genome.fa.s190.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  2  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175880--176207	133	2.5	133	87	3	439	22	21	17	37	1.94
176098--176157	23	2.7	23	92	2	95	28	23	18	30	1.98
176150--176370	87	2.6	84	84	5	264	22	19	17	41	1.91
176565--176595	12	2.5	13	94	5	55	80	6	0	12	0.89
176558--176599	13	3.2	13	86	13	59	78	7	0	14	0.95
177947--178000	17	3.2	16	82	10	63	51	29	0	18	1.46
182219--182271	26	2.0	26	88	0	79	28	18	22	30	1.98
183989--184041	26	2.0	26	88	0	79	24	22	22	30	1.99
180840--190163	894	10.4	895	86	2	12130	26	23	23	25	2.00
187570--187622	26	2.0	26	85	0	70	30	24	20	24	1.99
188464--188516	26	2.0	26	92	0	88	28	24	20	26	1.99
189361--189413	26	2.0	26	92	0	88	26	22	22	28	1.99
190856--190908	26	2.0	26	92	0	88	28	22	20	28	1.99
191679--192484	285	2.8	283	85	3	1052	19	27	28	24	1.98
192215--194899	900	3.0	894	85	4	3659	25	23	24	26	2.00
195765--195817	26	2.0	26	89	7	81	30	24	18	26	1.98
203129--203181	26	2.0	26	92	0	88	28	24	20	26	1.99
204006--204057	25	2.0	26	92	3	88	26	25	21	26	1.99
202278--204758	872	2.8	880	93	3	4281	25	25	24	24	2.00
209317--209366	26	1.9	26	91	0	82	28	24	20	28	1.99
207706--210123	895	2.7	892	92	3	3863	27	24	23	25	2.00
212860--213177	61	5.1	59	75	14	275	35	11	7	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213176--213254	29	2.7	30	75	16	78	77	2	8	11	1.09
213236--213330	4	24.0	4	75	18	83	70	4	0	25	1.05
214114--214190	9	8.1	9	78	15	57	70	5	3	20	1.23
214291--214392	22	4.5	22	77	12	89	75	0	1	21	0.96
214290--214417	43	2.9	43	73	13	127	72	1	3	21	1.09
214333--214393	11	5.6	11	76	18	65	78	0	0	21	0.75
214335--214392	6	9.5	6	82	14	66	81	0	0	18	0.70
214340--214392	16	3.5	14	82	12	61	81	0	0	18	0.70
214333--214387	8	6.9	8	74	15	51	80	0	0	20	0.72
214601--214808	41	5.1	41	84	9	241	35	25	17	22	1.95
214639--214795	35	4.1	36	82	13	163	35	24	17	21	1.95
215799--215917	8	14.6	8	78	13	109	10	16	0	71	1.19
215829--215911	30	2.8	29	89	3	130	12	18	1	68	1.26
225739--225983	58	4.1	57	85	9	312	34	12	8	44	1.73
225739--225957	120	1.8	117	94	2	384	34	13	7	44	1.73
225983--226053	5	14.6	5	73	14	51	80	0	7	12	0.90
225980--226053	32	2.3	33	84	11	93	81	0	6	12	0.88
225981--226074	36	2.6	36	75	16	93	77	0	7	14	0.97
226015--226112	18	5.4	19	71	8	64	71	3	4	21	1.17
226896--226942	23	2.1	23	84	4	60	76	6	2	14	1.08
226894--226953	23	2.7	22	80	10	59	71	8	1	18	1.19
226894--226953	22	2.7	22	80	10	68	71	8	1	18	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226952--226992	12	3.6	12	78	21	52	60	7	7	24	1.48
227026--227056	3	10.7	3	93	6	55	70	0	0	29	0.87
227021--227056	14	2.5	14	90	4	54	75	0	0	25	0.81
227141--227218	19	4.2	18	76	16	70	78	1	1	19	0.90
227141--227218	6	12.5	6	76	15	70	78	1	1	19	0.90
230790--230842	26	2.0	26	88	0	79	26	22	22	28	1.99
235336--237403	516	4.0	516	97	0	3875	34	17	18	30	1.94
238941--238978	11	3.5	11	89	10	60	86	0	13	0	0.56
238932--238978	22	2.1	22	88	7	69	85	2	10	2	0.78
238923--238978	19	2.9	19	83	2	67	85	3	8	1	0.78
238923--238978	10	5.9	9	81	10	58	85	3	8	1	0.78
240245--240490	33	7.5	32	77	9	216	28	19	17	34	1.94
240243--240522	66	4.3	65	82	7	320	29	18	16	34	1.94
240246--240490	99	2.5	99	86	8	349	28	19	17	35	1.94
241313--241379	23	3.0	23	80	2	82	25	23	22	28	1.99
241298--241592	133	2.2	133	83	3	380	24	23	17	34	1.96
