genome.fa.s190.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  1  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--3406	891	3.8	890	87	3	4617	25	23	24	26	2.00
5534--5586	26	2.0	26	92	0	88	30	18	18	32	1.96
3443--10238	896	7.6	895	86	3	8625	26	24	23	25	2.00
8209--8261	26	2.0	26	92	0	88	26	24	22	26	2.00
9104--9156	26	2.0	26	85	0	70	26	20	24	28	1.99
10000--10057	26	2.2	27	84	9	75	24	24	22	29	1.99
10162--12626	870	2.8	866	86	2	3348	26	23	24	26	2.00
14133--14185	26	2.0	26	85	0	70	30	20	22	26	1.98
15925--15977	26	2.0	26	88	0	79	28	24	22	24	2.00
16827--16891	26	2.5	26	92	0	103	27	21	24	26	1.99
17727--17779	26	2.0	26	88	0	79	28	20	22	28	1.99
18614--18666	26	2.0	26	85	0	70	28	22	24	24	2.00
19514--19566	26	2.0	26	92	0	88	28	22	22	26	1.99
13842--25100	895	12.5	894	77	10	9898	26	24	24	25	2.00
20409--20461	26	2.0	26	88	0	79	26	26	20	26	1.99
23194--23266	26	2.8	26	91	0	128	31	23	17	27	1.97
24101--24153	26	2.0	26	96	0	97	26	16	24	32	1.97
24959--25011	26	2.0	26	96	0	97	26	22	24	26	2.00
31684--31735	26	2.0	26	92	3	88	26	23	23	26	2.00
32555--32607	26	2.0	26	96	0	97	26	22	24	26	2.00
30937--32787	876	2.1	880	92	4	3207	24	25	25	24	2.00
33274--35360	868	2.4	869	85	5	2764	26	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35334--35386	26	2.0	26	89	7	81	26	18	24	30	1.98
35334--35808	246	1.9	247	82	2	587	25	27	24	21	1.99
42976--43028	26	2.0	26	88	0	79	30	22	20	26	1.98
44679--44731	26	2.0	26	92	0	88	28	22	22	26	1.99
43097--45485	892	2.7	876	85	4	3072	26	23	23	27	2.00
45500--48361	896	3.3	882	80	8	2526	25	24	24	24	2.00
48097--48472	158	2.4	157	87	2	518	23	28	29	18	1.98
48097--48524	158	2.7	157	85	4	455	23	27	30	18	1.98
49125--49177	26	2.0	26	88	0	79	28	22	20	28	1.99
50021--50073	26	2.0	26	85	0	70	28	18	20	32	1.97
50923--50973	26	2.0	26	96	0	93	27	21	25	25	1.99
48255--51965	901	4.1	898	87	2	5073	25	24	24	25	2.00
53440--53492	26	2.0	26	92	0	88	30	20	22	26	1.98
52605--54184	792	2.0	793	89	1	2436	26	22	23	27	2.00
54323--54375	26	2.0	26	92	0	88	26	20	24	28	1.99
54321--54807	248	2.0	248	85	1	672	25	28	25	20	1.99
56324--56376	26	2.0	26	85	0	70	24	18	26	30	1.98
63931--63983	26	2.0	26	96	0	97	26	18	24	30	1.98
62347--70874	895	9.6	894	87	3	11446	25	23	24	26	2.00
67465--67516	26	2.0	26	96	0	95	26	21	21	30	1.98
69117--69150	12	2.8	12	100	0	68	35	14	23	26	1.94
70146--70197	25	2.0	25	85	3	68	28	25	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71852--71890	17	2.4	16	87	8	60	15	0	33	51	1.44
72285--72334	17	2.9	17	80	13	57	76	2	2	20	0.99
73433--73656	88	2.6	87	84	1	286	38	16	22	22	1.92
73561--73927	133	2.8	131	83	4	416	37	18	21	22	1.94
73774--73840	23	3.0	23	80	2	82	26	20	26	25	1.99
74386--74414	15	1.9	15	100	0	58	44	13	20	20	1.85
74632--74975	33	10.5	32	77	10	297	34	15	20	30	1.93
74632--74975	131	2.6	131	85	6	443	34	15	20	30	1.93
74632--74977	66	5.3	65	81	7	398	33	15	19	31	1.93
74974--75004	5	6.2	5	100	0	62	22	0	0	77	0.77
76189--76233	9	4.9	9	83	5	54	2	6	4	86	0.76
76188--76233	19	2.5	18	79	6	56	4	6	4	84	0.85
77819--77871	26	2.0	26	88	0	79	28	22	20	28	1.99
77637--78126	248	2.0	248	82	2	608	21	25	27	25	2.00
78067--78119	26	2.0	26	85	0	70	28	20	22	28	1.99
77886--79946	902	2.3	876	84	5	2656	25	23	25	26	2.00
