genome.fa.s190.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  9  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997377--997426	26	1.9	26	88	8	75	26	22	20	32	1.98
998554--998605	26	2.0	26	85	7	70	26	25	17	30	1.97
999035--999086	26	2.0	26	88	7	79	28	25	17	28	1.97
999772--1000107	159	2.1	158	81	6	392	19	28	27	23	1.99
999766--1000265	157	3.2	155	78	7	497	20	26	28	25	1.99
1000239--1000291	26	2.0	26	82	13	65	32	24	15	28	1.95
1000631--1001132	158	3.2	157	75	4	488	20	26	28	24	1.99
1001106--1001158	26	2.0	26	92	7	90	26	24	20	28	1.99
1002588--1002638	26	2.0	26	88	0	75	29	27	15	27	1.96
1002684--1002976	159	1.8	159	83	2	383	18	28	30	22	1.97
1003087--1003139	26	2.0	26	92	0	88	28	20	16	33	1.95
1002830--1003762	356	2.6	354	80	9	965	19	27	30	22	1.98
1003479--1003983	158	3.2	156	78	5	514	19	26	30	24	1.98
1004669--1004721	26	2.0	26	92	0	88	28	28	18	24	1.98
1005047--1005429	159	2.4	158	83	2	455	19	27	30	22	1.98
1005401--1005441	21	2.0	21	95	0	73	17	14	48	19	1.81
1005239--1005573	180	1.9	179	79	3	386	18	26	31	22	1.97
1005649--1005701	26	2.0	26	92	0	88	26	26	18	28	1.98
1006360--1006412	26	2.0	26	88	0	79	32	24	16	26	1.97
1006775--1007232	158	2.9	158	80	2	472	18	28	30	22	1.98
1007357--1007409	26	2.0	26	89	7	81	28	24	18	28	1.98
1008385--1008754	158	2.4	157	82	4	415	20	25	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008716--1009072	158	2.3	156	77	7	360	21	26	29	23	1.99
1008886--1009250	184	2.0	184	82	1	453	20	26	28	24	1.99
1009414--1009464	26	2.0	26	96	0	93	27	27	19	25	1.99
1009755--1009807	26	2.0	26	96	0	97	26	28	20	24	1.99
1008804--1010124	344	3.8	339	76	10	1072	20	27	28	23	1.99
1010171--1011666	343	4.3	344	80	5	1468	20	27	28	23	1.99
1010349--1011666	685	1.9	686	83	2	1709	20	27	28	22	1.99
1011329--1011758	159	2.7	157	75	4	369	20	28	29	21	1.98
1012534--1012586	26	2.0	26	89	7	81	26	26	20	26	1.99
1013726--1013778	26	2.0	26	88	0	79	26	28	20	24	1.99
1013752--1014115	159	2.3	158	76	8	380	20	27	29	21	1.98
1014226--1014278	26	2.0	26	89	7	81	32	22	15	30	1.94
1014423--1014475	26	2.0	26	89	7	81	28	26	18	26	1.98
1014449--1014952	158	3.2	158	81	3	602	20	25	29	24	1.99
1016099--1016151	26	2.0	26	89	7	81	26	22	20	30	1.98
1016533--1016995	159	2.9	156	76	8	427	18	26	30	23	1.98
1016967--1017019	26	2.0	26	89	7	81	30	24	18	26	1.98
1017647--1017699	26	2.0	26	89	7	81	30	26	16	26	1.97
1017737--1018345	158	3.8	157	79	7	546	19	28	30	22	1.98
1018085--1018517	171	2.5	171	80	6	459	19	28	28	22	1.98
1018991--1019043	26	2.0	26	82	13	65	30	24	15	30	1.95
1019739--1020239	155	3.2	158	76	7	414	19	27	29	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020932--1020984	26	2.0	26	96	0	97	26	28	20	24	1.99
1022307--1022359	26	2.0	26	85	7	72	26	20	18	33	1.96
1022503--1022554	26	2.0	26	92	0	86	28	28	17	25	1.97
1023747--1024099	158	2.2	159	79	6	376	19	26	29	24	1.98
1024071--1024122	26	2.0	25	92	3	86	28	23	19	28	1.98
1024028--1024408	197	1.9	197	81	6	459	21	24	27	26	2.00
1024976--1025029	26	2.1	26	92	0	90	27	25	18	27	1.98
1026198--1026250	26	2.0	26	89	7	81	26	22	20	30	1.98
1026525--1026579	25	2.2	26	87	9	78	34	23	16	25	1.95
1027028--1027080	26	2.0	26	89	7	81	28	24	18	28	1.98
1025670--1028056	830	2.8	836	81	5	2538	21	25	29	23	1.99
1027054--1027406	171	2.1	170	81	2	404	22	26	29	22	1.99
1027421--1027923	158	3.2	158	73	7	435	20	27	30	21	1.98
1027899--1027949	26	2.0	26	84	7	68	29	23	21	25	1.99
1028106--1028158	26	2.0	26	85	0	70	28	30	16	24	1.97
