genome.fa.s190.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  57  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7204398--7204668	124	2.2	121	81	3	319	35	15	13	36	1.86
7209513--7209811	62	4.8	61	72	11	194	38	13	14	34	1.84
7214863--7214889	13	2.1	13	100	0	54	66	7	0	25	1.17
7215121--7215162	22	1.9	22	85	9	59	50	9	0	40	1.35
7215906--7216212	152	2.0	153	85	4	415	42	6	5	45	1.53
7216200--7216252	16	3.4	16	74	10	56	52	5	0	41	1.25
7216658--7216707	23	2.2	23	82	13	59	58	4	2	36	1.29
7217276--7217365	34	2.6	34	68	15	78	32	15	15	36	1.89
7217892--7217934	21	1.9	24	86	13	65	41	0	2	55	1.12
7218040--7218112	33	2.2	34	90	2	112	32	15	9	42	1.79
7218256--7218296	22	1.9	21	85	14	57	39	0	26	34	1.57
7218829--7218991	62	2.6	61	79	11	188	36	15	15	32	1.89
7219075--7219334	60	4.3	60	75	13	212	31	13	13	41	1.83
7219096--7219334	61	4.0	60	75	14	215	30	14	12	41	1.84
7226278--7226985	62	11.3	62	69	10	273	38	14	15	32	1.87
7226316--7226542	125	1.8	122	81	9	280	40	15	14	29	1.87
7226285--7226809	187	2.8	185	81	6	513	38	14	14	32	1.86
7226500--7226848	190	1.8	191	84	4	479	35	12	16	35	1.86
7231549--7231593	20	2.2	21	88	4	65	40	4	2	53	1.33
7232834--7232886	2	25.5	2	84	7	70	45	5	0	49	1.26
7232893--7233208	152	2.0	152	84	5	402	41	6	5	46	1.54
7234872--7234919	25	1.9	25	87	8	71	39	0	2	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7235023--7235100	34	2.3	34	84	6	95	34	12	11	41	1.80
7235039--7235102	19	3.6	18	70	21	55	32	12	10	43	1.77
7235595--7235812	62	3.5	61	77	7	217	31	11	16	40	1.84
7235595--7235813	61	3.6	61	76	9	203	31	11	16	41	1.84
7236114--7236279	62	2.7	62	79	2	190	36	16	15	32	1.90
7235894--7236522	186	3.4	181	72	12	497	33	16	13	37	1.87
7236447--7236614	61	2.8	62	79	11	154	32	17	11	39	1.85
7243234--7243316	36	2.3	36	91	0	130	31	10	26	31	1.90
7243311--7243465	64	2.5	62	80	10	172	45	15	10	28	1.79
7244383--7244449	33	2.0	33	100	0	134	40	8	2	47	1.50
7248603--7248656	24	2.2	25	83	3	65	50	7	0	42	1.30
7249541--7249565	2	12.5	2	100	0	50	52	0	0	48	1.00
7250646--7250683	13	2.8	14	84	15	53	28	0	13	57	1.36
7258123--7258191	18	3.8	17	80	16	68	2	27	2	66	1.20
7258123--7258188	20	3.5	20	80	13	68	3	27	3	66	1.21
7258311--7258345	14	2.3	15	90	9	54	77	5	5	11	1.12
7258311--7258346	15	2.3	16	90	4	56	77	5	5	11	1.10
7259466--7259495	14	2.1	14	100	0	60	6	13	0	80	0.91
7259464--7259502	20	2.0	20	85	10	53	5	15	0	79	0.90
7261670--7261715	19	2.5	18	86	6	65	78	6	4	10	1.08
7268185--7268245	26	2.3	25	83	10	77	78	13	1	6	1.01
7278837--7279147	48	6.7	47	83	5	284	29	12	18	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7278837--7279054	95	2.3	95	81	6	280	28	11	19	40	1.87
7279024--7279263	44	5.5	44	83	2	243	30	12	16	41	1.85
7279024--7279294	88	3.1	88	81	3	307	30	12	15	42	1.83
7279455--7279498	10	4.4	10	82	5	54	0	20	0	79	0.73
7280375--7280404	9	3.3	9	90	0	51	36	0	3	60	1.14
7281850--7281884	18	2.0	18	88	5	54	42	0	2	54	1.15
7282374--7282413	11	3.5	11	86	6	53	0	17	0	82	0.67
7283292--7283338	24	2.0	24	83	8	60	31	0	6	61	1.21
7285885--7285921	19	1.9	19	88	0	56	10	0	37	51	1.37
7286649--7286690	20	2.1	20	100	0	84	23	19	14	42	1.87
7288588--7288709	43	2.7	43	81	7	120	48	32	0	18	1.49
7288928--7288971	21	2.0	21	82	8	52	59	4	9	27	1.48
7289100--7289191	12	7.3	13	71	18	54	17	1	34	46	1.55
7289075--7289172	44	2.2	44	85	5	135	19	1	32	46	1.57
7289135--7289190	19	3.0	19	89	2	87	12	1	39	46	1.52
