genome.fa.s190.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  89  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14591076--14591126	24	2.2	22	80	10	57	41	1	11	45	1.52
14591637--14591683	23	2.0	23	84	8	60	55	0	0	44	0.99
14591723--14591772	19	2.5	19	84	12	57	42	0	0	58	0.98
14592527--14592580	27	2.0	27	100	0	108	33	14	33	18	1.92
14592777--14592861	41	2.1	41	93	0	143	34	8	24	32	1.85
14592795--14592861	20	3.3	20	62	4	53	29	7	25	37	1.83
14603707--14603771	23	2.8	24	76	6	62	40	12	7	40	1.71
14612015--14612104	45	2.0	45	93	0	153	25	12	36	25	1.91
14612970--14613103	69	1.9	69	90	0	214	16	20	32	30	1.95
14613360--14613416	21	2.8	21	84	5	73	36	3	0	59	1.14
14617846--14617901	25	2.2	25	81	9	60	41	7	5	46	1.54
14617554--14617939	205	1.9	204	81	9	464	35	10	6	47	1.65
14617981--14618022	13	3.2	13	86	3	57	73	0	2	23	0.94
14618777--14618823	19	2.5	20	82	10	62	78	6	2	12	1.02
14619052--14619203	75	2.0	75	100	0	304	26	6	26	39	1.81
14623168--14623200	14	2.3	15	89	5	50	27	6	6	60	1.44
14631193--14631217	12	2.1	12	100	0	50	52	16	16	16	1.76
14637650--14637724	38	2.0	38	94	2	134	21	21	21	36	1.96
14637861--14638077	108	2.0	108	96	0	398	48	10	16	24	1.76
14642561--14642627	2	33.5	2	100	0	134	0	49	0	50	1.00
14648916--14648990	30	2.5	31	80	4	91	36	2	2	58	1.26
14649013--14649069	22	2.4	25	83	13	77	52	5	0	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14656091--14656125	17	2.1	17	100	0	70	34	11	28	25	1.91
14656687--14656718	9	3.7	9	95	4	57	31	31	0	37	1.58
14662648--14662693	17	2.7	17	89	0	56	30	2	0	67	1.03
14662655--14662703	17	2.6	19	78	18	57	30	0	0	69	0.89
14663356--14663438	29	2.8	29	83	5	87	55	2	4	37	1.34
14669423--14669486	10	6.5	10	70	10	51	57	9	0	32	1.30
14669423--14669483	19	3.2	19	84	9	72	57	9	0	32	1.32
14669512--14669701	10	19.4	10	69	11	74	55	5	1	36	1.33
14669503--14669603	19	5.2	19	75	15	64	55	3	3	36	1.37
14669418--14669571	80	1.9	79	80	7	177	56	4	3	35	1.38
14669423--14669702	20	13.7	19	68	20	92	55	6	1	36	1.35
14669645--14669713	10	6.5	11	78	9	63	53	2	1	42	1.24
14669652--14669741	10	8.9	10	75	12	60	47	3	2	46	1.31
14670015--14670066	19	2.8	18	74	5	50	57	3	1	36	1.28
14670047--14670093	16	2.8	17	78	9	53	65	2	0	31	1.04
14670211--14670244	7	4.9	7	100	0	68	29	0	11	58	1.33
14670395--14670438	19	2.3	19	88	0	61	36	4	2	56	1.32
14670985--14671046	19	3.2	19	84	11	81	54	6	0	38	1.26
14671071--14671245	10	17.8	10	70	11	69	53	6	0	38	1.32
14671072--14671202	19	6.8	19	75	8	104	54	6	0	38	1.27
14671422--14671498	27	2.8	27	72	5	66	61	5	2	31	1.32
14671432--14671498	17	3.8	17	75	11	55	62	4	1	31	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14671851--14671883	17	2.0	17	88	5	50	21	3	0	75	0.93
14671870--14671911	19	2.3	18	88	8	59	26	2	4	66	1.23
14671831--14671985	69	2.2	69	79	12	167	32	4	3	58	1.36
14671936--14672143	9	21.6	9	69	15	87	34	1	4	59	1.26
14671936--14672050	20	5.9	19	76	13	101	38	1	3	56	1.27
14671947--14672072	21	6.4	20	71	15	93	34	1	4	58	1.29
14671938--14672179	20	12.2	20	68	17	89	35	1	4	58	1.26
14672230--14672290	29	2.1	29	87	6	88	31	1	6	60	1.32
14672706--14672872	84	2.0	84	91	0	271	37	12	15	34	1.85
14673973--14674013	18	2.3	18	100	0	82	46	0	29	24	1.53
14676255--14676289	2	17.5	2	100	0	70	48	0	0	51	1.00
14676713--14676779	30	2.2	31	83	2	82	37	2	2	56	1.30
14676797--14676854	30	1.9	30	82	3	71	51	6	0	41	1.28
14689965--14690026	30	2.0	31	90	3	99	29	1	17	51	1.55
14691781--14691867	42	2.1	42	86	0	120	45	17	9	27	1.78
14693123--14693158	18	1.9	19	88	5	56	36	0	0	63	0.94