1028449--1028500	26	2.0	26	92	7	88	26	23	19	30	1.98
1028735--1028784	26	1.9	26	95	0	91	30	26	18	26	1.98
1029256--1029308	26	2.0	26	85	7	72	30	24	18	26	1.98
1029727--1029779	26	2.0	26	92	7	90	26	22	20	30	1.98
1033200--1033252	26	2.0	26	89	7	81	28	24	16	30	1.97
1033922--1033974	26	2.0	26	89	7	81	26	28	18	26	1.98
1041008--1041060	26	2.0	26	88	0	79	30	28	16	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041034--1041535	159	3.2	157	78	6	498	18	27	30	22	1.98
1041350--1041720	184	2.0	185	85	1	494	18	25	30	25	1.98
1042586--1042638	26	2.0	26	96	0	97	26	28	20	24	1.99
1042652--1043104	159	2.9	158	76	7	351	18	27	30	22	1.98
1042612--1043113	158	3.2	156	76	8	501	19	27	29	23	1.98
1043468--1043520	26	2.0	26	88	0	79	26	26	18	28	1.98
1043494--1043995	158	3.2	157	75	6	501	19	27	30	23	1.98
1043969--1044021	26	2.0	26	85	7	72	22	24	22	30	1.99
1044691--1044743	26	2.0	26	89	7	81	28	26	18	26	1.98
1044717--1045079	159	2.3	157	75	6	356	20	26	29	23	1.99
1045190--1045242	26	2.0	26	85	7	72	28	22	18	30	1.98
1046302--1046354	26	2.0	26	89	7	81	28	24	18	28	1.98
1046110--1046775	355	1.9	354	85	1	931	22	25	27	23	2.00
1046657--1046709	26	2.0	26	85	7	72	32	20	15	32	1.93
1046122--1046868	355	2.1	354	82	2	899	21	25	27	24	1.99
1048401--1048453	26	2.0	26	92	7	90	26	20	20	32	1.98
1048226--1048882	355	1.9	352	83	2	852	21	24	29	24	1.99
1049014--1049360	184	1.9	185	84	3	466	22	26	26	24	2.00
1049994--1050046	26	2.0	26	92	0	88	26	26	20	26	1.99
1050673--1051064	159	2.5	159	79	7	366	20	26	28	24	1.99
1049910--1050937	539	1.9	539	82	2	1285	20	25	28	25	1.99
1050876--1051246	184	2.0	185	83	1	467	20	26	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052611--1052660	26	1.9	26	87	0	73	24	28	20	28	1.99
1052952--1053004	26	2.0	26	89	7	81	28	24	18	28	1.98
1053321--1053371	26	2.0	26	92	0	84	29	25	17	27	1.98
1053439--1053489	26	2.0	26	96	0	93	27	25	19	27	1.99
1053271--1053505	118	2.0	118	96	0	434	24	29	21	24	1.99
1053465--1053964	158	3.2	155	75	9	497	21	26	28	24	1.99
1053938--1053990	26	2.0	26	92	7	90	26	24	20	28	1.99
1054819--1054871	26	2.0	26	92	0	88	26	26	18	28	1.98
1056529--1056581	26	2.0	26	86	13	74	30	24	16	28	1.97
1057767--1058014	127	1.9	127	95	0	442	28	22	29	19	1.98
1058270--1058320	26	2.0	26	88	7	77	25	23	19	31	1.98
1059468--1059520	26	2.0	26	85	0	70	26	26	18	28	1.98
1061583--1062091	159	3.2	159	77	8	473	21	26	28	23	1.99
1062063--1062115	26	2.0	26	92	7	90	30	24	16	28	1.97
1062419--1062471	26	2.0	26	96	0	97	26	28	20	24	1.99
1062919--1062971	26	2.0	26	96	0	97	26	28	20	24	1.99
1062394--1063667	501	2.5	501	83	3	1466	20	25	29	24	1.99
1063072--1063449	159	2.4	160	80	6	428	18	24	30	25	1.98
1063421--1063473	26	2.0	26	92	7	90	26	24	20	28	1.99
1063801--1063853	26	2.0	26	88	0	79	30	28	16	24	1.97
1070391--1070443	26	2.0	26	85	0	70	30	28	15	26	1.96
1070891--1070943	26	2.0	26	85	0	70	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071296--1071956	159	4.2	158	75	4	551	19	27	30	23	1.98
1071771--1072363	185	3.1	185	82	5	690	21	27	28	22	1.99
1073135--1073187	26	2.0	26	89	7	81	28	26	18	26	1.98
1073161--1073662	158	3.2	156	74	9	494	20	26	28	24	1.99
1073636--1073688	26	2.0	26	89	7	81	28	24	18	28	1.98
1074171--1074223	26	2.0	26	85	7	72	30	24	16	28	1.97
1073827--1074554	185	4.0	183	76	6	651	21	25	28	25	1.99
1074699--1074751	26	2.0	26	92	0	88	28	28	18	24	1.98
1079937--1079989	26	2.0	26	96	0	97	30	24	16	28	1.97
1080437--1080489	26	2.0	26	85	7	72	30	24	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93