genome.fa.s190.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  69  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9745349--9745403	27	2.0	27	85	0	74	58	1	3	36	1.26
9745539--9745609	35	2.1	35	85	12	96	42	2	0	54	1.14
9745985--9746017	2	16.5	2	100	0	66	51	0	0	48	1.00
9746027--9746080	20	2.7	20	85	5	65	44	0	0	55	0.99
9752439--9752484	24	2.0	22	83	8	56	58	8	8	23	1.56
9752326--9752978	231	2.8	228	75	8	593	51	5	10	31	1.61
9752315--9752866	232	2.4	233	81	5	623	51	5	10	32	1.59
9753187--9753249	22	3.0	21	73	13	58	42	3	1	52	1.27
9753187--9753269	42	2.0	42	81	11	98	43	3	2	50	1.32
9753529--9753564	18	1.9	18	88	5	54	61	0	5	33	1.19
9754113--9754233	63	1.9	63	94	3	217	61	8	8	21	1.50
9754654--9755253	235	2.5	239	81	7	672	53	5	10	30	1.57
9755537--9755793	127	2.0	127	98	0	496	49	6	8	35	1.59
9756483--9756550	9	6.7	10	75	20	54	26	2	1	69	1.12
9758361--9758406	20	2.4	19	85	3	56	21	2	6	69	1.22
9760651--9760702	13	3.8	13	78	9	59	67	0	0	32	0.91
9760649--9760737	19	4.5	21	73	19	68	65	0	0	34	0.93
9762070--9762118	24	2.0	25	88	4	73	44	8	16	30	1.76
9764281--9764332	22	2.4	22	75	18	54	46	0	3	50	1.20
9775745--9775784	17	2.4	16	87	4	62	67	0	10	22	1.20
9780177--9780206	2	15.0	2	100	0	60	50	0	0	50	1.00
9788405--9788478	34	2.2	34	82	2	96	37	10	5	45	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9800380--9800406	2	13.5	2	100	0	54	51	0	48	0	1.00
9802819--9802853	11	3.2	11	87	0	52	54	20	0	25	1.45
9803715--9803754	11	3.6	11	86	0	62	55	17	0	27	1.43
9804155--9804229	39	1.9	39	84	7	100	52	1	4	42	1.28
9804219--9804256	17	2.3	17	86	4	51	65	2	2	28	1.19
9804421--9804479	18	3.4	18	71	13	52	59	3	0	37	1.14
9804405--9804479	35	2.2	34	84	15	95	58	2	1	37	1.20
9804913--9804946	17	2.0	17	88	0	50	41	0	0	58	0.98
9805259--9805335	34	2.3	34	81	4	93	48	7	3	40	1.51
9811388--9811431	2	23.0	2	90	9	74	0	47	0	52	1.00
9811388--9811431	19	2.3	19	100	0	88	0	47	0	52	1.00
9823171--9823378	105	2.0	105	92	0	344	50	11	22	15	1.76
9826535--9826609	6	11.2	6	72	20	51	73	4	1	21	1.07
9826535--9826609	13	5.6	12	75	17	51	73	4	1	21	1.07
9828315--9828486	90	1.9	94	82	9	221	45	2	1	50	1.27
9835375--9835428	25	2.2	25	80	6	67	20	9	16	53	1.70
9837874--9837935	29	2.1	29	82	5	72	16	4	6	72	1.23
9837896--9837934	10	3.5	11	89	10	53	17	5	0	76	0.96
9838836--9838918	39	2.1	39	88	4	123	46	1	1	50	1.16
9838857--9838934	36	2.2	36	81	9	88	46	1	1	51	1.17
9839571--9839736	59	2.8	58	84	3	197	36	10	8	43	1.70
9840509--9840549	17	2.3	19	83	8	59	73	0	7	19	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9854840--9854905	33	2.0	33	96	0	123	33	16	9	40	1.80
9854886--9854934	26	1.9	26	87	4	73	34	18	6	40	1.75
9859028--9859069	12	3.3	13	83	12	52	45	19	2	33	1.63
9861667--9861698	15	2.1	15	94	5	55	6	18	0	75	1.01
9862465--9862500	18	2.0	18	100	0	72	16	0	22	61	1.35
9866240--9866281	12	3.5	12	80	0	57	64	7	2	26	1.32
9866233--9866288	24	2.3	24	90	3	85	60	5	5	28	1.41
9866635--9867003	29	12.5	30	75	10	228	44	33	0	21	1.56
9866640--9866692	13	3.8	13	79	16	61	49	30	1	18	1.59
9866772--9867100	16	22.2	15	65	16	89	45	33	0	20	1.56
9866640--9867003	89	4.1	87	83	6	448	45	33	0	20	1.56
9866640--9867506	59	14.4	59	72	12	378	46	31	1	20	1.60
9866672--9867534	148	5.8	145	74	11	541	46	31	1	20	1.60
9866993--9867534	30	18.4	29	69	15	110	46	30	1	20	1.61
9866994--9867559	58	9.6	57	73	12	235	46	30	1	20	1.61
9867023--9867508	89	5.5	86	75	10	249	46	30	2	20	1.62
