genome.fa.s190.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  71  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10190433--10190494	20	3.0	20	85	4	79	54	4	3	37	1.38
10190537--10190581	19	2.3	19	81	14	56	31	0	4	64	1.13
10190531--10190608	28	2.8	28	80	18	83	29	0	5	65	1.14
10190599--10190632	15	2.3	15	94	0	59	32	0	5	61	1.20
10190837--10190900	26	2.4	26	84	5	74	37	4	3	54	1.37
10193846--10193878	15	2.2	15	94	0	57	21	0	9	69	1.15
10218534--10218565	12	2.4	14	80	20	50	37	15	21	25	1.93
10218540--10218565	12	2.2	12	100	0	52	42	15	19	23	1.89
10218835--10218869	16	2.2	16	89	0	52	40	11	14	34	1.82
10220785--10220814	13	2.2	14	94	5	53	56	16	0	26	1.40
10224936--10225041	55	1.9	55	88	3	160	38	15	15	31	1.88
10224989--10225083	49	1.9	49	86	0	136	36	14	14	33	1.87
10226130--10226216	14	6.1	14	73	16	54	6	8	4	80	1.02
10236866--10236907	3	14.0	3	94	0	75	66	0	2	30	1.04
10242271--10242300	13	2.3	13	94	0	51	0	33	0	66	0.92
10242270--10242313	20	2.3	19	84	4	52	4	31	0	63	1.14
10242376--10242402	14	1.9	14	100	0	54	44	0	0	55	0.99
10242459--10242538	34	2.4	34	79	8	92	43	13	6	36	1.70
10244492--10244532	16	2.9	15	80	20	52	48	0	0	51	1.00
10244501--10244559	29	2.2	25	85	11	73	52	1	0	45	1.10
10244680--10244731	20	2.6	19	85	8	68	63	0	1	34	1.06
10245324--10245366	20	2.1	21	91	4	70	32	4	0	62	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10245321--10245366	11	4.4	11	75	10	51	32	4	0	63	1.14
10245511--10245584	14	5.4	14	67	22	50	50	0	2	47	1.15
10249867--10249895	12	2.3	13	94	5	51	65	0	6	27	1.18
10249920--10249964	13	3.3	13	81	9	54	44	4	2	48	1.35
10250075--10250193	53	2.3	51	78	4	130	48	1	1	47	1.21
10250226--10250403	35	5.1	35	72	16	118	41	2	0	55	1.16
10250292--10250359	24	2.8	24	78	10	66	42	2	0	54	1.15
10250253--10250366	49	2.3	50	81	7	133	42	3	0	53	1.24
10250253--10250439	31	6.8	27	70	21	106	43	2	1	52	1.22
10252355--10252387	2	16.5	2	100	0	66	51	0	48	0	1.00
10258430--10258463	17	2.0	17	94	0	59	85	0	11	2	0.71
10258427--10258463	12	3.0	13	84	7	51	83	0	10	5	0.79
10259574--10259617	6	7.3	6	100	0	88	50	18	15	15	1.79
10262085--10262221	68	2.0	67	92	1	229	21	27	10	40	1.86
10262446--10262488	21	2.0	21	100	0	86	39	18	18	23	1.92
10266318--10266366	23	2.2	22	82	10	55	63	0	0	36	0.95
10266435--10266473	13	3.0	13	85	7	53	48	2	2	46	1.29
10271819--10271859	2	21.0	2	90	5	66	46	0	0	53	1.00
10271991--10272044	16	3.5	15	78	16	56	57	0	0	42	0.98
10271991--10272044	12	4.6	12	78	17	60	57	0	0	42	0.98
10272005--10272045	8	5.4	7	83	16	55	58	0	0	41	0.98
10273963--10274037	3	24.7	3	75	12	64	65	2	5	26	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10273988--10274037	19	2.7	18	79	11	57	68	0	6	26	1.13
10274313--10274386	14	5.2	14	75	3	67	54	24	1	20	1.53
10274313--10274351	15	2.7	15	88	4	53	58	20	2	17	1.50
10278274--10278321	25	1.9	25	86	0	69	47	2	2	47	1.25
10279037--10279068	17	1.9	16	93	6	55	71	0	3	25	1.00
10280801--10280872	27	2.5	30	73	13	71	70	0	1	27	0.95
10281975--10282065	3	29.3	3	72	14	60	64	3	3	28	1.25
10282231--10282261	3	10.3	3	100	0	62	67	0	0	32	0.91
10282408--10282520	15	7.6	15	73	9	79	48	27	1	22	1.60
10282401--10282550	44	3.4	44	75	15	107	48	29	2	20	1.61
10282512--10282565	22	2.4	24	79	14	62	50	27	1	20	1.59
10282645--10282695	14	3.6	14	79	10	59	47	35	3	13	1.62
10289698--10289723	11	2.4	11	100	0	52	84	0	15	0	0.62
10290796--10290825	15	2.0	15	93	0	51	20	23	13	43	1.86
10291147--10291231	41	2.1	40	81	14	95	40	16	15	28	1.89
10291421--10291780	128	3.0	115	83	8	377	32	14	16	36	1.89
