46	2	2	48	1.26
6431622--6431646	1	25.0	1	100	0	50	0	0	0	100	0.00
6432822--6432872	11	4.5	11	80	9	50	33	1	0	64	1.05
6432833--6432887	26	2.2	25	83	3	65	32	1	1	63	1.15
6435091--6435131	21	1.9	21	85	5	55	31	12	12	43	1.79
6435288--6435352	32	2.0	32	100	0	130	26	15	15	43	1.86
6436283--6436331	19	2.4	22	73	20	59	61	10	4	24	1.45
6436329--6436371	18	2.4	18	78	21	54	58	23	4	13	1.55
6437356--6437385	8	3.8	8	100	0	60	40	10	23	26	1.86
6439069--6439112	20	2.4	19	88	11	65	61	11	6	20	1.52
6439221--6439317	22	4.8	21	73	17	80	80	3	8	8	1.00
6439221--6439316	23	4.2	22	79	17	81	80	3	8	8	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6439276--6439316	6	6.8	6	91	8	66	82	0	14	2	0.76
6439232--6439316	17	4.9	17	72	11	64	80	3	9	7	1.02
6440264--6440310	18	2.4	21	89	10	73	10	10	4	74	1.20
6440264--6440310	20	2.4	20	85	3	69	10	10	4	74	1.20
6440334--6440411	6	12.8	6	84	8	95	65	5	1	28	1.22
6440334--6440411	31	2.5	31	89	6	115	65	5	1	28	1.22
6440335--6440405	25	2.9	24	87	4	88	66	5	1	26	1.22
6443349--6443402	5	11.0	5	90	9	85	57	0	0	42	0.98
6450709--6450840	41	3.2	39	75	14	108	47	0	3	47	1.25
6450713--6450762	17	2.9	17	77	19	50	46	0	4	50	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93