14693866--14693927	28	2.2	28	88	0	88	29	4	4	61	1.37
14694227--14694270	2	22.5	2	86	13	65	50	0	2	47	1.13
14695398--14696321	306	3.0	302	77	7	817	35	13	15	36	1.86
14696370--14696438	35	2.0	35	91	5	113	36	14	15	33	1.89
14700351--14701853	187	8.1	185	84	5	1784	41	10	11	35	1.76
14700351--14701882	558	2.7	553	84	6	1991	41	10	11	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14701086--14701379	63	4.7	61	68	17	185	43	8	11	36	1.72
14701146--14701396	60	4.1	58	68	18	123	43	9	10	36	1.72
14700351--14701868	559	2.7	555	85	5	1992	41	10	11	35	1.76
14709498--14709532	9	4.0	9	92	3	54	34	0	0	65	0.93
14710569--14710609	20	2.0	20	90	4	64	82	0	14	2	0.76
14710829--14711021	45	4.3	44	82	2	136	43	15	14	27	1.85
14710812--14710979	45	3.8	44	80	2	147	42	16	15	25	1.87
14710855--14711114	96	2.8	90	82	6	240	42	18	13	25	1.87
14710934--14711306	48	7.8	48	82	5	398	41	17	12	28	1.86
14710898--14711275	146	2.6	146	81	9	390	41	17	12	27	1.86
14723134--14723503	204	1.8	200	83	5	494	34	12	7	44	1.71
14724506--14724564	7	8.3	7	75	17	50	77	1	18	1	0.93
14724503--14724545	17	2.4	18	92	3	70	76	0	23	0	0.78
14724573--14724620	3	16.0	3	91	8	80	66	2	0	31	1.03
14726245--14726288	22	2.0	21	82	8	52	56	11	6	25	1.58
14728696--14728735	20	2.1	19	90	4	62	67	0	0	32	0.91
14731152--14731194	21	2.0	21	100	0	86	27	20	18	32	1.96
14736730--14736762	17	2.0	16	94	5	57	51	6	0	42	1.26
14737276--14737308	15	2.1	16	88	11	50	45	6	24	24	1.75
14737890--14738035	62	2.4	62	83	6	181	40	13	12	34	1.81
14741783--14741829	23	2.0	23	100	0	94	36	8	0	55	1.31
14741955--14741987	16	2.0	17	88	5	50	42	0	9	48	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14742030--14742161	54	2.4	53	80	12	131	43	0	0	55	1.10
14744872--14744901	4	7.5	4	92	0	51	73	0	3	23	0.98
14747193--14747225	15	2.1	16	88	5	50	39	0	3	57	1.14
14747723--14747808	38	2.2	39	84	10	106	45	1	2	51	1.21
14757173--14757213	20	2.0	20	86	9	57	58	0	2	39	1.11
14758280--14758348	35	1.9	36	94	2	122	39	17	18	24	1.92
14759432--14759501	8	8.4	8	80	12	79	5	12	0	81	0.86
14759432--14759499	9	8.0	9	75	16	56	5	13	0	80	0.87
14759455--14759498	10	4.7	10	88	11	67	9	9	0	81	0.87
14759421--14759489	33	2.1	34	83	2	86	7	13	0	79	0.92
14759441--14759499	17	3.4	17	84	11	75	6	11	0	81	0.87
14774853--14775324	58	7.9	58	79	10	497	35	11	6	45	1.68
14775324--14775379	25	2.2	24	82	14	69	80	1	3	14	0.93
14775399--14775451	6	8.3	6	82	13	54	81	0	1	16	0.79
14775412--14775451	19	2.2	19	86	13	57	85	0	2	12	0.71
14775397--14775438	17	2.4	18	84	11	52	78	0	0	21	0.75
14775399--14775452	19	2.8	19	80	5	56	81	0	1	16	0.78
14776427--14776479	13	4.2	12	76	13	54	79	1	0	18	0.83
14776373--14776479	35	3.0	34	76	16	94	75	1	3	18	1.04
14776680--14776776	20	4.9	20	67	12	56	47	6	5	41	1.51
14776782--14776855	10	7.3	10	75	14	55	62	4	0	33	1.14
14776763--14776855	20	4.6	20	76	6	80	60	5	1	33	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14776762--14776855	30	3.1	29	77	11	100	59	5	1	34	1.27
14777032--14777085	25	2.1	26	82	3	65	55	0	5	38	1.23
14777442--14777489	22	2.2	22	96	0	87	43	4	2	50	1.33
14777590--14777845	10	26.8	9	64	18	56	39	3	4	53	1.38
14777569--14777620	17	3.1	16	83	8	59	30	3	3	61	1.32
14777648--14777683	19	1.9	19	88	5	56	44	2	5	47	1.41
14777652--14777699	19	2.5	19	79	3	51	52	2	4	41	1.32
14777630--14777714	27	3.1	26	79	11	80	43	2	3	50	1.32
14777685--14777788	21	5.2	21	73	14	78	41	2	4	50	1.38
14777685--14777788	20	5.2	20	72	14	81	41	2	4	50	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93