10291653--10291848	105	1.9	107	87	2	297	34	14	14	36	1.87
10292058--10292132	22	3.5	22	77	12	57	29	16	14	40	1.88
10292071--10292163	22	4.2	22	77	10	91	29	17	17	36	1.92
10292122--10292579	132	3.5	131	80	2	441	25	21	16	36	1.94
10292367--10292434	22	3.1	21	83	10	75	30	23	16	29	1.96
10292499--10292558	22	2.7	22	82	10	70	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10292584--10292679	37	2.6	36	72	6	86	16	15	15	52	1.76
10292933--10292975	17	2.5	17	96	0	77	79	0	0	20	0.74
10292910--10292970	21	3.0	20	82	15	65	70	0	0	29	0.88
10292916--10292976	26	2.4	26	81	10	74	77	0	0	22	0.78
10292916--10292976	8	7.4	8	74	7	50	77	0	0	22	0.78
10292963--10293002	21	2.0	20	85	5	53	77	7	10	5	1.11
10294378--10294416	3	13.3	3	86	5	53	61	0	2	35	1.10
10294560--10294675	15	7.9	15	76	6	96	48	27	1	22	1.60
10294560--10294683	44	2.9	43	81	3	133	48	29	1	20	1.59
10294556--10294678	29	4.2	29	77	8	124	47	29	1	21	1.60
10294717--10294786	30	2.4	28	81	9	79	54	24	0	21	1.45
10296159--10296192	17	2.0	17	88	0	50	55	2	0	41	1.15
10308188--10308228	19	2.3	19	87	8	59	48	2	4	43	1.37
10312446--10312470	12	2.1	12	100	0	50	8	16	16	60	1.58
10313715--10313747	2	16.5	2	93	0	57	48	0	48	3	1.17
10314768--10314802	17	2.0	18	94	5	63	45	0	0	54	0.99
10314774--10314831	23	2.7	22	75	17	59	39	0	1	58	1.08
10317476--10317510	16	2.1	18	89	10	56	71	2	0	25	1.00
10318637--10318691	20	3.0	20	70	24	57	50	1	0	47	1.11
10318665--10318717	16	3.3	17	74	12	58	58	0	0	41	0.98
10327997--10328320	56	5.6	56	79	9	344	38	12	5	43	1.67
10327997--10328328	119	2.8	118	84	5	417	37	12	5	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10327997--10328348	174	2.0	171	84	4	429	38	11	5	44	1.65
10328388--10328432	17	2.6	17	85	0	63	77	2	6	13	1.05
10328345--10328431	12	7.8	11	73	15	72	77	2	5	14	1.06
10329220--10329253	9	3.6	9	88	11	50	82	2	0	14	0.79
10329270--10329322	22	2.5	22	84	9	65	67	3	3	24	1.23
10329360--10329516	70	2.2	72	80	10	162	73	1	7	17	1.15
10329684--10329854	42	4.1	41	86	0	180	35	21	18	25	1.96
10330871--10330932	16	3.8	16	93	2	97	16	1	0	82	0.75
10330879--10330932	8	6.8	8	91	0	81	16	0	0	83	0.65
10330879--10330932	24	2.2	24	96	0	99	16	0	0	83	0.65
10341310--10341643	61	5.7	56	79	9	355	35	14	5	44	1.69
10341653--10341753	5	19.6	5	70	20	57	76	1	5	15	1.07
10341781--10341806	4	6.5	4	100	0	52	53	0	0	46	1.00
10342547--10342646	12	8.3	11	76	14	83	74	3	3	20	1.09
10342559--10342647	6	14.7	6	73	11	65	75	2	3	19	1.05
10342617--10342656	21	1.9	21	85	10	55	77	2	5	15	1.04
10346156--10346203	12	4.1	12	81	5	62	81	4	12	2	0.93
10355443--10355498	2	28.0	2	100	0	112	50	0	0	50	1.00
10366149--10366391	120	2.0	120	95	0	441	40	16	19	23	1.91
10371854--10371878	6	4.2	6	100	0	50	0	16	0	84	0.63
10387362--10387391	15	2.0	15	93	0	51	40	16	0	43	1.48
10387831--10387879	16	2.9	16	79	8	53	36	0	6	57	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10389421--10389489	29	2.3	30	85	9	88	36	1	4	57	1.27
10391599--10391632	12	2.8	12	90	0	50	64	0	26	8	1.22
10397582--10398378	203	4.0	201	81	7	816	33	12	13	39	1.83
10397612--10398352	200	3.7	196	81	9	739	33	12	13	40	1.82
10399505--10399650	67	2.2	67	80	8	181	22	13	6	58	1.57
10399682--10400153	170	2.8	168	85	2	638	37	11	8	41	1.72
10400180--10400213	7	4.7	7	88	3	50	14	2	0	82	0.79
10400177--10400213	14	2.5	15	86	8	58	18	2	0	78	0.87
10401270--10401298	8	3.6	8	100	0	58	20	0	0	79	0.74
10401453--10402345	43	21.3	42	77	6	635	43	17	11	26	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93