241445--241507	23	2.8	23	90	2	101	26	25	19	28	1.98
241491--241720	88	2.6	87	84	4	286	21	21	18	38	1.93
241905--241938	11	3.2	10	88	12	50	85	5	0	8	0.75
243307--243350	17	2.6	17	82	7	54	52	27	0	20	1.47
244954--245006	26	2.0	26	92	0	88	28	22	22	26	1.99
245852--245904	26	2.0	26	96	0	97	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244274--246626	885	2.6	899	90	2	3670	26	24	23	25	2.00
246044--247193	580	2.0	579	92	0	1931	29	23	19	27	1.98
247320--247372	26	2.0	26	96	0	97	26	24	22	26	2.00
250312--250341	15	2.0	15	100	0	60	13	13	40	33	1.83
252495--252547	26	2.0	26	92	0	88	28	22	22	26	1.99
253389--253441	26	2.0	26	88	0	79	26	20	22	30	1.98
253658--257186	896	4.0	893	86	3	4651	25	24	23	26	2.00
257640--257713	26	2.8	26	87	4	114	28	17	27	27	1.98
261849--261893	23	2.0	23	100	0	90	17	28	31	22	1.97
261851--261901	23	2.2	23	92	0	84	19	27	29	23	1.98
264265--264317	26	2.0	26	92	0	88	26	18	24	30	1.98
266572--266624	26	2.0	26	88	0	79	26	20	22	30	1.98
265304--267420	883	2.4	887	83	5	2787	25	23	24	26	2.00
267591--267643	26	2.0	26	96	0	97	26	24	22	26	2.00
268019--268059	20	2.0	20	90	0	64	48	12	17	21	1.79
270117--270167	26	2.0	26	92	0	84	25	23	23	27	2.00
270390--270430	14	2.9	15	82	10	59	78	9	0	12	0.98
270390--270432	13	3.1	14	83	10	61	76	9	0	13	1.01
271812--271878	17	4.0	17	77	9	66	49	29	1	19	1.57
284776--284828	26	2.0	26	92	0	88	28	22	22	26	1.99
283165--285282	894	2.4	893	86	2	2948	26	23	23	26	2.00
285598--285649	25	2.0	26	88	3	79	28	23	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291648--297870	896	7.0	896	86	2	8476	26	24	24	25	2.00
294199--294251	26	2.0	27	96	3	99	30	20	26	22	1.98
296849--296901	26	2.0	26	85	7	72	24	20	24	30	1.99
297745--297797	26	2.0	26	85	7	72	24	18	24	32	1.97
297033--299313	722	3.1	719	89	4	3300	26	23	23	26	2.00
299189--299241	26	2.0	26	88	0	79	24	20	24	30	1.99
300085--300137	26	2.0	26	88	0	79	28	20	22	28	1.99
298493--300552	896	2.3	884	87	2	2893	25	23	24	26	2.00
302691--302743	26	2.0	26	96	0	97	26	22	24	26	2.00
301957--305984	898	4.5	896	88	2	5682	26	24	23	26	2.00
305384--305436	26	2.0	26	92	0	88	26	20	26	26	1.99
306008--306060	26	2.0	26	92	0	88	26	18	24	30	1.98
307607--307659	26	2.0	27	85	3	72	26	18	26	28	1.98
308497--308549	26	2.0	26	92	0	88	28	22	22	26	1.99
310287--310339	26	2.0	26	89	7	81	26	18	24	30	1.98
306238--312986	895	7.6	892	84	4	8012	26	24	23	26	2.00
311191--311260	26	2.7	26	100	0	140	30	20	24	25	1.99
312239--313611	710	1.9	709	87	3	1999	27	21	22	27	1.99
313671--313723	26	2.0	26	88	0	79	26	22	24	26	2.00
312934--322155	892	10.4	894	84	4	11021	26	24	23	25	2.00
315448--315500	26	2.0	26	96	0	97	26	18	24	30	1.98
316341--316393	26	2.0	26	92	0	88	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317244--317296	26	2.0	26	92	0	88	26	20	24	28	1.99
318998--319050	26	2.0	26	92	0	88	28	22	22	26	1.99
319895--319947	26	2.0	26	96	0	97	30	22	20	26	1.98
320787--320838	26	2.0	26	96	0	95	28	19	25	26	1.98
321571--322810	655	1.9	652	88	1	1696	25	24	24	25	2.00
323196--323248	26	2.0	26	88	0	79	28	20	22	28	1.99
323537--323589	25	2.1	25	100	0	106	30	13	11	45	1.78
322217--326639	887	4.9	889	83	6	5406	26	23	23	26	2.00
325883--325935	26	2.0	26	96	0	97	26	22	24	26	2.00
326311--326369	26	2.3	26	91	5	93	27	13	13	45	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93