9867281--9867474	14	13.1	14	72	13	97	48	29	1	20	1.59
9867571--9867624	20	2.6	22	83	11	62	50	27	0	22	1.50
9874207--9874251	21	2.1	21	84	8	56	82	8	4	4	0.94
9874209--9874251	16	2.6	17	85	3	61	83	6	4	4	0.89
9876365--9876681	118	2.7	118	84	5	390	34	17	13	34	1.89
9876609--9876843	75	3.1	72	81	12	276	34	16	16	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9876869--9877014	75	1.9	75	89	5	224	38	13	10	37	1.79
9876684--9877036	172	2.0	174	84	4	464	35	16	14	33	1.89
9877129--9877222	22	4.3	22	71	10	68	32	19	14	32	1.92
9877189--9877236	21	2.3	21	85	0	60	27	18	14	39	1.90
9877266--9877339	37	2.1	34	85	7	94	16	18	14	50	1.79
9877426--9877515	36	2.5	36	79	1	90	14	22	22	41	1.89
9877815--9877862	18	2.8	17	90	6	78	79	10	2	8	1.02
9877815--9877869	18	3.2	17	87	7	76	81	9	1	7	0.93
9879108--9879164	3	18.7	3	81	3	69	61	3	3	31	1.30
9879538--9879818	7	38.0	7	64	16	68	44	33	0	21	1.56
9879538--9879609	16	4.6	17	75	13	57	41	37	0	20	1.53
9879524--9879593	30	2.3	30	82	4	88	45	35	0	18	1.50
9879538--9879638	45	2.2	47	87	5	145	42	36	0	20	1.53
9879584--9879814	59	3.9	59	80	6	238	45	31	0	22	1.56
9879584--9879814	29	7.9	29	78	6	225	45	31	0	22	1.56
9879774--9879798	13	1.9	13	100	0	50	52	32	0	16	1.44
9879787--9879828	16	2.6	16	88	7	59	38	38	0	23	1.55
9879847--9879930	14	5.9	13	72	14	60	46	32	4	16	1.68
9879998--9880152	14	10.6	13	69	16	58	46	31	2	19	1.63
9879842--9880108	58	4.6	57	74	10	193	44	31	2	21	1.67
9879802--9880108	147	2.1	147	89	2	474	44	30	2	22	1.66
9880054--9880126	21	3.3	20	73	14	56	46	28	1	23	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9880103--9880185	30	2.8	29	80	8	96	48	31	1	19	1.57
9880245--9880304	20	2.9	20	81	13	68	50	31	0	18	1.47
9880098--9880277	30	6.1	28	72	12	87	46	31	1	21	1.58
9888380--9888440	25	2.4	25	94	0	104	36	19	13	31	1.90
9893806--9893833	14	2.0	14	100	0	56	50	7	14	28	1.69
9894059--9894120	22	2.8	21	76	9	61	32	0	4	62	1.16
9894120--9894185	25	2.5	25	82	7	69	51	1	0	46	1.10
9902938--9903002	26	2.5	25	78	16	71	32	0	3	64	1.09
9902980--9903029	11	4.5	11	80	12	50	44	0	0	56	0.99
9904404--9904466	27	2.4	26	86	2	81	34	1	0	63	1.04
9904422--9904466	21	2.1	22	87	4	65	31	0	0	68	0.89
9906103--9906127	13	1.9	13	100	0	50	16	8	8	68	1.38
9906918--9906956	11	3.5	11	85	3	51	10	5	2	82	0.93
9916068--9916922	370	2.3	371	85	2	1218	20	30	22	26	1.98
9920733--9920890	62	2.6	62	84	4	196	40	11	4	43	1.61
9929441--9929475	13	2.8	13	91	4	54	54	14	0	31	1.40
9931087--9931145	21	2.9	22	80	16	65	16	5	3	74	1.13
9933727--9933782	27	2.1	27	96	0	103	14	50	10	25	1.75
9943151--9943202	27	1.9	26	85	14	70	42	3	0	53	1.19
9943211--9943258	22	2.3	22	75	10	57	54	4	0	41	1.20
9945033--9945079	21	2.2	21	100	0	94	51	0	0	48	1.00
9946588--9946656	34	2.1	34	88	2	104	24	14	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9952281--9952313	17	1.9	17	93	0	57	3	6	0	90	0.52
9952354--9952398	15	2.8	16	86	6	56	55	2	0	42	1.12
9952720--9952776	27	2.2	26	84	9	71	35	3	1	59	1.25
9952740--9952781	21	2.0	22	85	4	59	30	4	2	61	1.29
9952726--9952800	40	1.9	37	84	12	98	33	4	2	60	1.30
9954373--9954624	138	1.8	139	83	4	339	32	9	15	41	1.80
9957960--9957990	15	2.1	15	93	0	53	58	29	0	12	1.35
9969734--9969790	27	2.1	27	87	9	80	47	0	0	52	1.00
9969779--9969838	22	2.6	23	74	12	61	35	0	0	65	0.93
9975091--9975129	12	3.4	11	83	13	51	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93