7289396--7289468	12	5.9	12	78	15	69	19	1	35	43	1.59
7289395--7289523	25	5.2	25	77	12	131	16	3	37	43	1.64
7289396--7289519	19	6.6	18	72	16	76	16	3	35	44	1.64
7289394--7289523	50	2.6	49	80	11	149	16	3	36	43	1.64
7289458--7289521	31	2.1	31	81	0	74	14	4	37	43	1.66
7299033--7299114	37	2.3	36	87	6	121	50	1	1	47	1.16
7299254--7299321	20	3.3	20	77	18	61	29	7	7	55	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7299385--7299442	25	2.3	26	83	13	70	41	0	3	55	1.17
7299398--7299447	25	2.0	24	88	11	75	42	0	0	58	0.98
7302920--7302970	21	2.6	21	90	9	81	49	0	0	50	1.00
7305050--7305087	20	1.9	20	94	0	67	15	5	23	55	1.61
7305040--7305131	12	7.7	12	68	17	57	18	3	17	60	1.49
7306989--7307022	12	2.8	12	90	0	50	26	8	0	64	1.22
7309224--7309270	21	2.2	21	88	7	69	25	2	2	70	1.10
7309278--7309312	15	2.3	15	90	0	52	22	0	2	74	0.95
7311734--7311759	9	2.9	9	100	0	52	46	0	0	53	1.00
7315256--7315370	33	3.5	34	73	5	83	42	13	17	26	1.86
7315309--7315383	33	2.3	33	88	4	107	40	20	20	20	1.92
7316638--7316699	26	2.4	25	84	10	79	11	11	1	75	1.11
7316658--7316710	19	2.7	19	80	8	63	9	13	0	77	0.99
7323906--7323974	18	3.8	17	80	16	68	2	27	2	66	1.20
7323906--7323971	20	3.5	20	80	13	68	3	27	3	66	1.21
7324094--7324128	14	2.3	15	90	9	54	77	5	5	11	1.12
7324094--7324129	15	2.3	16	90	4	56	77	5	5	11	1.10
7324639--7324665	13	2.1	13	100	0	54	48	14	7	29	1.71
7325224--7325253	3	10.0	3	100	0	60	33	0	0	66	0.92
7326194--7326238	22	2.0	24	86	8	67	42	0	2	55	1.12
7340672--7340930	47	5.5	47	85	2	349	29	11	17	41	1.84
7340920--7341134	44	4.9	44	83	0	234	28	15	17	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7340905--7341134	88	2.6	88	84	2	295	29	14	16	39	1.88
7340905--7341180	88	3.1	88	81	4	247	30	13	15	40	1.86
7341320--7341359	21	2.0	20	90	5	62	10	7	0	82	0.84
7343295--7343340	12	4.0	12	77	11	51	45	0	0	54	0.99
7343591--7343620	14	2.1	14	100	0	60	70	0	0	30	0.88
7344818--7344854	19	1.9	19	88	0	56	10	0	37	51	1.37
7348028--7348078	18	2.8	18	82	5	59	13	1	41	43	1.55
7348283--7348326	12	3.6	12	81	6	52	15	0	38	45	1.47
7348343--7348421	19	4.2	19	75	3	61	16	5	36	41	1.70
7357895--7357976	37	2.3	36	85	6	112	50	2	1	46	1.22
7358245--7358300	25	2.3	25	85	11	73	42	0	3	53	1.18
7358257--7358305	25	2.0	24	92	7	82	42	0	0	57	0.99
7358206--7358541	113	2.9	112	75	12	308	37	4	6	51	1.48
7358248--7358541	114	2.6	111	75	15	262	37	4	6	52	1.48
7361187--7361213	2	13.5	2	100	0	54	48	0	0	51	1.00
7361852--7361903	21	2.5	21	90	6	79	50	0	0	50	1.00
7361852--7361903	22	2.5	22	93	6	90	50	0	0	50	1.00
7361876--7361943	30	2.3	30	82	2	84	55	1	0	42	1.08
7363991--7364028	20	1.9	20	94	0	67	15	5	23	55	1.61
7363981--7364072	12	7.7	12	68	17	57	18	3	17	60	1.49
7364442--7364480	3	13.0	3	100	0	78	33	0	0	66	0.92
7366256--7366287	15	2.1	15	94	0	55	90	9	0	0	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7368164--7368252	21	4.3	21	75	10	62	25	2	2	69	1.11
7385787--7385879	33	2.9	31	78	12	98	10	11	1	76	1.08
7385787--7385881	41	2.3	39	81	12	102	10	11	1	76	1.06
7385832--7385898	14	4.8	13	72	16	62	10	10	0	79	0.95
7388384--7388479	46	2.1	46	86	3	131	13	29	18	38	1.89
7390019--7390053	4	8.8	4	87	12	54	74	0	0	25	0.82
7403807--7403848	17	2.3	19	88	8	61	42	0	0	57	0.99
7403834--7403875	13	3.2	13	80	6	50	52	0	0	47	1.00
7403817--7403856	18	2.2	18	86	8	55	50	0	0	50	1.00
7403887--7403919	16	2.1	16	88	11	50	72	0	0	27	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93