80550--82168	826	2.0	823	89	1	2485	26	24	23	25	2.00
82342--82394	26	2.0	26	89	7	81	30	24	18	26	1.98
84101--84153	26	2.0	26	88	0	79	28	20	22	28	1.99
84999--85051	26	2.0	26	92	0	88	26	22	22	28	1.99
83159--90185	899	7.9	892	84	4	8744	26	23	23	26	2.00
86762--86814	26	2.0	26	92	0	88	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88536--88588	26	2.0	26	96	0	97	26	24	22	26	2.00
85896--90185	880	4.8	881	84	5	5210	26	23	23	26	2.00
96185--96237	26	2.0	26	88	0	79	26	20	22	30	1.98
99863--99915	26	2.0	26	96	0	97	26	24	20	28	1.99
98990--100773	884	2.0	893	86	3	2535	25	23	24	26	2.00
100936--100977	14	3.1	14	82	6	59	73	11	0	14	1.09
102374--102422	17	2.8	17	85	11	64	51	28	0	20	1.48
102375--102428	17	3.2	16	84	10	63	51	29	0	18	1.46
110388--110440	26	2.0	26	92	0	88	28	20	22	28	1.99
108777--110948	886	2.5	881	85	3	2913	26	23	22	27	2.00
116258--116310	26	2.0	26	92	0	88	26	20	24	28	1.99
117811--117863	26	2.0	26	88	0	79	26	20	22	30	1.98
116574--118576	897	2.2	887	86	3	2793	26	24	23	26	2.00
119125--119183	26	2.2	26	81	6	64	61	6	8	23	1.49
119546--119597	26	2.0	26	92	0	86	28	23	21	26	1.99
120442--120494	26	2.0	26	89	7	81	26	18	22	32	1.97
118668--124795	898	6.8	895	86	3	8165	25	23	24	25	2.00
121342--121392	26	2.0	26	92	0	84	27	19	19	33	1.96
122238--122290	26	2.0	26	85	0	70	28	24	16	30	1.97
123125--123177	26	2.0	26	96	0	97	26	20	22	30	1.98
128114--128166	26	2.0	26	96	0	97	26	24	22	26	2.00
126356--129577	885	3.6	881	87	3	4449	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133960--134012	26	2.0	26	88	0	79	35	16	15	32	1.90
132121--135615	895	3.9	891	86	3	4558	26	23	23	26	2.00
134850--134902	26	2.0	26	88	0	79	26	20	22	30	1.98
135714--141873	896	6.9	896	83	5	7372	25	23	24	26	2.00
137479--137531	26	2.0	26	85	7	72	26	20	22	30	1.98
138379--138452	25	2.8	26	84	14	89	27	21	21	29	1.99
138374--138447	27	2.7	27	80	17	91	27	22	18	31	1.98
140181--140233	26	2.0	26	88	0	79	30	20	18	30	1.97
144260--144312	26	2.0	26	96	0	97	26	24	22	26	2.00
145160--145212	26	2.0	26	96	0	97	26	24	22	26	2.00
146044--146096	26	2.0	26	92	0	88	26	22	22	28	1.99
146914--146966	26	2.0	26	92	0	88	26	22	22	28	1.99
147801--147857	26	2.2	26	93	3	98	28	21	17	33	1.96
143408--148811	901	6.1	897	86	3	7259	25	23	24	26	2.00
148707--148759	26	2.0	26	96	0	97	30	24	18	26	1.98
151010--151077	26	2.6	26	97	0	127	27	20	22	29	1.98
159040--159092	26	2.0	26	88	0	79	26	24	22	26	2.00
157554--167140	894	10.8	894	86	3	12487	25	23	24	26	2.00
160828--160880	26	2.0	26	82	7	63	30	20	18	30	1.97
164340--164392	26	2.0	26	92	0	88	26	22	22	28	1.99
165240--165289	26	1.9	26	95	0	91	26	24	22	28	1.99
166120--166172	26	2.0	26	92	0	88	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167019--167071	26	2.0	26	92	0	88	28	22	22	26	1.99
167283--167316	13	2.5	14	85	4	52	79	8	0	11	0.94
167276--167317	14	2.9	15	79	10	52	78	7	0	14	0.95
168718--168778	17	3.7	16	78	12	61	47	27	1	22	1.61
174029--174053	9	2.8	9	100	0	50	92	0	8	0	0.40
174900--175177	33	8.5	33	78	5	273	30	19	16	34	1.93
174899--175177	66	4.3	65	81	4	330	30	18	16	34	1.93
174899--175177	131	2.1	130	88	0	414	30	18	16	34	1.93
175966--176032	23	3.0	23	88	2	100	25	25	20	28	1.99
175972--176037	22	3.0	22	86	2	87	27	24	19	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93